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Gene: ALS2CL (ALS2 C-terminal like) Chlorocebus sabaeus

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Symbol:

ALS2CL

Name:

ALS2 C-terminal like

RGD ID:

18493666

Description:

ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN protein localization (ortholog); ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); schizophrenia (ortholog); FOUND IN cytoplasm (inferred); cytoplasmic vesicle (inferred); intracellular membrane-bounded organelle (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ALS2 C-terminal-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ALS2CL (ALS2 C-terminal like)	NCBI	Ortholog
Mus musculus (house mouse):	Als2cl (ALS2 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Als2cl (ALS2 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Als2cl (ALS2 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ALS2CL (ALS2 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ALS2CL (ALS2 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Als2cl (ALS2 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ALS2CL (ALS2 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Als2cl (ALS2 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	8,093,439 - 8,116,940 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	8,091,528 - 8,110,881 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	159,033,261 - 159,058,130 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ALS2CL	Green Monkey	Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy		ISO	ALS2CL (Homo sapiens)	8554872	ClinVar Annotator: match by term: Microcephaly more ...	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ALS2CL	Green Monkey	schizophrenia		ISO	ALS2CL (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:21743468

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ALS2CL	Green Monkey	endosomal transport	involved_in	IEA	PANTHER:PTN001132272	150520179		TreeGrafter	GO_REF:0000118
ALS2CL	Green Monkey	protein localization	acts_upstream_of_or_within	ISO	Als2cl (Mus musculus)	9068941	PMID:17239822	MGI	PMID:17239822

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ALS2CL	Green Monkey	cytoplasm	located_in	IEA	PANTHER:PTN001132272	150520179		TreeGrafter	GO_REF:0000118
ALS2CL	Green Monkey	cytoplasmic vesicle	located_in	IEA	PANTHER:PTN001132272	150520179		TreeGrafter	GO_REF:0000118
ALS2CL	Green Monkey	intracellular membrane-bounded organelle	located_in	IEA	PANTHER:PTN001132272	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ALS2CL	Green Monkey	guanyl-nucleotide exchange factor activity	NOT\|enables	ISO	Als2cl (Mus musculus)	9068941	PMID:15388334	MGI	PMID:15388334
ALS2CL	Green Monkey	guanyl-nucleotide exchange factor activity	enables	IEA	PANTHER:PTN001132272	150520179		TreeGrafter	GO_REF:0000118
ALS2CL	Green Monkey	protein binding	enables	ISO	UniProtKB:P51148 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
ALS2CL	Green Monkey	protein binding	enables	ISO	UniProtKB:P20339	9068941	PMID:15388334	MGI	PMID:15388334
ALS2CL	Green Monkey	small GTPase binding	enables	IEA	PANTHER:PTN001132272	150520179		TreeGrafter	GO_REF:0000118

ALS2CL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	8,093,439 - 8,116,940 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	8,091,528 - 8,110,881 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	159,033,261 - 159,058,130 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ALS2CL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	46,668,995 - 46,693,679 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	46,668,995 - 46,693,704 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	46,710,485 - 46,735,169 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	46,685,683 - 46,710,175 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	46,648,229 - 46,672,945 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	46,753,355 - 46,778,070 (-)	NCBI		HuRef
CHM1_1	3	46,660,601 - 46,685,310 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	46,685,103 - 46,709,793 (-)	NCBI		T2T-CHM13v2.0

Als2cl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	110,709,203 - 110,729,598 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	110,708,938 - 110,729,598 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	110,880,120 - 110,900,530 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	110,879,870 - 110,900,530 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	110,782,678 - 110,803,034 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	110,724,990 - 110,745,340 (+)	NCBI		MGSCv36	mm8
Celera	9	110,606,134 - 110,626,473 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI
cM Map	9	60.79	NCBI

Als2cl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	119,746,498 - 119,762,824 (+)	NCBI		GRCr8
mRatBN7.2	8	110,863,753 - 110,884,434 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	110,864,975 - 110,884,419 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	119,156,081 - 119,176,680 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	119,160,731 - 119,174,830 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	118,494,443 - 118,515,055 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	115,269,448 - 115,287,976 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	115,288,197 - 115,306,337 (+)	NCBI
Celera	8	110,146,276 - 110,166,876 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Als2cl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955420	25,440,641 - 25,455,872 (+)	NCBI	ChiLan1.0	ChiLan1.0

ALS2CL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	46,626,013 - 46,649,108 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	46,630,748 - 46,653,872 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	46,568,200 - 46,591,331 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	47,671,265 - 47,695,772 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	47,671,286 - 47,695,772 (-)	Ensembl	panpan1.1		panPan2

