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Gene: Rwdd3 (RWD domain containing 3) Mus musculus

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Symbol:

Rwdd3

Name:

RWD domain containing 3

RGD ID:

1622321

MGI Page

MGI

Description:

Acts upstream of or within positive regulation of hypoxia-inducible factor-1alpha signaling pathway. Predicted to be located in cytoplasm and nucleus. Is expressed in cerebral cortex subventricular zone. Orthologous to human RWDD3 (RWD domain containing 3).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2510027J23Rik; 3110037C01Rik; AI035684; AI662458; RSU; Rsume; RWD domain-containing protein 3; RWD domain-containing sumoylation enhancer; RWD-containing sumoylation enhancer; X2CR1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RWDD3 (RWD domain containing 3)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Rwdd3 (RWD domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rwdd3 (RWD domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RWDD3 (RWD domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RWDD3 (RWD domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rwdd3 (RWD domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RWDD3 (RWD domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RWDD3 (RWD domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rwdd3 (RWD domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rwdd3 (RWD domain containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RWDD3 (RWD domain containing 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rwdd3 (RWD domain containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Xenopus tropicalis (tropical clawed frog):	rwdd3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	120,949,046 - 120,965,427 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	120,949,047 - 120,965,344 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	121,155,397 - 121,171,781 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	121,155,398 - 121,171,695 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	120,858,318 - 120,874,613 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	121,163,006 - 121,163,717 (-)	NCBI		MGSCv36	mm8
Celera	3	127,503,418 - 127,519,689 (-)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI
cM Map	3	52.94	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rwdd3	Mouse	17beta-estradiol	affects expression	ISO	RWDD3 (Homo sapiens)	6480464	Estradiol affects the expression of RWDD3 mRNA	CTD	PMID:22574217
Rwdd3	Mouse	17beta-estradiol	decreases expression	EXP		6480464	Estradiol results in decreased expression of RWDD3 mRNA	CTD	PMID:39298647
Rwdd3	Mouse	17beta-estradiol	decreases expression	ISO	RWDD3 (Homo sapiens)	6480464	Estradiol results in decreased expression of RWDD3 mRNA	CTD	PMID:23019147
Rwdd3	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of RWDD3 mRNA	CTD	PMID:21570461
Rwdd3	Mouse	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in increased expression of RWDD3 mRNA	CTD	PMID:33387578
Rwdd3	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of RWDD3 mRNA	CTD	PMID:25975270
Rwdd3	Mouse	2,6-dinitrotoluene	affects expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	2 and 6-dinitrotoluene affects the expression of RWDD3 mRNA	CTD	PMID:21346803
Rwdd3	Mouse	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	RWDD3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of RWDD3 mRNA	CTD	PMID:28628672
Rwdd3	Mouse	4,4'-sulfonyldiphenol	multiple interactions	ISO	RWDD3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of RWDD3 mRNA	CTD	PMID:28628672
Rwdd3	Mouse	4,4'-sulfonyldiphenol	decreases expression	EXP		6480464	bisphenol S results in decreased expression of RWDD3 mRNA	CTD	PMID:39298647
Rwdd3	Mouse	6-propyl-2-thiouracil	decreases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Propylthiouracil results in decreased expression of RWDD3 mRNA	CTD	PMID:30047161
Rwdd3	Mouse	amitrole	decreases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Amitrole results in decreased expression of RWDD3 mRNA	CTD	PMID:30047161
Rwdd3	Mouse	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of RWDD3 mRNA	CTD	PMID:19770486
Rwdd3	Mouse	benzo[a]pyrene	affects methylation	ISO	RWDD3 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of RWDD3 promoter	CTD	PMID:27901495
Rwdd3	Mouse	bisphenol A	increases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of RWDD3 mRNA	CTD	PMID:25181051
Rwdd3	Mouse	bisphenol F	decreases expression	EXP		6480464	bisphenol F results in decreased expression of RWDD3 mRNA	CTD	PMID:38685157
