Als2cl (ALS2 C-terminal like) - Rat Genome Database
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Gene: Als2cl (ALS2 C-terminal like) Mus musculus
Analyze
Symbol: Als2cl
Name: ALS2 C-terminal like
RGD ID: 1553626
MGI Page MGI
Description: Orthologous to human ALS2CL (ALS2 C-terminal like); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 79H19D; 79H19E; ALS2 C-terminal-like protein; BC022645; D930044G19Rik; mFLJ00189 protein; mRn.490; mRn.49018
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,709,203 - 110,729,598 (+)NCBIGRCm39mm39
GRCm39 Ensembl9110,708,938 - 110,729,598 (+)Ensembl
GRCm389110,880,120 - 110,900,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,879,870 - 110,900,530 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,782,678 - 110,803,034 (+)NCBIGRCm37mm9NCBIm37
MGSCv369110,724,990 - 110,745,340 (+)NCBImm8
Celera9110,606,134 - 110,626,473 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map960.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12140191   PMID:12477932   PMID:15388334   PMID:15449545   PMID:16141072   PMID:16141073   PMID:17219777   PMID:17239822  
PMID:18799693   PMID:21267068   PMID:21677750   PMID:22967998   PMID:27256596  


Genomics

Comparative Map Data
Als2cl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,709,203 - 110,729,598 (+)NCBIGRCm39mm39
GRCm39 Ensembl9110,708,938 - 110,729,598 (+)Ensembl
GRCm389110,880,120 - 110,900,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,879,870 - 110,900,530 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,782,678 - 110,803,034 (+)NCBIGRCm37mm9NCBIm37
MGSCv369110,724,990 - 110,745,340 (+)NCBImm8
Celera9110,606,134 - 110,626,473 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map960.79NCBI
ALS2CL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl346,668,995 - 46,693,704 (-)EnsemblGRCh38hg38GRCh38
GRCh38346,668,995 - 46,693,693 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37346,710,485 - 46,735,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36346,685,683 - 46,710,175 (-)NCBINCBI36hg18NCBI36
Celera346,648,229 - 46,672,945 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef346,753,355 - 46,778,070 (-)NCBIHuRef
CHM1_1346,660,601 - 46,685,319 (-)NCBICHM1_1
Als2cl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28110,863,753 - 110,884,434 (+)NCBI
Rnor_6.0 Ensembl8119,160,731 - 119,174,830 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08119,156,081 - 119,176,680 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08118,494,443 - 118,515,055 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48115,269,448 - 115,287,976 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18115,288,197 - 115,306,337 (+)NCBI
Celera8110,146,276 - 110,166,876 (+)NCBICelera
Cytogenetic Map8q32NCBI
Als2cl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542025,440,641 - 25,455,872 (+)NCBIChiLan1.0ChiLan1.0
ALS2CL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1347,671,265 - 47,695,772 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl347,671,286 - 47,695,772 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0346,568,200 - 46,591,331 (-)NCBIMhudiblu_PPA_v0panPan3
ALS2CL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2042,066,833 - 42,088,321 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12042,067,018 - 42,091,125 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Als2cl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936596506,088 - 525,576 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALS2CL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,596,700 - 29,618,919 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,596,696 - 29,618,915 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,829,891 - 32,901,030 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALS2CL
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,093,439 - 8,116,940 (-)NCBI
ChlSab1.1 Ensembl228,091,528 - 8,110,881 (-)Ensembl
Als2cl
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473074,509,658 - 74,525,221 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2752
Count of miRNA genes:698
Interacting mature miRNAs:878
Transcripts:ENSMUST00000084926, ENSMUST00000123389, ENSMUST00000130386, ENSMUST00000141845, ENSMUST00000143416, ENSMUST00000155014, ENSMUST00000156673
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001146059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001146060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB107016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF481142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE336122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF715088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY721464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ114324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000084926   ⟹   ENSMUSP00000081989
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9110,880,174 - 110,900,524 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123389   ⟹   ENSMUSP00000142853
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9110,880,233 - 110,884,880 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130386   ⟹   ENSMUSP00000123304
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9110,880,206 - 110,900,530 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141845
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9110,886,289 - 110,890,150 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143416
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9110,879,870 - 110,882,722 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155014   ⟹   ENSMUSP00000115718
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9110,880,337 - 110,900,527 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156673
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9110,887,995 - 110,900,528 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200613
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9110,885,748 - 110,887,322 (+)Ensembl
RefSeq Acc Id: NM_001146059   ⟹   NP_001139531
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,242 - 110,729,598 (+)NCBI
GRCm389110,880,174 - 110,900,530 (+)NCBI
MGSCv379110,782,678 - 110,803,034 (+)RGD
Celera9110,606,134 - 110,626,473 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001146060   ⟹   NP_001139532
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,390 - 110,729,598 (+)NCBI
GRCm389110,880,322 - 110,900,530 (+)NCBI
MGSCv379110,782,678 - 110,803,034 (+)RGD
Celera9110,606,134 - 110,626,473 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_146228   ⟹   NP_666340
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,242 - 110,729,598 (+)NCBI
GRCm389110,880,174 - 110,900,530 (+)NCBI
MGSCv379110,782,678 - 110,803,034 (+)RGD
Celera9110,606,134 - 110,626,473 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153354
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,242 - 110,729,598 (+)NCBI
GRCm389110,880,174 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512103   ⟹   XP_006512166
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,231 - 110,729,598 (+)NCBI
GRCm389110,880,143 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313354   ⟹   XP_017168843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,206 - 110,729,598 (+)NCBI
GRCm389110,880,125 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313355   ⟹   XP_017168844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,328 - 110,729,598 (+)NCBI
GRCm389110,880,236 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313356   ⟹   XP_017168845
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,328 - 110,729,598 (+)NCBI
GRCm389110,880,236 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313357   ⟹   XP_017168846
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,328 - 110,729,598 (+)NCBI
GRCm389110,880,236 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313358   ⟹   XP_017168847
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,212 - 110,729,598 (+)NCBI
GRCm389110,880,120 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244350   ⟹   XP_030100210
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,714,466 - 110,729,598 (+)NCBI
GRCm389110,885,398 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778896
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,327 - 110,729,598 (+)NCBI
GRCm389110,880,236 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947890
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,327 - 110,726,860 (+)NCBI
GRCm389110,880,236 - 110,894,074 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947891
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,327 - 110,726,860 (+)NCBI
GRCm389110,880,236 - 110,894,074 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947892
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,203 - 110,729,598 (+)NCBI
GRCm389110,880,125 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947893
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,327 - 110,729,598 (+)NCBI
GRCm389110,880,236 - 110,900,530 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004935433
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,709,279 - 110,729,598 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_666340   ⟸   NM_146228
- UniProtKB: Q60I26 (UniProtKB/Swiss-Prot),   A0A0R4J1X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139531   ⟸   NM_001146059
- UniProtKB: Q60I26 (UniProtKB/Swiss-Prot),   A0A0R4J1X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139532   ⟸   NM_001146060
- UniProtKB: Q60I26 (UniProtKB/Swiss-Prot),   A0A0R4J1X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512166   ⟸   XM_006512103
- Peptide Label: isoform X1
- UniProtKB: Q60I26 (UniProtKB/Swiss-Prot),   A0A0R4J1X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168843   ⟸   XM_017313354
- Peptide Label: isoform X1
- UniProtKB: Q60I26 (UniProtKB/Swiss-Prot),   A0A0R4J1X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168847   ⟸   XM_017313358
- Peptide Label: isoform X1
- UniProtKB: Q60I26 (UniProtKB/Swiss-Prot),   A0A0R4J1X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168845   ⟸   XM_017313356
- Peptide Label: isoform X1
- UniProtKB: Q60I26 (UniProtKB/Swiss-Prot),   A0A0R4J1X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168844   ⟸   XM_017313355
- Peptide Label: isoform X1
- UniProtKB: Q60I26 (UniProtKB/Swiss-Prot),   A0A0R4J1X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168846   ⟸   XM_017313357
- Peptide Label: isoform X1
- UniProtKB: Q60I26 (UniProtKB/Swiss-Prot),   A0A0R4J1X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030100210   ⟸   XM_030244350
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000123304   ⟸   ENSMUST00000130386
RefSeq Acc Id: ENSMUSP00000081989   ⟸   ENSMUST00000084926
RefSeq Acc Id: ENSMUSP00000142853   ⟸   ENSMUST00000123389
RefSeq Acc Id: ENSMUSP00000115718   ⟸   ENSMUST00000155014
Protein Domains
VPS9