ALS2CL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	42,067,018 - 42,091,125 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	42,066,833 - 42,088,321 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	41,982,917 - 42,007,069 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	42,549,320 - 42,573,473 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	42,541,177 - 42,570,324 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	41,790,574 - 41,811,579 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	42,191,649 - 42,212,661 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	42,472,701 - 42,493,718 (+)	NCBI		UU_Cfam_GSD_1.0

Als2cl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	200,956,940 - 200,976,633 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	506,077 - 525,746 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	506,088 - 525,576 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ALS2CL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	29,596,700 - 29,618,919 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	29,596,696 - 29,618,915 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	32,829,891 - 32,901,030 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Als2cl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	74,509,658 - 74,525,221 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in ALS2CL
671 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20


RefSeq Transcripts	XM_007983971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007983972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007983973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007983974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007983975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000014303 ⟹ ENSCSAP00000012279

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	22	8,091,528 - 8,110,881 (-)	Ensembl

RefSeq Acc Id:

XM_007983971 ⟹ XP_007982162

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	8,093,439 - 8,116,940 (-)	NCBI
Vero_WHO_p1.0	NW_023666041	159,033,261 - 159,058,130 (+)	NCBI

Sequence:

show sequence

GCAGGGTAGGGGTGCGAGCTCCGAGCTGCGCGCAATCCAGGCGCGGGGCAACCACAGCGCTCAGCTGTAACCTGTGCCCTACATGGGAGGCCCTGAGTCTGGCACCCAGCCATGTGCAACCCTGAGGA
GGCAGCCCTGCTGAGGCTGGAGGAGGTCTTCTCAGCCACCCTCGCCCGTGTCAACAGCTGTGTCCTCCAGCCCCTGCTCCCAGCCGCCCCAGAGCCCTCGGATCCCTGGGGCAGAGAGTGCCTGCGGC
TCTTGCAACAGCTGCACAAGAGCTCCCAGCAGCTCTGGGAGGTGACGGAGGAAAGTCTGCACTCACTGCAGGAGAGGCTGCGCCACCCGAACTCCACCGGTCTGGAGTCCCTGCTGCTGCTGCGAGGT
GCTGACCGTGTACTGCAGGCCCACATAGAGTACATCGAATCCTACACAAGCTGCATGGTGGTGCAGGCCTTCCAGAAGGCAGCAAAGAGGAGAAGTGAGTATTGGCGGGGCCAGCGGAAGGCGCTGCG
GCAGCTGTTGTCAGGTGTGAGCTCAGAGGGCTCGGTGGGCGCGTCGCTGGGCCAGGCCCTCCACCAGCCACTCACCCATCATGTGCAACAGTACGTGCTCCTCCTGCTGAGCCTCGGGGACACCATTG
