Trim6 (tripartite motif-containing 6) - Rat Genome Database

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Gene: Trim6 (tripartite motif-containing 6) Mus musculus
Analyze
Symbol: Trim6
Name: tripartite motif-containing 6
RGD ID: 1316641
MGI Page MGI
Description: Exhibits protein kinase binding activity and transcription factor binding activity. Involved in several processes, including negative regulation of viral genome replication; positive regulation of type I interferon-mediated signaling pathway; and regulation of gene expression. Localizes to cytosol and nucleus. Is expressed in testis. Orthologous to human TRIM6 (tripartite motif containing 6); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C430046K18Rik; D7Ertd684; D7Ertd684e; RING-type E3 ubiquitin transferase TRIM6; tripartite motif protein 6; tripartite motif-containing protein 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397103,868,002 - 103,884,359 (+)NCBIGRCm39mm39
GRCm39 Ensembl7103,868,000 - 103,884,359 (+)Ensembl
GRCm387104,218,795 - 104,235,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7104,218,793 - 104,235,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv377111,367,309 - 111,383,666 (+)NCBIGRCm37mm9NCBIm37
MGSCv36794,018,892 - 94,035,354 (+)NCBImm8
MGSCv367104,092,637 - 104,108,973 (+)NCBImm8
Celera7104,604,665 - 104,619,682 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,ISO)
cytosol  (IBA,IMP)
nucleoplasm  (IBA)
nucleus  (IMP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7671812   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15618518   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18287559   PMID:18799693   PMID:19147168   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22328504   PMID:24882218   PMID:31171760  


Genomics

Comparative Map Data
Trim6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397103,868,002 - 103,884,359 (+)NCBIGRCm39mm39
GRCm39 Ensembl7103,868,000 - 103,884,359 (+)Ensembl
GRCm387104,218,795 - 104,235,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7104,218,793 - 104,235,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv377111,367,309 - 111,383,666 (+)NCBIGRCm37mm9NCBIm37
MGSCv36794,018,892 - 94,035,354 (+)NCBImm8
MGSCv367104,092,637 - 104,108,973 (+)NCBImm8
Celera7104,604,665 - 104,619,682 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.55NCBI
TRIM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl115,596,109 - 5,612,958 (+)EnsemblGRCh38hg38GRCh38
GRCh38115,596,111 - 5,612,952 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37115,617,341 - 5,634,182 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,573,923 - 5,590,764 (+)NCBINCBI36hg18NCBI36
Build 34115,573,922 - 5,590,764NCBI
Celera115,735,961 - 5,753,014 (+)NCBI
Cytogenetic Map11p15.4NCBI
HuRef115,275,183 - 5,292,762 (+)NCBIHuRef
CHM1_1115,616,290 - 5,633,137 (+)NCBICHM1_1
Trim6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21158,683,746 - 158,696,936 (+)NCBI
Rnor_6.0 Ensembl1169,410,115 - 169,423,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01169,410,084 - 169,423,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01175,550,133 - 175,563,346 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41162,059,220 - 162,094,672 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11162,180,654 - 162,187,805 (+)NCBI
Celera1156,680,750 - 156,687,600 (+)NCBICelera
Cytogenetic Map1q32NCBI
Trim6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541421,481,129 - 21,514,548 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541421,495,593 - 21,513,703 (+)NCBIChiLan1.0ChiLan1.0
TRIM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1115,412,952 - 5,460,537 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl115,413,491 - 5,460,532 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0115,731,256 - 5,748,057 (+)NCBIMhudiblu_PPA_v0panPan3
TRIM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,595,887 - 28,611,562 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,595,448 - 28,611,124 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,383,550 - 28,390,775 (+)NCBI
ROS_Cfam_1.02129,419,425 - 29,434,660 (+)NCBI
UMICH_Zoey_3.12128,735,956 - 28,743,169 (+)NCBI
UNSW_CanFamBas_1.02128,941,372 - 28,948,584 (+)NCBI
UU_Cfam_GSD_1.02129,076,932 - 29,084,154 (+)NCBI
Trim6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494757,485,230 - 57,493,226 (-)NCBI
SpeTri2.0NW_00493709723,695 - 31,673 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,136,690 - 61,147,911 (-)NCBI
Vero_WHO_p1.0NW_02366604364,854,397 - 64,870,606 (+)NCBI
Trim6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248177,029,104 - 7,053,447 (+)NCBI

