PTPRS (protein tyrosine phosphatase receptor type S) - Rat Genome Database

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Gene: PTPRS (protein tyrosine phosphatase receptor type S) Chlorocebus sabaeus
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Symbol: PTPRS
Name: protein tyrosine phosphatase receptor type S
RGD ID: 18403744
Description: ENCODES a protein that exhibits chondroitin sulfate binding (ortholog); heparin binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN cerebellum development (ortholog); cerebral cortex development (ortholog); corpus callosum development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Hearing Loss (ortholog); NATURAL KILLER CELL ENTEROPATHY (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog); presynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: receptor-type tyrosine-protein phosphatase S
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.164,880,942 - 5,019,654 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl64,882,223 - 4,964,919 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660813,106,747 - 3,243,187 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PTPRS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.164,880,942 - 5,019,654 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl64,882,223 - 4,964,919 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660813,106,747 - 3,243,187 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PTPRS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,205,508 - 5,340,812 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,158,495 - 5,340,812 (-)EnsemblGRCh38hg38GRCh38
GRCh37195,205,519 - 5,340,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,156,519 - 5,291,814 (-)NCBINCBI36Build 36hg18NCBI36
Build 34195,157,380 - 5,237,399NCBI
Celera195,143,031 - 5,278,326 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,967,302 - 5,101,977 (-)NCBIHuRef
CHM1_1195,205,046 - 5,340,693 (-)NCBICHM1_1
T2T-CHM13v2.0195,192,102 - 5,327,425 (-)NCBIT2T-CHM13v2.0
Ptprs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,719,426 - 56,783,480 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,719,426 - 56,783,483 (-)EnsemblGRCm39 Ensembl
GRCm381756,412,426 - 56,476,561 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,412,426 - 56,476,483 (-)EnsemblGRCm38mm10GRCm38
MGSCv371756,551,849 - 56,615,903 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,046,141 - 56,110,077 (-)NCBIMGSCv36mm8
Celera1760,758,165 - 60,822,309 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.32NCBI
Ptprs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,332,558 - 1,394,161 (-)NCBIGRCr8
mRatBN7.291,245,408 - 1,307,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,245,410 - 1,306,947 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,691,696 - 1,752,582 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,039,698 - 7,100,595 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,996,746 - 6,057,635 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,585,360 - 10,646,205 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,603,813 - 10,645,939 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,578,004 - 9,637,940 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,203,284 - 7,264,120 (+)NCBICelera
Cytogenetic Map9q11NCBI
Ptprs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,943,170 - 3,990,927 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,943,075 - 3,991,361 (+)NCBIChiLan1.0ChiLan1.0
PTPRS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2209,606,261 - 9,741,280 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,832,498 - 8,967,414 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,227,038 - 4,361,958 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,167,338 - 5,254,343 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,168,599 - 5,247,778 (-)Ensemblpanpan1.1panPan2
PTPRS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,575,853 - 54,672,141 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,575,895 - 54,672,068 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2054,301,762 - 54,397,754 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02055,231,459 - 55,327,738 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2055,231,447 - 55,326,993 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12054,293,104 - 54,389,219 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,773,757 - 54,869,877 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,971,421 - 55,067,624 (+)NCBIUU_Cfam_GSD_1.0
Ptprs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,761,700 - 214,813,370 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,022,321 - 3,072,993 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,021,418 - 3,073,080 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,574,854 - 73,680,686 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,607,815 - 73,680,685 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2274,545,303 - 74,550,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ptprs
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,716,249 - 4,764,614 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,688,555 - 4,764,805 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PTPRS
3964 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007994891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007994905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000008056   ⟹   ENSCSAP00000006208
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl64,882,223 - 4,964,919 (-)Ensembl
RefSeq Acc Id: XM_007994894   ⟹   XP_007993085
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.164,880,947 - 5,019,636 (-)NCBI
Vero_WHO_p1.0NW_0236660813,106,747 - 3,243,187 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007994899   ⟹   XP_007993090
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.164,880,947 - 5,019,654 (-)NCBI
Vero_WHO_p1.0NW_0236660813,106,803 - 3,243,174 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007994904   ⟹   XP_007993095
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.164,880,947 - 5,019,654 (-)NCBI
Vero_WHO_p1.0NW_0236660813,106,803 - 3,243,174 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007994905   ⟹   XP_007993096
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.164,880,947 - 5,019,654 (-)NCBI
Vero_WHO_p1.0NW_0236660813,106,803 - 3,243,174 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037994383   ⟹   XP_037850311
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,154,766 - 3,243,183 (+)NCBI
RefSeq Acc Id: XM_037994384   ⟹   XP_037850312
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,154,767 - 3,243,183 (+)NCBI
RefSeq Acc Id: XM_037994385   ⟹   XP_037850313
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,154,767 - 3,243,183 (+)NCBI
RefSeq Acc Id: XM_037994387   ⟹   XP_037850315
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,154,767 - 3,243,183 (+)NCBI
RefSeq Acc Id: XM_037994388   ⟹   XP_037850316
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,154,767 - 3,243,183 (+)NCBI
RefSeq Acc Id: XM_037994389   ⟹   XP_037850317
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,154,766 - 3,243,183 (+)NCBI
RefSeq Acc Id: XM_037994390   ⟹   XP_037850318
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,187,718 - 3,243,187 (+)NCBI
RefSeq Acc Id: XM_037994391   ⟹   XP_037850319
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,187,718 - 3,243,187 (+)NCBI
RefSeq Acc Id: XM_037994392   ⟹   XP_037850320
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,154,768 - 3,243,183 (+)NCBI
RefSeq Acc Id: XM_037994393   ⟹   XP_037850321
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,154,769 - 3,243,183 (+)NCBI
RefSeq Acc Id: XM_037994394   ⟹   XP_037850322
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660813,154,769 - 3,243,183 (+)NCBI
RefSeq Acc Id: XP_007993096   ⟸   XM_007994905
- Peptide Label: isoform X14
RefSeq Acc Id: XP_007993090   ⟸   XM_007994899
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007993095   ⟸   XM_007994904
- Peptide Label: isoform X13
RefSeq Acc Id: XP_007993085   ⟸   XM_007994894
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000006208   ⟸   ENSCSAT00000008056
RefSeq Acc Id: XP_037850311   ⟸   XM_037994383
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850317   ⟸   XM_037994389
- Peptide Label: isoform X7
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850316   ⟸   XM_037994388
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850313   ⟸   XM_037994385
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850312   ⟸   XM_037994384
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850315   ⟸   XM_037994387
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850320   ⟸   XM_037994392
- Peptide Label: isoform X10
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850321   ⟸   XM_037994393
- Peptide Label: isoform X11
RefSeq Acc Id: XP_037850322   ⟸   XM_037994394
- Peptide Label: isoform X12
RefSeq Acc Id: XP_037850318   ⟸   XM_037994390
- Peptide Label: isoform X8
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850319   ⟸   XM_037994391
- Peptide Label: isoform X9
- UniProtKB: A0A0D9RC69 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010283 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008056.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTPase_domain UniProtKB/TrEMBL
  RTP_Phos/Ushers UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
NCBI Gene PTPRS ENTREZGENE
PANTHER CYTOKINE RECEPTOR UniProtKB/TrEMBL
  PROTEIN-TYROSINE-PHOSPHATASE UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A0D9RC69 ENTREZGENE, UniProtKB/TrEMBL