Rwdd3	Mouse	calcium silicate	increases expression	EXP		6480464	calcium silicate results in increased expression of RWDD3 mRNA	CTD	PMID:29279043
Rwdd3	Mouse	camptothecin	increases expression	ISO	RWDD3 (Homo sapiens)	6480464	Camptothecin results in increased expression of RWDD3 mRNA	CTD	PMID:33770205
Rwdd3	Mouse	carbon nanotube	decreases expression	EXP		6480464	Nanotubes and Carbon results in decreased expression of RWDD3 mRNA	CTD	PMID:25554681
Rwdd3	Mouse	chlorpyrifos	decreases expression	EXP		6480464	Chlorpyrifos results in decreased expression of RWDD3 mRNA	CTD	PMID:32715474
Rwdd3	Mouse	clofibrate	decreases expression	EXP		6480464	Clofibrate results in decreased expression of RWDD3 mRNA	CTD	PMID:23811191
Rwdd3	Mouse	copper(II) sulfate	decreases expression	ISO	RWDD3 (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of RWDD3 mRNA	CTD	PMID:19549813
Rwdd3	Mouse	cyclosporin A	decreases expression	ISO	RWDD3 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of RWDD3 mRNA	CTD	PMID:20106945 and PMID:25562108
Rwdd3	Mouse	dexamethasone	multiple interactions	ISO	RWDD3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of RWDD3 mRNA	CTD	PMID:28628672
Rwdd3	Mouse	dicrotophos	decreases expression	ISO	RWDD3 (Homo sapiens)	6480464	dicrotophos results in decreased expression of RWDD3 mRNA	CTD	PMID:28302478
Rwdd3	Mouse	furan	increases methylation	ISO	Rwdd3 (Rattus norvegicus)	6480464	furan results in increased methylation of RWDD3 gene	CTD	PMID:22079235
Rwdd3	Mouse	gentamycin	increases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Gentamicins results in increased expression of RWDD3 mRNA	CTD	PMID:33387578
Rwdd3	Mouse	indometacin	multiple interactions	ISO	RWDD3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of RWDD3 mRNA	CTD	PMID:28628672
Rwdd3	Mouse	methamphetamine	decreases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Methamphetamine results in decreased expression of RWDD3 mRNA	CTD	PMID:19564919
Rwdd3	Mouse	methimazole	decreases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Methimazole results in decreased expression of RWDD3 mRNA	CTD	PMID:30047161
Rwdd3	Mouse	methotrexate	increases expression	ISO	RWDD3 (Homo sapiens)	6480464	Methotrexate results in increased expression of RWDD3 mRNA	CTD	PMID:33770205
Rwdd3	Mouse	methylparaben	decreases expression	ISO	RWDD3 (Homo sapiens)	6480464	methylparaben results in decreased expression of RWDD3 mRNA	CTD	PMID:31745603
Rwdd3	Mouse	niclosamide	decreases expression	ISO	RWDD3 (Homo sapiens)	6480464	Niclosamide results in decreased expression of RWDD3 mRNA	CTD	PMID:36318118
Rwdd3	Mouse	phenobarbital	decreases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Phenobarbital results in decreased expression of RWDD3 mRNA	CTD	PMID:30047161
Rwdd3	Mouse	silicon dioxide	decreases expression	EXP		6480464	Silicon Dioxide results in decreased expression of RWDD3 mRNA	CTD	PMID:19073995
Rwdd3	Mouse	sodium fluoride	increases expression	EXP		6480464	Sodium Fluoride results in increased expression of RWDD3 mRNA	CTD	PMID:27862939
Rwdd3	Mouse	Soman	decreases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Soman results in decreased expression of RWDD3 mRNA	CTD	PMID:19281266
Rwdd3	Mouse	sulfadimethoxine	decreases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Sulfadimethoxine results in decreased expression of RWDD3 mRNA	CTD	PMID:30047161
Rwdd3	Mouse	sunitinib	decreases expression	ISO	RWDD3 (Homo sapiens)	6480464	Sunitinib results in decreased expression of RWDD3 mRNA	CTD	PMID:31533062
Rwdd3	Mouse	tetraphene	increases expression	EXP		6480464	benz(a)anthracene results in increased expression of RWDD3 mRNA	CTD	PMID:26377693
Rwdd3	Mouse	thioacetamide	decreases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Thioacetamide results in decreased expression of RWDD3 mRNA	CTD	PMID:34492290
Rwdd3	Mouse	titanium dioxide	increases expression	EXP		6480464	titanium dioxide results in increased expression of RWDD3 mRNA	CTD	PMID:23557971
Rwdd3	Mouse	trichloroethene	increases expression	ISO	Rwdd3 (Rattus norvegicus)	6480464	Trichloroethylene results in increased expression of RWDD3 mRNA	CTD	PMID:33387578
Rwdd3	Mouse	trichostatin A	affects expression	ISO	RWDD3 (Homo sapiens)	6480464	trichostatin A affects the expression of RWDD3 mRNA	CTD	PMID:28542535
Rwdd3	Mouse	triphenyl phosphate	affects expression	ISO	RWDD3 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of RWDD3 mRNA	CTD	PMID:37042841
Rwdd3	Mouse	valproic acid	decreases expression	ISO	RWDD3 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of RWDD3 mRNA	CTD	PMID:23179753
Rwdd3	Mouse	vorinostat	decreases expression	ISO	RWDD3 (Homo sapiens)	6480464	Vorinostat results in decreased expression of RWDD3 mRNA	CTD	PMID:33770205