GGGAGCATCACCCAACCCAGGAGCTGGTGGTGAACGCAGTCACCCTCTTTGGGAACCTGCAGTCCTTCATGAAGCAGGCTTTGGACCAGGCTGCAGCCACGCAGGCTCTCTGGCACACCCTGAGAGGC
CGGCCAAGGGATGTGCTCTGCACCCCTGCTCACAGACTCCTTCAGGACAGCCAGGACGTCCCCGTGACGGTCGCACCGCTGCGGGCTGAGCGTGTGCTGCTCTTTGATGATGCCCTCGTCCTGCTGCA
GGGCCACAACGTCCACACCTTTGATCTGAAGCTGGTGTGGGTGGATCCTGAGCAGGACGGGTGCACATTTCACCTCCTCACGCCTGAAGAAGAGTTCTCCTTTTGTGCCAAGGACTCCCAGGGCCAGG
CAGTCTGGCAGTGGAAGGTGACCCAGGCCGTTCGCCAGGTCCTGCGTGGGAAGAAGGACTTCCCCGTGCTGGGGGCTGGCCTGGAGCCCTCCCAGCCTCCCGCCTGCCGCTGCGCGGAATATACCTTC
CGCGCAGAGGGCCGGCTTTGCCAGGCCACCTATGAGGGCGAGTGGTGCAGGGCCCGGCCCCACGGCAAGGGAACCCTGAAATGGCCGGATGGGCGGAATCACGTGGGGAATTTCTGCCAGGGCCTGGA
GCATGGCTTCGGCATCCGCCTGCTGCCCCAGGCCTCTGAGGACAGGTTCGACTGTTACAAGTGCCACTGGCGAGAAGGCAGCATGTGCGGCTACGGCATCTGTGAGTACAGCACCGATGAGGTGTACA
AGGGCTACTTCCAGGAGGGCCTGCGGCACGGATTTGGGGTCCTTGAGAGTGGTCCACAGGCCCCCCAGCCCTTCAGGTACACAGGCCACTGGGAGAGGGGCCAGAGGAGCGGCTATGGCATCGAGGAG
GATAGTGACAGAGGCGAGCGCTACATCGGCATGTGGCAGGCTGGTCAGCGCCATGGCCCGGGGGTCGTGGTCACCCAGGCAGGTGTCTGCTACCAGGGCACCTTCCAGGCGGACAAGACGGTGGGTCC
AGGCATCCTCCTCTCTGAAGACGACTCCCTGTATGAGGGCACCTTCACCAGGGACCTGACCCTCATGGGGAAGGGCAAGGTCACCTTCCCCAATGGCTTCACCTTGGAGGGCTCGTTTGGCAGTGGGG
CAGGGAGAGGACTGCACACACAGGGTGTGCTGGACACAGCTGCCCTCCCACCGGACCCGAGCAACACCTGCAAGAGGCAGCTGGGCGTGGGTGCCTTCCCTGTGGAAAGCCGCTGGCAGGGAGTCTAC
AGGCCCTTCCGGGACTTTGTGTGTGCTGGCTGCCCCAGGGACCTGCAGGAGGCCCTGCTGGGCTTTGACGTGCAGAGCTCCAGGGAGCTGCGCAGGTCTCAGGATTACCTGTGCTGCGAGAGGACCCA
CCCCGAGGACAGTGTGGGCAGTATGGAAGACATCCTGGAGGAGCTGCTACAGCACCGGGAACCCAAGGCCCTGCAGCCGTACCTCAGGAAGGCTCTGAGCAACTCACTGCACCCTCTGGGAAAGCTGC
TCCGGACACTGATGCTAACCTTCCAGGCTACCTATGCGGGTGTCGGGGCCAACAAGCACCTGCAGGAGCTGGCCCAGGAGGAGGTGAAGCAGCATGCCCGCGAACTCTGGGCTGCCTACAGGGGTCTG
CTTCGAGTTGCCTTACAGCGCAAGGGCCAGGCCCTGGAGGAAGATGAAGACACAGAGACAAGAGACCTCCAGGTACATGGATTGGTGCTGCCCCTCATGCTGCCCAGCTTCTACTCAGAGCTCTTCAC
GCTCTACCTGCTGCTTCATGAGCGGGAGGACAGCTTCTACAGCCAGGGCATCGCCAACCTGAGCCTCTTTCCTGATACCCAACTGCTCGAGTTCCTGGATGTGCAGAAGCACCTGTGGCCCCTCAAGG
ACCTCACGCTGACGAGCAATCAGAGGTACTCCCTGGTCAGGGACAAGTGTTTCCTGTCAGCCACCGAGTGCCTGCAGAAGATCATGACCACGGTGGACCCACGGGAGAAGCTGGAGGTGCTGGAGAGG
ACATACGGGGAAATTGAGGGCACGGTGTCGCGGGTGCTGGGCCGGGAGTACAAGCTGCCCATGGACGACCTGCTGCCGCTTCTCATCTATGTGGTGTCGCGCGCCCGAATTCAGCACCTGGGAGCCGA
GATCCACCTGATCCGTGACATGATGGACCCCAACCACACAGGAGGCCTGTATGACTTCCTGCTCACGGCCTTGGAGTCCTGTTACGAGCACATCCAGAAAGAAGACATGAGGCTGCACCGCTTACCTG
GCCACTGGCACTCCAGGGAGCTCTGGTAGCTTGGCCTTTCCTGGACAGACTGCAGAGCTGAGCAGGGCATTGCTGGCCTGTCCCTCATTACCCAAGGCAAAGGGCAGGACAGACCCTTGGAAGCAGCT
CTTTTGTTTTGCTTTTTGTTTTGCACAGGAAGATGCTGCTGCTGCCCTGACTGGGATGAGGGTGAGGGGTGATGGGTGTGGCCCTGGATGTGGTGGTTTTCCCTTGGCCACTAGCCCATCTCCAATGA
CCCCTTAATCTGCAGCAGCTCACAGGCTGGGGGTGAGGAGCTCCTGACTTCTCTTAGCCTGAGCCTTTCTCCCAAGTTGCAGAGCCTCTCTGGGCCTCAGTGCTGCCATCTGTAAATGGTGGAGTGAG
TATGCTGTAAAGGACCTTCCATCCATTTTGCTGAATTCCAGAGTCCTTTCGGAA

hide sequence

RefSeq Acc Id:

XM_007983972 ⟹ XP_007982163

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	8,093,439 - 8,110,304 (-)	NCBI
Vero_WHO_p1.0	NW_023666041	159,039,869 - 159,058,130 (+)	NCBI

Sequence:

show sequence

TTGTCAGGTGTGAGCTCAGAGGGCTCGGTGGGCGCGTCGCTGGGCCAGGCCCTCCACCAGCCAC
TCACCCATCATGTGCAACACATCACCCAACCCAGGAGCTGGTGGTGAACGCAGTCACCCTCTTTGGGAACCTGCAGTCCTTCATGAAGCAGGCTTTGGACCAGGCTGCAGCCACGCAGGCTCTCTGGC
ACACCCTGAGAGGCCGGCCAAGGGATGTGCTCTGCACCCCTGCTCACAGACTCCTTCAGGACAGCCAGGACGTCCCCGTGACGGTCGCACCGCTGCGGGCTGAGCGTGTGCTGCTCTTTGATGATGCC
CTCGTCCTGCTGCAGGGCCACAACGTCCACACCTTTGATCTGAAGCTGGTGTGGGTGGATCCTGAGCAGGACGGGTGCACATTTCACCTCCTCACGCCTGAAGAAGAGTTCTCCTTTTGTGCCAAGGA
CTCCCAGGGCCAGGCAGTCTGGCAGTGGAAGGTGACCCAGGCCGTTCGCCAGGTCCTGCGTGGGAAGAAGGACTTCCCCGTGCTGGGGGCTGGCCTGGAGCCCTCCCAGCCTCCCGCCTGCCGCTGCG
CGGAATATACCTTCCGCGCAGAGGGCCGGCTTTGCCAGGCCACCTATGAGGGCGAGTGGTGCAGGGCCCGGCCCCACGGCAAGGGAACCCTGAAATGGCCGGATGGGCGGAATCACGTGGGGAATTTC
TGCCAGGGCCTGGAGCATGGCTTCGGCATCCGCCTGCTGCCCCAGGCCTCTGAGGACAGGTTCGACTGTTACAAGTGCCACTGGCGAGAAGGCAGCATGTGCGGCTACGGCATCTGTGAGTACAGCAC
CGATGAGGTGTACAAGGGCTACTTCCAGGAGGGCCTGCGGCACGGATTTGGGGTCCTTGAGAGTGGTCCACAGGCCCCCCAGCCCTTCAGGTACACAGGCCACTGGGAGAGGGGCCAGAGGAGCGGCT
ATGGCATCGAGGAGGATAGTGACAGAGGCGAGCGCTACATCGGCATGTGGCAGGCTGGTCAGCGCCATGGCCCGGGGGTCGTGGTCACCCAGGCAGGTGTCTGCTACCAGGGCACCTTCCAGGCGGAC
AAGACGGTGGGTCCAGGCATCCTCCTCTCTGAAGACGACTCCCTGTATGAGGGCACCTTCACCAGGGACCTGACCCTCATGGGGAAGGGCAAGGTCACCTTCCCCAATGGCTTCACCTTGGAGGGCTC
GTTTGGCAGTGGGGCAGGGAGAGGACTGCACACACAGGGTGTGCTGGACACAGCTGCCCTCCCACCGGACCCGAGCAACACCTGCAAGAGGCAGCTGGGCGTGGGTGCCTTCCCTGTGGAAAGCCGCT
GGCAGGGAGTCTACAGGCCCTTCCGGGACTTTGTGTGTGCTGGCTGCCCCAGGGACCTGCAGGAGGCCCTGCTGGGCTTTGACGTGCAGAGCTCCAGGGAGCTGCGCAGGTCTCAGGATTACCTGTGC
TGCGAGAGGACCCACCCCGAGGACAGTGTGGGCAGTATGGAAGACATCCTGGAGGAGCTGCTACAGCACCGGGAACCCAAGGCCCTGCAGCCGTACCTCAGGAAGGCTCTGAGCAACTCACTGCACCC
TCTGGGAAAGCTGCTCCGGACACTGATGCTAACCTTCCAGGCTACCTATGCGGGTGTCGGGGCCAACAAGCACCTGCAGGAGCTGGCCCAGGAGGAGGTGAAGCAGCATGCCCGCGAACTCTGGGCTG
CCTACAGGGGTCTGCTTCGAGTTGCCTTACAGCGCAAGGGCCAGGCCCTGGAGGAAGATGAAGACACAGAGACAAGAGACCTCCAGGTACATGGATTGGTGCTGCCCCTCATGCTGCCCAGCTTCTAC
TCAGAGCTCTTCACGCTCTACCTGCTGCTTCATGAGCGGGAGGACAGCTTCTACAGCCAGGGCATCGCCAACCTGAGCCTCTTTCCTGATACCCAACTGCTCGAGTTCCTGGATGTGCAGAAGCACCT
GTGGCCCCTCAAGGACCTCACGCTGACGAGCAATCAGAGGTACTCCCTGGTCAGGGACAAGTGTTTCCTGTCAGCCACCGAGTGCCTGCAGAAGATCATGACCACGGTGGACCCACGGGAGAAGCTGG
AGGTGCTGGAGAGGACATACGGGGAAATTGAGGGCACGGTGTCGCGGGTGCTGGGCCGGGAGTACAAGCTGCCCATGGACGACCTGCTGCCGCTTCTCATCTATGTGGTGTCGCGCGCCCGAATTCAG
CACCTGGGAGCCGAGATCCACCTGATCCGTGACATGATGGACCCCAACCACACAGGAGGCCTGTATGACTTCCTGCTCACGGCCTTGGAGTCCTGTTACGAGCACATCCAGAAAGAAGACATGAGGCT
GCACCGCTTACCTGGCCACTGGCACTCCAGGGAGCTCTGGTAGCTTGGCCTTTCCTGGACAGACTGCAGAGCTGAGCAGGGCATTGCTGGCCTGTCCCTCATTACCCAAGGCAAAGGGCAGGACAGAC
CCTTGGAAGCAGCTCTTTTGTTTTGCTTTTTGTTTTGCACAGGAAGATGCTGCTGCTGCCCTGACTGGGATGAGGGTGAGGGGTGATGGGTGTGGCCCTGGATGTGGTGGTTTTCCCTTGGCCACTAG
CCCATCTCCAATGACCCCTTAATCTGCAGCAGCTCACAGGCTGGGGGTGAGGAGCTCCTGACTTCTCTTAGCCTGAGCCTTTCTCCCAAGTTGCAGAGCCTCTCTGGGCCTCAGTGCTGCCATCTGTA
AATGGTGGAGTGAGTATGCTGTAAAGGACCTTCCATCCATTTTGCTGAATTCCAGAGTCCTTTCGGAA