Promoters
RGD ID:6844139
Promoter ID:MM_KWN:58945
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver,   Lung,   MEF_B6
Transcripts:ENSMUST00000084927,   NM_001146060,   NM_146228,   OTTMUST00000064141,   OTTMUST00000064145,   OTTMUST00000064146,   UC009RVE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369110,782,444 - 110,782,944 (+)MPROMDB
RGD ID:6844141
Promoter ID:MM_KWN:58946
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000064148
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369110,788,756 - 110,789,256 (+)MPROMDB
RGD ID:8671036
Promoter ID:EPDNEW_M13549
Type:initiation region
Name:Als2cl_2
Description:Mus musculus ALS2 C-terminal like , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13550  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389110,880,172 - 110,880,232EPDNEW
RGD ID:8671038
Promoter ID:EPDNEW_M13550
Type:initiation region
Name:Als2cl_1
Description:Mus musculus ALS2 C-terminal like , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13549  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389110,880,296 - 110,880,356EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2447532 AgrOrtholog
Ensembl Genes ENSMUSG00000044037 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000081989 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000115718 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000123304 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000142853 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000084926 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000123389 UniProtKB/TrEMBL
  ENSMUST00000130386 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000155014 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000156673 ENTREZGENE
Gene3D-CATH 1.20.1050.80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DBL_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MORN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:235633 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2447532 ENTREZGENE
NCBI Gene 235633 ENTREZGENE
Pfam MORN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Als2cl PhenoGen
PROSITE VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MORN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109993 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48065 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JEP6_MOUSE UniProtKB/TrEMBL
  A0A0R4J1X4 ENTREZGENE, UniProtKB/TrEMBL
  AL2CL_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q6KAQ8 UniProtKB/Swiss-Prot
  Q8C0K7 UniProtKB/Swiss-Prot
  Q8K468 UniProtKB/Swiss-Prot
  Q8R222 UniProtKB/Swiss-Prot