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rwdd3	Mouse	negative regulation of NF-kappaB transcription factor activity	involved_in	ISO	UniProtKB:Q9Y3V2	2290270		GO_Central	GO_REF:0000119
Rwdd3	Mouse	negative regulation of NF-kappaB transcription factor activity	involved_in	ISS	UniProtKB:Q9Y3V2	2290270		UniProt	GO_REF:0000024
Rwdd3	Mouse	positive regulation of hypoxia-inducible factor-1alpha signaling pathway	involved_in	ISO	UniProtKB:Q9Y3V2	2290270		GO_Central	GO_REF:0000119
Rwdd3	Mouse	positive regulation of hypoxia-inducible factor-1alpha signaling pathway	acts_upstream_of_or_within	IMP		2290270	PMID:22009797	MGI	PMID:22009797
Rwdd3	Mouse	positive regulation of hypoxia-inducible factor-1alpha signaling pathway	involved_in	IBA	PANTHER:PTN002695369 and MGI:1920420	2290270		GO_Central	GO_REF:0000033
Rwdd3	Mouse	positive regulation of hypoxia-inducible factor-1alpha signaling pathway	involved_in	ISS	UniProtKB:Q9Y3V2	2290270		UniProt	GO_REF:0000024
Rwdd3	Mouse	positive regulation of protein sumoylation	involved_in	ISS	UniProtKB:Q9Y3V2	2290270		UniProt	GO_REF:0000024
Rwdd3	Mouse	positive regulation of protein sumoylation	involved_in	ISO	UniProtKB:Q9Y3V2	2290270		GO_Central	GO_REF:0000119

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rwdd3	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015
Rwdd3	Mouse	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	2290270		UniProt	GO_REF:0000044
Rwdd3	Mouse	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	2290270		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rwdd3	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015
Rwdd3	Mouse	protein binding	enables	ISO	UniProtKB:P63165 and UniProtKB:P63279	9068941	PMID:17956732	IntAct	PMID:17956732
Rwdd3	Mouse	protein binding	enables	ISO	UniProtKB:P25963 more ...	9068941	PMID:23469069	UniProt	PMID:23469069

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rwdd3	Mouse	decreased grip strength		IEA		5509061		MGI
Rwdd3	Mouse	preweaning lethality, complete penetrance		IEA		5509061		MGI
Rwdd3	Mouse	prolonged ST segment		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:12040188	PMID:12477932	PMID:16141072	PMID:16141073	PMID:17956732	PMID:18725516	PMID:21267068	PMID:21677750	PMID:21873635
PMID:22009797	PMID:27626380	PMID:30635555	PMID:34321999	PMID:38355793