hide sequence

RefSeq Acc Id:

XM_038004056 ⟹ XP_037859984

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666041	159,033,261 - 159,058,130 (+)	NCBI

RefSeq Acc Id:

XM_038004057 ⟹ XP_037859985

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666041	159,033,261 - 159,058,130 (+)	NCBI

RefSeq Acc Id:

XM_038004058 ⟹ XP_037859986

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666041	159,033,261 - 159,058,130 (+)	NCBI


Protein RefSeqs	XP_007982162	(Get FASTA)	NCBI Sequence Viewer
	XP_007982163	(Get FASTA)	NCBI Sequence Viewer
	XP_037859984	(Get FASTA)	NCBI Sequence Viewer
	XP_037859985	(Get FASTA)	NCBI Sequence Viewer
	XP_037859986	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000012279.1

RefSeq Acc Id:	XP_007982162 ⟸ XM_007983971
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RUJ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007982163 ⟸ XM_007983972
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9RUJ0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000012279 ⟸ ENSCSAT00000014303

RefSeq Acc Id:	XP_037859984 ⟸ XM_038004056
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RUJ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037859985 ⟸ XM_038004057
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9RUJ0 (UniProtKB/TrEMBL)

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000016211	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000014303.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1050.80	UniProtKB/TrEMBL
	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	UniProtKB/TrEMBL
InterPro	Alsin_GEFs/MotNeuronReg	UniProtKB/TrEMBL
	MORN	UniProtKB/TrEMBL
	VPS9	UniProtKB/TrEMBL
	VPS9_dom_sf	UniProtKB/TrEMBL
NCBI Gene	ALS2CL	ENTREZGENE
PANTHER	ALS2 C-TERMINAL-LIKE PROTEIN	UniProtKB/TrEMBL
	ALSIN HOMOLOG	UniProtKB/TrEMBL
Pfam	MORN	UniProtKB/TrEMBL
	VPS9	UniProtKB/TrEMBL
PROSITE	VPS9	UniProtKB/TrEMBL
SMART	MORN	UniProtKB/TrEMBL
Superfamily-SCOP	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	UniProtKB/TrEMBL
	SSF109993	UniProtKB/TrEMBL
UniProt	A0A0D9RUJ0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD