CACNB4 (calcium voltage-gated channel auxiliary subunit beta 4) - Rat Genome Database

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Gene: CACNB4 (calcium voltage-gated channel auxiliary subunit beta 4) Chlorocebus sabaeus
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Symbol: CACNB4
Name: calcium voltage-gated channel auxiliary subunit beta 4
RGD ID: 18452562
Description: ENCODES a protein that exhibits high voltage-gated calcium channel activity (ortholog); protein kinase binding (ortholog); voltage-gated calcium channel activity (ortholog); INVOLVED IN adult walking behavior (ortholog); calcium ion transport (ortholog); cAMP metabolic process (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Ataxia (ortholog); dilated cardiomyopathy (ortholog); episodic ataxia (ortholog); FOUND IN glutamatergic synapse (ortholog); nuclear speck (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent L-type calcium channel subunit beta-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11037,240,749 - 37,518,174 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1037,246,991 - 37,388,059 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040162,034,798 - 162,305,942 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACNB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11037,240,749 - 37,518,174 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1037,246,991 - 37,388,059 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040162,034,798 - 162,305,942 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CACNB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382151,832,771 - 152,099,167 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2151,832,771 - 152,099,167 (-)EnsemblGRCh38hg38GRCh38
GRCh372152,689,285 - 152,955,681 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362152,402,382 - 152,663,790 (-)NCBINCBI36Build 36hg18NCBI36
Build 342152,519,650 - 152,655,962NCBI
Celera2146,303,966 - 146,570,260 (-)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2144,575,492 - 144,841,767 (-)NCBIHuRef
CHM1_12152,694,863 - 152,961,451 (-)NCBICHM1_1
T2T-CHM13v2.02152,284,205 - 152,568,400 (-)NCBIT2T-CHM13v2.0
Cacnb4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39252,318,332 - 52,566,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl252,318,337 - 52,566,843 (-)EnsemblGRCm39 Ensembl
GRCm38252,428,320 - 52,676,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl252,428,320 - 52,676,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37252,283,840 - 52,532,101 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36252,250,329 - 52,498,591 (-)NCBIMGSCv36mm8
Celera254,158,343 - 54,407,154 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.98NCBI
Cacnb4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8357,315,900 - 57,578,271 (-)NCBIGRCr8
mRatBN7.2336,906,771 - 37,169,165 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl336,910,427 - 37,168,944 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx340,292,289 - 40,542,372 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0348,877,070 - 49,127,150 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0346,661,653 - 46,912,088 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0337,950,846 - 38,211,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl337,955,069 - 38,090,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0343,050,530 - 43,312,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4333,934,478 - 34,072,070 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1333,830,849 - 34,089,967 (-)NCBI
Celera335,052,892 - 35,186,998 (-)NCBICelera
Cytogenetic Map3q12NCBI
Cacnb4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544017,371,321 - 17,497,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544017,364,996 - 17,497,446 (-)NCBIChiLan1.0ChiLan1.0
CACNB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21354,515,897 - 54,784,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B54,530,877 - 54,798,475 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B39,137,777 - 39,399,007 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B156,373,888 - 156,639,471 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B156,379,469 - 156,639,328 (-)Ensemblpanpan1.1panPan2
CACNB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11952,987,170 - 53,116,410 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1952,993,618 - 53,116,140 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1952,993,618 - 53,116,140 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2628,450,546 - 28,671,051 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01954,498,188 - 54,718,287 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1954,503,946 - 54,718,498 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11953,213,170 - 53,434,776 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01953,283,518 - 53,505,200 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01954,747,989 - 54,969,199 (-)NCBIUU_Cfam_GSD_1.0
Cacnb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303115,871,570 - 116,122,930 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646925,494,883 - 25,740,223 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646925,494,820 - 25,745,783 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15186,434 - 459,856 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115402,801 - 455,691 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap3q14-q21NCBI
Cacnb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248664,973,207 - 5,281,746 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248664,973,087 - 5,287,477 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CACNB4
6033 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000014119   ⟹   ENSCSAP00000012099
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1037,246,991 - 37,388,059 (-)Ensembl
RefSeq Acc Id: XM_007964966   ⟹   XP_007963157
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11037,240,749 - 37,518,174 (-)NCBI
Vero_WHO_p1.0NW_023666040162,034,798 - 162,304,743 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007964968   ⟹   XP_007963159
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11037,240,749 - 37,516,071 (-)NCBI
Vero_WHO_p1.0NW_023666040162,037,008 - 162,305,942 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007964969   ⟹   XP_007963160
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11037,242,826 - 37,387,826 (-)NCBI
Vero_WHO_p1.0NW_023666040162,157,064 - 162,305,942 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007964971   ⟹   XP_007963162
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11037,242,826 - 37,387,824 (-)NCBI
Vero_WHO_p1.0NW_023666040162,157,065 - 162,305,942 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038002130   ⟹   XP_037858058
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666040162,037,518 - 162,305,942 (+)NCBI
RefSeq Acc Id: XM_038002132   ⟹   XP_037858060
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666040162,157,063 - 162,305,942 (+)NCBI
RefSeq Acc Id: XP_007963157   ⟸   XM_007964966
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007963159   ⟸   XM_007964968
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007963160   ⟸   XM_007964969
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RU10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007963162   ⟸   XM_007964971
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037858058   ⟸   XM_038002130
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037858060   ⟸   XM_038002132
- Peptide Label: isoform X5
Ensembl Acc Id: ENSCSAP00000012099   ⟸   ENSCSAT00000014119


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016028 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014119.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro CAB1-4_N_A-dom UniProtKB/TrEMBL
  GK/Ca_channel_bsu UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  VDCC_L_b3su UniProtKB/TrEMBL
  VDCC_L_bsu UniProtKB/TrEMBL
NCBI Gene CACNB4 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT UniProtKB/TrEMBL
Pfam Guanylate_kin UniProtKB/TrEMBL
  VGCC_beta4Aa_N UniProtKB/TrEMBL
PRINTS LCACHANNELB UniProtKB/TrEMBL
  LCACHANNELB3 UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
SMART GuKc UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9RU10 ENTREZGENE, UniProtKB/TrEMBL