Rwdd3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	120,949,046 - 120,965,427 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	120,949,047 - 120,965,344 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	121,155,397 - 121,171,781 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	121,155,398 - 121,171,695 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	120,858,318 - 120,874,613 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	121,163,006 - 121,163,717 (-)	NCBI		MGSCv36	mm8
Celera	3	127,503,418 - 127,519,689 (-)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI
cM Map	3	52.94	NCBI

RWDD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	95,234,155 - 95,247,225 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	95,234,210 - 95,247,225 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	95,699,711 - 95,712,781 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	95,472,299 - 95,485,369 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	95,411,787 - 95,424,794	NCBI
Celera	1	93,954,133 - 93,967,204 (+)	NCBI		Celera
Cytogenetic Map	1	p21.3	NCBI
HuRef	1	93,821,651 - 93,834,724 (+)	NCBI		HuRef
CHM1_1	1	95,814,224 - 95,827,606 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	95,082,240 - 95,095,318 (+)	NCBI		T2T-CHM13v2.0

Rwdd3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	211,918,361 - 211,933,644 (-)	NCBI		GRCr8
mRatBN7.2	2	209,233,622 - 209,254,842 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	209,233,622 - 209,248,853 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	216,874,398 - 216,890,050 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	214,800,350 - 214,815,993 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	209,641,329 - 209,657,063 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	224,710,351 - 224,723,136 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	224,710,348 - 224,723,112 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	242,756,616 - 242,769,365 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	217,738,411 - 217,753,572 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	217,703,915 - 217,704,175 (-)	NCBI
Celera	2	201,668,749 - 201,684,356 (-)	NCBI		Celera
Cytogenetic Map	2	q42	NCBI

Rwdd3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	398,718 - 412,466 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	398,707 - 412,476 (+)	NCBI	ChiLan1.0	ChiLan1.0

RWDD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	131,774,332 - 131,792,072 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	130,930,176 - 130,944,559 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	97,895,972 - 97,909,114 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	96,622,134 - 96,634,902 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	96,622,140 - 96,634,894 (+)	Ensembl	panpan1.1		panPan2

RWDD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	54,082,061 - 54,094,218 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	54,079,751 - 54,086,489 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	56,778,401 - 56,791,978 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	54,451,562 - 54,465,141 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	54,453,931 - 54,465,403 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	54,126,117 - 54,139,693 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	54,113,046 - 54,126,612 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	54,565,794 - 54,579,372 (-)	NCBI		UU_Cfam_GSD_1.0

