EPHA6 (EPH receptor A6) - Rat Genome Database

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Gene: EPHA6 (EPH receptor A6) Chlorocebus sabaeus
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Symbol: EPHA6
Name: EPH receptor A6
RGD ID: 18359171
Description: PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Bardet-Biedl syndrome 3 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ephrin type-A receptor 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,960,714 - 83,914,993 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604182,679,583 - 83,623,162 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EPHA6Green MonkeyBardet-Biedl syndrome 3  ISORGD:16055468554872ClinVar Annotator: match by term: Bardet-Biedl syndrome 3ClinVarPMID:15258860|PMID:19858128|PMID:20142850|PMID:22334370|PMID:27486776|PMID:28492532|PMID:31736247


Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EPHA6Green Monkeyprotein binding enablesISOUniProtKB:P293179068941 PMID:33961781IntActPMID:33961781
EPHA6Green Monkeyprotein binding enablesISOUniProtKB:Q047719068941 PMID:31483918IntActPMID:31483918
EPHA6Green Monkeyprotein binding enablesISOUniProtKB:P29317|UniProtKB:P547609068941 PMID:35384245IntActPMID:35384245

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EPHA6Green Monkeyephrin - ephrin receptor bidirectional signaling axis  ISORGD:16055469068941 PIDPID:200142
PMID:22301074   PMID:30032202  



EPHA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,960,714 - 83,914,993 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604182,679,583 - 83,623,162 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
EPHA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38396,814,594 - 97,761,532 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl396,814,581 - 97,761,532 (+)EnsemblGRCh38hg38GRCh38
GRCh37396,533,438 - 97,480,376 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36398,016,115 - 98,950,476 (+)NCBINCBI36Build 36hg18NCBI36
Celera394,916,109 - 95,857,365 (+)NCBICelera
Cytogenetic Map3q11.2NCBI
HuRef393,902,924 - 94,837,692 (+)NCBIHuRef
CHM1_1396,496,480 - 97,430,819 (+)NCBICHM1_1
T2T-CHM13v2.0399,518,416 - 100,468,755 (+)NCBIT2T-CHM13v2.0
Epha6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391659,473,424 - 60,431,196 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1659,473,846 - 60,425,894 (-)EnsemblGRCm39 Ensembl
GRCm381659,641,433 - 60,610,911 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1659,653,483 - 60,605,531 (-)EnsemblGRCm38mm10GRCm38
MGSCv371659,653,309 - 60,605,357 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361659,595,739 - 60,547,503 (-)NCBIMGSCv36mm8
Celera1660,004,715 - 60,923,397 (-)NCBICelera
Cytogenetic Map16C1.3NCBI
cM Map1634.83NCBI
Epha6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81153,226,784 - 54,178,120 (+)NCBIGRCr8
mRatBN7.21139,757,501 - 40,708,901 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1139,757,181 - 40,698,311 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01141,867,607 - 42,843,800 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1142,259,761 - 42,843,865 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01145,066,461 - 46,035,688 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,551,554 - 41,458,539 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,597,889 - 41,024,933 (+)NCBI
Celera1139,606,772 - 40,545,970 (+)NCBICelera
Cytogenetic Map11q12NCBI
Epha6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955407400,745 - 1,220,538 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955407398,415 - 1,220,542 (-)NCBIChiLan1.0ChiLan1.0
EPHA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2294,719,146 - 95,674,832 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1394,723,932 - 95,679,616 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0393,881,686 - 94,819,563 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13100,562,841 - 101,504,222 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3100,734,791 - 101,503,805 (+)Ensemblpanpan1.1panPan2
EPHA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1333,990,346 - 4,786,070 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl334,517,039 - 4,684,336 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha334,093,700 - 4,967,547 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0334,023,454 - 4,896,341 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1333,901,331 - 4,772,858 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0333,961,065 - 4,833,214 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0334,235,497 - 5,107,565 (+)NCBIUU_Cfam_GSD_1.0
Epha6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602152,451,572 - 153,234,891 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366662,282,000 - 3,061,944 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366662,280,811 - 3,063,601 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPHA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13162,569,479 - 163,443,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113162,568,835 - 163,445,722 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213173,570,910 - 173,735,724 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Epha6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247899,281,370 - 10,209,495 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247899,279,440 - 10,211,840 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in EPHA6
25516 total Variants






RefSeq Acc Id: XM_007986128   ⟹   XP_007984319
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12282,960,714 - 83,914,990 (-)NCBI
Vero_WHO_p1.0NW_02366604182,679,586 - 83,623,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986130   ⟹   XP_007984321
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12282,960,714 - 83,914,987 (-)NCBI
Vero_WHO_p1.0NW_02366604182,679,587 - 83,623,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986131   ⟹   XP_007984322
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12282,960,714 - 83,914,989 (-)NCBI
Vero_WHO_p1.0NW_02366604182,679,586 - 83,623,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986132   ⟹   XP_007984323
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12282,960,714 - 83,914,993 (-)NCBI
Vero_WHO_p1.0NW_02366604182,679,583 - 83,623,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986133   ⟹   XP_007984324
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12282,960,714 - 83,859,090 (-)NCBI
Vero_WHO_p1.0NW_02366604182,681,195 - 83,623,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986134   ⟹   XP_007984325
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12282,960,714 - 83,859,107 (-)NCBI
Vero_WHO_p1.0NW_02366604182,681,261 - 83,623,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986136   ⟹   XP_007984327
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12282,960,714 - 83,914,520 (-)NCBI
Vero_WHO_p1.0NW_02366604182,681,229 - 83,623,162 (+)NCBI
Sequence:
Protein RefSeqs XP_007984321 (Get FASTA)   NCBI Sequence Viewer  
  XP_072865769 (Get FASTA)   NCBI Sequence Viewer  
  XP_072865770 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_007984323   ⟸   XM_007986132
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007984319   ⟸   XM_007986128
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007984322   ⟸   XM_007986131
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007984321   ⟸   XM_007986130
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007984327   ⟸   XM_007986136
- Peptide Label: isoform X7



Database
Acc Id
Source(s)
NCBI Gene EPHA6 ENTREZGENE