Position Markers
AW536332  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387104,234,396 - 104,234,480UniSTSGRCm38
MGSCv377111,382,910 - 111,382,994UniSTSGRCm37
Celera7104,618,923 - 104,619,010UniSTS
Cytogenetic Map7F1UniSTS
cM Map749.8UniSTS
Whitehead/MRC_RH71049.88UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
UniSTS:235735  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387104,219,641 - 104,219,729UniSTSGRCm38
MGSCv377111,368,155 - 111,368,243UniSTSGRCm37
Celera7104,605,511 - 104,605,599UniSTS
Cytogenetic Map7F1UniSTS
cM Map749.8UniSTS
D7Ertd684e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387104,233,777 - 104,233,976UniSTSGRCm38
MGSCv377111,382,291 - 111,382,490UniSTSGRCm37
Celera7104,618,302 - 104,618,503UniSTS
Cytogenetic Map7F1UniSTS
cM Map749.8UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718994869119886157Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730500000109400000Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736580590116817642Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745512542119094307Mouse
13208555Lgth10_mbody length 10 (mouse)752000000126000000Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753600000143600000Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)755169841117223580Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)757300000134400000Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)762100000121800000Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)762100000124100000Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765600000126900000Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)768200000105800000Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)768200000119900000Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)768200000124600000Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)768200000125400000Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)770300000120900000Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770493929104494171Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772614164106614164Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773400000126100000Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773500000143600000Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)774076757108076757Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)775200000122600000Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)775200000122600000Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775745007109745138Mouse
14746989Manh62_mmandible shape 62 (mouse)776093321110093321Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)779000000137300000Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80902474114902584Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780902474114902584Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)781200000127100000Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781600000124600000Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781800000126900000Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)782200000126900000Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785400000124600000Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785716387112934612Mouse
1301647Elpt_melevated leptin (mouse)Not determined786850979120851122Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787394725121394859Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787394725121394859Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787394725121394859Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787493929119886157Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787600000126900000Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787600000126900000Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)788200000108500000Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791883789125883949Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791883789125883949Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793792641127792834Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798565687132565775Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798795739132795739Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined7100238481134238481Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7101151499135151620Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7101394038135394119Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7102094158136094307Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7102094158136094307Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7102094158136094307Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102885996136886157Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1217
Count of miRNA genes:631
Interacting mature miRNAs:756
Transcripts:ENSMUST00000097023, ENSMUST00000098180, ENSMUST00000128493, ENSMUST00000144455, ENSMUST00000144538, ENSMUST00000153324
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000098180   ⟹   ENSMUSP00000095782
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl7104,218,795 - 104,235,152 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128493   ⟹   ENSMUSP00000118859
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl7104,219,429 - 104,225,933 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144455   ⟹   ENSMUSP00000116233
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl7104,218,837 - 104,225,896 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144538
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl7104,218,793 - 104,227,733 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153324   ⟹   ENSMUSP00000119932
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl7104,221,172 - 104,226,829 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214578   ⟹   ENSMUSP00000149805
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl7104,225,507 - 104,232,998 (+)Ensembl
RefSeq Acc Id: NM_001013616   ⟹   NP_001013637
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397103,868,002 - 103,884,359 (+)NCBI
GRCm387104,218,795 - 104,235,152 (+)NCBI
MGSCv377111,367,309 - 111,383,666 (+)RGD
Celera7104,604,665 - 104,619,682 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006508364   ⟹   XP_006508427
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397103,868,422 - 103,884,114 (+)NCBI
GRCm387104,219,214 - 104,234,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508365   ⟹   XP_006508428
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397103,868,011 - 103,884,114 (+)NCBI
GRCm387104,218,804 - 104,234,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508366   ⟹   XP_006508429
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397103,868,106 - 103,884,114 (+)NCBI
GRCm387104,218,899 - 104,234,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312407   ⟹   XP_017167896
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397103,868,007 - 103,881,567 (+)NCBI
GRCm387104,218,800 - 104,232,360 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001013637   ⟸   NM_001013616
- UniProtKB: Q8BGE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006508428   ⟸   XM_006508365
- Peptide Label: isoform X1
- UniProtKB: Q8BGE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006508429   ⟸   XM_006508366
- Peptide Label: isoform X1
- UniProtKB: Q8BGE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006508427   ⟸   XM_006508364
- Peptide Label: isoform X1
- UniProtKB: Q8BGE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017167896   ⟸   XM_017312407
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000116233   ⟸   ENSMUST00000144455
RefSeq Acc Id: ENSMUSP00000119932   ⟸   ENSMUST00000153324
RefSeq Acc Id: ENSMUSP00000118859   ⟸   ENSMUST00000128493
RefSeq Acc Id: ENSMUSP00000095782   ⟸   ENSMUST00000098180
RefSeq Acc Id: ENSMUSP00000149805   ⟸   ENSMUST00000214578
Protein Domains
B box-type   B30.2/SPRY   RING-type

Promoters
RGD ID:8665065
Promoter ID:EPDNEW_M10564
Type:initiation region
Name:Trim6_1
Description:Mus musculus tripartite motif-containing 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10565  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387104,218,816 - 104,218,876EPDNEW
RGD ID:8665067
Promoter ID:EPDNEW_M10565
Type:multiple initiation site
Name:Trim6_2
Description:Mus musculus tripartite motif-containing 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10564  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387104,219,409 - 104,219,469EPDNEW
RGD ID:6842251
Promoter ID:MM_KWN:51990
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   ES_Cell,   Liver
Transcripts:OTTMUST00000045983
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367111,367,301 - 111,367,801 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2137352 AgrOrtholog
Ensembl Genes ENSMUSG00000072244 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000095782 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116233 UniProtKB/TrEMBL
  ENSMUSP00000118859 UniProtKB/TrEMBL
  ENSMUSP00000119932 UniProtKB/TrEMBL
  ENSMUSP00000149805 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098180 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000128493 UniProtKB/TrEMBL
  ENSMUST00000144455 UniProtKB/TrEMBL
  ENSMUST00000153324 UniProtKB/TrEMBL
  ENSMUST00000214578 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY/SPRY_TRIM6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf-RING_LisH UniProtKB/TrEMBL
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box_chordata UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:94088 UniProtKB/Swiss-Prot
MGD MGI:2137352 ENTREZGENE
NCBI Gene 94088 ENTREZGENE
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PhenoGen Trim6 PhenoGen
PRINTS BBOXZNFINGER UniProtKB/TrEMBL
  BUTYPHLNCDUF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SS93_MOUSE UniProtKB/TrEMBL
  D3YY77_MOUSE UniProtKB/TrEMBL
  D3Z676_MOUSE UniProtKB/TrEMBL
  D3Z7U8_MOUSE UniProtKB/TrEMBL
  Q8BGE7 ENTREZGENE
  Q8R2Z8_MOUSE UniProtKB/TrEMBL
  TRIM6_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B2RSQ8 UniProtKB/Swiss-Prot
  Q99PQ6 UniProtKB/Swiss-Prot