Rwdd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	104,916,011 - 104,928,636 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936537	4,017,661 - 4,031,981 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936537	4,019,337 - 4,031,951 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RWDD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	122,187,952 - 122,203,115 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	122,187,949 - 122,203,146 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	133,994,941 - 133,997,650 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RWDD3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	38,004,334 - 38,021,344 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	80,048,896 - 80,063,445 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rwdd3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	2,407,512 - 2,458,249 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	2,407,055 - 2,420,425 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rwdd3
1144 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	926
Count of miRNA genes:	473
Interacting mature miRNAs:	565
Transcripts:	ENSMUST00000039761, ENSMUST00000098650, ENSMUST00000106465, ENSMUST00000106466, ENSMUST00000106467, ENSMUST00000164573, ENSMUST00000164925, ENSMUST00000164968, ENSMUST00000170781
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300752	Ap6q_m	alcohol preference 6 QTL (mouse)			Not determined		3	100372912	147045722	Mouse
1558868	Ses9_m	salmonella enteritidis susceptibility 9 (mouse)			Not determined		3	119057332	153057456	Mouse
26884382	Bzwq1_m	bi-zygomatic width QTL 1, 5 week (mouse)					3	52207421	137205761	Mouse
12910796	Pwbwq6_m	post-weaning body weight QTL 6 (mouse)					3	110084357	135715812	Mouse
12738440	Twq3_m	testis weight QTL 3 (mouse)					3	87228015	121228015	Mouse
25314313	Syncl1_m	synaptonemal complex length 1 (mouse)					3	67907333	128393649	Mouse
12910793	Pwbwq7_m	post-weaning body weight QTL 7 (mouse)					3	110084357	135715812	Mouse
26884436	Zlq3_m	zygomatic length QTL 3, 10 week (mouse)					3	3265060	142405761	Mouse
4142449	Tgq14_m	triglyceride QTL 14 (mouse)			Not determined			119318586	153318586	Mouse
10412240	Alpq6_m	alcohol preference QTL 6 (mouse)			Not determined		3	120772078	154772078	Mouse
11533920	Mvb3_m	modifier of vibrator 3 (mouse)					3	98635284	132635383	Mouse
4141935	Tgq15_m	triglyceride QTL 15 (mouse)			Not determined			119318586	153318586	Mouse
10766455	Sle22_m	systematic lupus erythematosus susceptibility 22 (mouse)					3	90376936	124377072	Mouse
1302151	Lprm2_m	lymphoproliferation modifier 2 (mouse)			Not determined		3	119778857	153779044	Mouse
1301381	Bomb1_m	bone marrow pre-B 1 (mouse)			Not determined		3	111133243	145133417	Mouse
10043919	Afpq8_m	abdominal fat percent QTL 8 (mouse)			Not determined		3	119057332	153057456	Mouse
14747001	Mancz4_m	mandible centroid size 4 (mouse)					3	90378017	124378017	Mouse
1300619	Cdcs1_m	cytokine deficiency colitis susceptibility 1 (mouse)			Not determined		3	109834882	143835005	Mouse
26884419	Bzwq6_m	bi-zygomatic width QTL 6, 10 week (mouse)					3	100607316	137205761	Mouse
1301705	Sles3_m	systemic lupus erythmatosus suppressor 3 (mouse)			Not determined		3	37174862	143353183	Mouse
12910815	Ogrq1_m	overall growth rate QTL 1 (mouse)					3	110084357	135715812	Mouse
13207570	Tcq12_m	total cholesterol QTL 12 (mouse)					3	16504164	130163649	Mouse
1357583	Sle18_m	systematic lupus erythematosus susceptibility 18 (mouse)			Not determined		3	87208904	125316236	Mouse
12792984	Modn1_m	modifier of Dstn neovascularization 1 (mouse)					3	98635284	132635383	Mouse
4142178	Ctrq2_m	C. trachomatis resistance QTL 2 (mouse)			Not determined		3	89139967	137453008	Mouse
1302093	Orgwq5_m	organ weight QTL 5 (mouse)			Not determined		3	107376936	147304689	Mouse
10043955	Wt10q4_m	body weight, 10 weeks, QTL 4 (mouse)			Not determined		3	98624041	132624197	Mouse
8655599	Cia5c_m	collagen induced arthritis QTL 5c (mouse)			Not determined		3	107376936	125316237	Mouse
1302114	Tbs1_m	tuberculosis severity 1 (mouse)			Not determined		3	98924105	132924250	Mouse
27226733	Tibmd6_m	tibia midshaft diameter 6, 16 week (mouse)					3	101307316	149805637	Mouse
27226732	Tibmd3_m	tibia midshaft diameter 3, 10 week (mouse)					3	96607316	147805636	Mouse
1301349	Pgia26_m	proteoglycan induced arthritis 26 (mouse)			Not determined		3	92251533	126251650	Mouse
1302052	Etohcta4_m	ethanol conditioned taste aversion 4 (mouse)			Not determined		3	91000105	125008748	Mouse
1302056	Orgwq4_m	organ weight QTL 4 (mouse)			Not determined		3	30067588	147304689	Mouse
1301805	Mors2_m	modifier of obesity related sterility 2 (mouse)			Not determined		3	103482659	137482783	Mouse
1301100	Bdt2_m	bone density traits 2 (mouse)			Not determined		3	114736617	148736784	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_025637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_028456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011240195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004941379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_867227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC161506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF439556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF439557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF439558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK014130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK134288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC037515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC139340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC139342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC150838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY710389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY744183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000039761 ⟹ ENSMUSP00000040826

