SCNN1B (sodium channel epithelial 1 subunit beta) - Rat Genome Database

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Gene: SCNN1B (sodium channel epithelial 1 subunit beta) Chlorocebus sabaeus
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Symbol: SCNN1B
Name: sodium channel epithelial 1 subunit beta
RGD ID: 18378598
Description: ENCODES a protein that exhibits ligand-gated sodium channel activity (ortholog); sodium channel activity (ortholog); sodium ion transmembrane transporter activity (ortholog); INVOLVED IN aldosterone metabolic process (ortholog); artery smooth muscle contraction (ortholog); cellular response to aldosterone (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Adrenal Insufficiency (ortholog); autism spectrum disorder (ortholog); autosomal recessive pseudohypoaldosteronism type 1 (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: amiloride-sensitive sodium channel subunit beta; sodium channel epithelial 1 beta subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1521,021,181 - 21,107,746 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl521,022,133 - 21,107,824 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660688,719,000 - 8,805,239 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SCNN1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1521,021,181 - 21,107,746 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl521,022,133 - 21,107,824 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660688,719,000 - 8,805,239 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SCNN1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381623,278,231 - 23,381,294 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1623,278,231 - 23,381,294 (+)EnsemblGRCh38hg38GRCh38
GRCh371623,313,623 - 23,392,615 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361623,221,092 - 23,300,121 (+)NCBINCBI36Build 36hg18NCBI36
Build 341623,221,140 - 23,300,117NCBI
Celera1622,091,376 - 22,169,881 (+)NCBICelera
Cytogenetic Map16p12.2NCBI
HuRef1621,402,990 - 21,480,744 (+)NCBIHuRef
CHM1_11624,325,334 - 24,404,340 (+)NCBICHM1_1
T2T-CHM13v2.01623,554,125 - 23,657,344 (+)NCBIT2T-CHM13v2.0
Scnn1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397121,464,261 - 121,517,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7121,464,261 - 121,517,737 (+)EnsemblGRCm39 Ensembl
GRCm387121,865,038 - 121,918,728 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7121,865,038 - 121,918,514 (+)EnsemblGRCm38mm10GRCm38
MGSCv377129,008,625 - 129,062,030 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367121,656,259 - 121,709,664 (+)NCBIMGSCv36mm8
Celera7121,788,233 - 121,808,466 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map765.07NCBI
Scnn1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81185,861,326 - 185,915,717 (+)NCBIGRCr8
mRatBN7.21176,430,063 - 176,484,451 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1176,430,103 - 176,484,451 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1184,757,955 - 184,812,267 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01191,943,901 - 191,998,213 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,627,931 - 184,682,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01191,829,547 - 191,883,991 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1191,829,555 - 191,884,298 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01198,932,512 - 198,953,453 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41180,682,622 - 180,748,068 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11180,822,536 - 180,887,983 (+)NCBI
Celera1174,140,255 - 174,194,462 (+)NCBICelera
Cytogenetic Map1q36NCBI
Scnn1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554931,904,220 - 1,956,303 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554931,937,507 - 1,956,248 (+)NCBIChiLan1.0ChiLan1.0
SCNN1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21824,712,414 - 24,794,054 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11629,231,645 - 29,312,685 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01614,728,834 - 14,809,072 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11623,555,391 - 23,634,873 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1623,555,388 - 23,634,873 (+)Ensemblpanpan1.1panPan2
SCNN1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1622,439,643 - 22,481,349 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl622,439,643 - 22,481,349 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha624,003,147 - 24,044,601 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0622,579,419 - 22,621,104 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl622,579,419 - 22,621,104 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1622,383,826 - 22,425,285 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0622,286,935 - 22,328,601 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0622,681,830 - 22,723,544 (-)NCBIUU_Cfam_GSD_1.0
Scnn1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344119,923,171 - 119,968,392 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365018,020,316 - 8,065,332 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365018,021,090 - 8,065,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCNN1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl322,832,262 - 22,902,063 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1322,832,259 - 22,902,592 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.210271,050 - 337,906 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Scnn1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247828,549,583 - 8,581,819 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247828,521,639 - 8,580,099 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SCNN1B
3130 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
66 30 17 27 27 56 20

Sequence


Ensembl Acc Id: ENSCSAT00000004951   ⟹   ENSCSAP00000003196
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl521,022,133 - 21,107,824 (+)Ensembl
RefSeq Acc Id: XM_007987867   ⟹   XP_007986058
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1521,021,181 - 21,107,746 (+)NCBI
Vero_WHO_p1.0NW_0236660688,719,000 - 8,805,239 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007986058 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003196.1
RefSeq Acc Id: XP_007986058   ⟸   XM_007987867
- UniProtKB: A0A0D9R3K7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003196   ⟸   ENSCSAT00000004951


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006908 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004951.1 UniProtKB/TrEMBL
Gene3D-CATH Acid-sensing ion channels like domains UniProtKB/TrEMBL
  YojJ-like UniProtKB/TrEMBL
InterPro ENaC UniProtKB/TrEMBL
  ENaC_chordates UniProtKB/TrEMBL
  ENaC_CS UniProtKB/TrEMBL
NCBI Gene SCNN1B ENTREZGENE
PANTHER AMILORIDE-SENSITIVE SODIUM CHANNEL SUBUNIT BETA UniProtKB/TrEMBL
  PTHR11690 UniProtKB/TrEMBL
Pfam ASC UniProtKB/TrEMBL
PRINTS AMINACHANNEL UniProtKB/TrEMBL
PROSITE ASC UniProtKB/TrEMBL
UniProt A0A0D9R3K7 ENTREZGENE, UniProtKB/TrEMBL