TRIM6 (tripartite motif containing 6) - Rat Genome Database

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Gene: TRIM6 (tripartite motif containing 6) Canis lupus familiaris
Analyze
Symbol: TRIM6
Name: tripartite motif containing 6
RGD ID: 12353759
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (inferred); identical protein binding (inferred); metal ion binding (inferred); INVOLVED IN regulation of non-canonical NF-kappaB signal transduction (ortholog); regulation of protein stability (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: tripartite motif-containing protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,595,887 - 28,611,562 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,595,448 - 28,611,124 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,383,550 - 28,390,775 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02129,419,425 - 29,434,660 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2129,419,208 - 29,434,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12128,735,956 - 28,743,169 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02128,941,372 - 28,948,584 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02129,076,932 - 29,084,154 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TRIM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,595,887 - 28,611,562 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,595,448 - 28,611,124 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,383,550 - 28,390,775 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02129,419,425 - 29,434,660 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2129,419,208 - 29,434,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12128,735,956 - 28,743,169 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02128,941,372 - 28,948,584 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02129,076,932 - 29,084,154 (+)NCBIUU_Cfam_GSD_1.0
TRIM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,596,111 - 5,612,952 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,596,109 - 5,612,958 (+)EnsemblGRCh38hg38GRCh38
GRCh37115,617,341 - 5,634,182 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,573,923 - 5,590,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 34115,573,922 - 5,590,764NCBI
Celera115,735,961 - 5,753,014 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef115,275,183 - 5,292,762 (+)NCBIHuRef
CHM1_1115,616,290 - 5,633,137 (+)NCBICHM1_1
T2T-CHM13v2.0115,655,518 - 5,672,393 (+)NCBIT2T-CHM13v2.0
Trim6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397103,868,002 - 103,884,359 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7103,868,000 - 103,884,359 (+)EnsemblGRCm39 Ensembl
GRCm387104,218,795 - 104,235,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7104,218,793 - 104,235,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv377111,367,309 - 111,383,666 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36794,018,892 - 94,035,354 (+)NCBIMGSCv36mm8
MGSCv367104,092,637 - 104,108,973 (+)NCBIMGSCv36mm8
Celera7104,604,665 - 104,619,682 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.55NCBI
Trim6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,095,619 - 168,108,809 (+)NCBIGRCr8
mRatBN7.21158,683,746 - 158,696,936 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1158,683,746 - 158,696,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1166,671,350 - 166,684,551 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01173,851,364 - 173,864,566 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01166,744,204 - 166,757,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01169,410,084 - 169,423,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,410,115 - 169,423,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,550,133 - 175,563,346 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41162,059,220 - 162,094,672 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11162,180,654 - 162,187,805 (+)NCBI
Celera1156,680,750 - 156,687,600 (+)NCBICelera
Cytogenetic Map1q32NCBI
Trim6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541421,481,129 - 21,514,548 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541421,495,593 - 21,513,703 (+)NCBIChiLan1.0ChiLan1.0
Trim6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494757,485,230 - 57,493,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493709724,911 - 31,681 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493709723,695 - 31,673 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100622028
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl94,196,921 - 4,218,415 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.194,197,922 - 4,204,688 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.294,681,682 - 4,696,722 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,136,690 - 61,147,911 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604364,854,397 - 64,870,606 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248177,045,228 - 7,053,525 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248177,029,104 - 7,053,447 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRIM6
293 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00000010104   ⟹   ENSCAFP00000009373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2128,603,902 - 28,611,124 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000085030   ⟹   ENSCAFP00000053137
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2128,595,448 - 28,611,124 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845037958   ⟹   ENSCAFP00845029744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2129,419,208 - 29,434,659 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845038054   ⟹   ENSCAFP00845029815
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2129,427,006 - 29,434,659 (+)Ensembl
RefSeq Acc Id: NM_001205190   ⟹   NP_001192119
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12128,603,902 - 28,611,124 (+)NCBI
Dog10K_Boxer_Tasha2128,383,550 - 28,390,775 (+)NCBI
ROS_Cfam_1.02129,427,006 - 29,434,229 (+)NCBI
UMICH_Zoey_3.12128,735,956 - 28,743,169 (+)NCBI
UNSW_CanFamBas_1.02128,941,372 - 28,948,584 (+)NCBI
UU_Cfam_GSD_1.02129,076,932 - 29,084,154 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038429411   ⟹   XP_038285339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02129,419,425 - 29,434,660 (+)NCBI
RefSeq Acc Id: XM_038429412   ⟹   XP_038285340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02129,419,457 - 29,434,660 (+)NCBI
RefSeq Acc Id: XM_038429413   ⟹   XP_038285341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02129,419,425 - 29,434,660 (+)NCBI
RefSeq Acc Id: NP_001192119   ⟸   NM_001205190
- UniProtKB: A0A8I3P879 (UniProtKB/TrEMBL),   A0A8P0T5M5 (UniProtKB/TrEMBL),   A0A8C0RHP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000009373   ⟸   ENSCAFT00000010104
RefSeq Acc Id: ENSCAFP00000053137   ⟸   ENSCAFT00000085030
RefSeq Acc Id: XP_038285339   ⟸   XM_038429411
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P879 (UniProtKB/TrEMBL),   A0A8P0T5M5 (UniProtKB/TrEMBL),   A0A8C0RHP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038285341   ⟸   XM_038429413
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RHP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038285340   ⟸   XM_038429412
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P879 (UniProtKB/TrEMBL),   A0A8P0T5M5 (UniProtKB/TrEMBL),   A0A8C0RHP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845029815   ⟸   ENSCAFT00845038054
RefSeq Acc Id: ENSCAFP00845029744   ⟸   ENSCAFT00845037958
Protein Domains
B box-type   B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000048998 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030011196 UniProtKB/TrEMBL
  ENSCAFG00040017249 UniProtKB/TrEMBL
  ENSCAFG00845021489 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010104.6 UniProtKB/TrEMBL
  ENSCAFT00000085030.2 UniProtKB/TrEMBL
  ENSCAFT00030020834.1 UniProtKB/TrEMBL
  ENSCAFT00030020888.1 UniProtKB/TrEMBL
  ENSCAFT00040032215.1 UniProtKB/TrEMBL
  ENSCAFT00845037958 ENTREZGENE
  ENSCAFT00845037958.1 UniProtKB/TrEMBL
  ENSCAFT00845038054.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  PRY/SPRY_TRIM6 UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  Znf-RING_euk UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report cfa:100568301 UniProtKB/TrEMBL
NCBI Gene TRIM6 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/TrEMBL
  TRIPARTITE MOTIF-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A8C0MX84_CANLF UniProtKB/TrEMBL
  A0A8C0RHP8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SXL7_CANLF UniProtKB/TrEMBL
  A0A8I3P879 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PBT8_CANLF UniProtKB/TrEMBL
  A0A8P0T5M5 ENTREZGENE, UniProtKB/TrEMBL