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	120,949,514 - 120,965,343 (-)	Ensembl
GRCm38.p6 Ensembl	3	121,155,865 - 121,171,694 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000098650

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	120,962,820 - 120,965,343 (-)	Ensembl
GRCm38.p6 Ensembl	3	121,169,171 - 121,171,694 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000106465

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	120,951,656 - 120,965,344 (-)	Ensembl
GRCm38.p6 Ensembl	3	121,158,007 - 121,171,695 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000106466 ⟹ ENSMUSP00000102074

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	120,949,047 - 120,965,344 (-)	Ensembl
GRCm38.p6 Ensembl	3	121,155,398 - 121,171,695 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000106467 ⟹ ENSMUSP00000102075

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	120,949,588 - 120,965,343 (-)	Ensembl
GRCm38.p6 Ensembl	3	121,155,939 - 121,171,694 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000164573 ⟹ ENSMUSP00000130734

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	120,949,492 - 120,952,468 (-)	Ensembl
GRCm38.p6 Ensembl	3	121,155,843 - 121,158,819 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000164925 ⟹ ENSMUSP00000133036

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	120,949,927 - 120,965,344 (-)	Ensembl
GRCm38.p6 Ensembl	3	121,156,278 - 121,171,695 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000164968

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	120,949,049 - 120,950,469 (-)	Ensembl
GRCm38.p6 Ensembl	3	121,155,400 - 121,156,820 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000170781 ⟹ ENSMUSP00000129262

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	120,949,495 - 120,965,337 (-)	Ensembl
GRCm38.p6 Ensembl	3	121,155,846 - 121,171,688 (-)	Ensembl

RefSeq Acc Id:

NM_025637 ⟹ NP_079913

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	120,949,049 - 120,965,344 (-)	NCBI
GRCm38	3	121,155,400 - 121,171,695 (-)	NCBI
Celera	3	127,503,418 - 127,519,689 (-)	NCBI

Sequence:

show sequence

GGGTTCTGGTCGCACGGATATGGTGGAGGAGGTGCGGCAGGAGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGACGGTGCGCAGTGCCCTCCTCGTG
AAACCCAGCTCCTCCAAATAGTCGGCATCCACCATAAGCATTTGTGTATCACGTCCCTGACAACAGGACGCTGTAGTTGGTTGTCAGCCACGTGGAAGGCAGTCAGGAAATGCTTGTTAAGGCTGCTG
AAAAATGGCAGCCGATTCCAGACTTCTGCTGGACGCAGCATGGAGACCTTCTCTTCTAACCCAGAGACAGATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGAGGATGTGCC
CTTAGAGTTGGCGTTCCATTTACCAGTTGGTTACCCTTTGTGTCTACCCGGCATCTCGGTTACCTCGGAACATCTGACCAGGGCCCAGTGTGTTACCGCGAAGGAGAAGTTACTTGGAGAAGCCAGGA
AGCTCGTGTCAGAACCGATGGTTCACGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACTTGTCCTCAGCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGG
GACGATGGACCGTGGATGACTCTTTTGCGTTTAGATCACATGAGAGCGAGGACTAAATATGTCAAAGCCGTGGAGAAGTGGGCTTCAGAGTTAAGGCTGACAGGAAGACTGATGTTCATGGGTAAATT
AATACTGATTTTACTACAAGGAGACAGAAGCAACATCAAGGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCAAAGAGAAAATGATTAGTGTACTGTCTG
AAACAAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTCTTCTCAGAGTGTGTACTG
GGGCTGGTGAAATGAGGAAGAAAAGCGAGTCCTGTTTTATGGAATATTAAACATGAAAAGATCCCATATATTCTAACGTTTGCCAGAAAAGACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGA
AACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAATTTGTTTAGAACTCTGCAATTTTCAGGCTAATTTTCTCGTAATTAAATGATTTCTTAAAGTGATTTGTTTTCATGTTTACTTTCTCA
TGTTTATGTTTTTTGCCTTTAATCGTGCCTTCCTCCCCACTCTGCTTATTATGTTTTAAGTTGGATGTTGAGAAAAATCTAACACTCATTTCTTGGTGCGGTTGCATAAATCGTTGGATTAAATACAA
AACCAAGAAGTTTTACAGAACACAGTTGCTTTCTGGAGAGCTGGAAGAATACACAGTGAGTTCAAATCGAAATTCATATGTGAAAAAAATAATTTCTGGTTTTACAAGGAAAATGTGTCCAACAAAGT
GAACCCTTTTTATTTTTTTTGGTGGAAAAACAAACCAAACTGTAGCTCTACAATTTTCATTGTGAAATCTCTCAAATAATGGTAAAATGTACTAACTATGTCCAAGGGGAGATAAACTCGCAGCATAA
TTATTTATATTAAAATTTATGATGAAATGTAAAA

hide sequence

RefSeq Acc Id:

NM_028456 ⟹ NP_082732

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	120,949,049 - 120,965,344 (-)	NCBI
GRCm38	3	121,155,400 - 121,171,695 (-)	NCBI
Celera	3	127,503,418 - 127,519,689 (-)	NCBI

Sequence:

show sequence

GGGTTCTGGTCGCACGGATATGGTGGAGGAGGTGCGGCAGGAGCTCTCGGCGCTGGCCGCGATC
TTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGAGACAGATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGAGGATGTGCCCTTAGAGTTGGCGTTCCATTTACC
AGTTGGTTACCCTTTGTGTCTACCCGGCATCTCGGTTACCTCGGAACATCTGACCAGGGCCCAGTGTGTTACCGCGAAGGAGAAGTTACTTGGAGAAGCCAGGAAGCTCGTGTCAGAACCGATGGTTC
ACGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACTTGTCCTCAGCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGATGGACCGTGGATGACTCTT
TTGCGTTTAGATCACATGAGAGCGAGGACTAAATATGTCAAAGCCGTGGAGAAGTGGGCTTCAGAGTTAAGGCTGACAGGAAGACTGATGTTCATGGGTAAATTAATACTGATTTTACTACAAGGAGA
CAGAAGCAACATCAAGGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCAAAGAGAAAATGATTAGTGTACTGTCTGAAACAAAAGTACAAACGGAACACA
AAAGGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTCTTCTCAGAGTGTGTACTGGGGCTGGTGAAATGAGGAAGAAAA
GCGAGTCCTGTTTTATGGAATATTAAACATGAAAAGATCCCATATATTCTAACGTTTGCCAGAAAAGACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGT
TGTTTTTATAGAGACAATTTGTTTAGAACTCTGCAATTTTCAGGCTAATTTTCTCGTAATTAAATGATTTCTTAAAGTGATTTGTTTTCATGTTTACTTTCTCATGTTTATGTTTTTTGCCTTTAATC
GTGCCTTCCTCCCCACTCTGCTTATTATGTTTTAAGTTGGATGTTGAGAAAAATCTAACACTCATTTCTTGGTGCGGTTGCATAAATCGTTGGATTAAATACAAAACCAAGAAGTTTTACAGAACACA
GTTGCTTTCTGGAGAGCTGGAAGAATACACAGTGAGTTCAAATCGAAATTCATATGTGAAAAAAATAATTTCTGGTTTTACAAGGAAAATGTGTCCAACAAAGTGAACCCTTTTTATTTTTTTTGGTG
GAAAAACAAACCAAACTGTAGCTCTACAATTTTCATTGTGAAATCTCTCAAATAATGGTAAAATGTACTAACTATGTCCAAGGGGAGATAAACTCGCAGCATAATTATTTATATTAAAATTTATGATG
AAATGTAAAA

hide sequence

RefSeq Acc Id:

XM_011240195 ⟹ XP_011238497

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	120,949,049 - 120,965,427 (-)	NCBI
GRCm38	3	121,155,400 - 121,171,780 (-)	NCBI

Sequence:

show sequence

CGCAGCCGACCTGGCTGTGAGGCCGGGGCGCCCCCCAGTGACCGTAGGGGAGCTTTGCTCCGGG
AGGCGGCGGAAGTGGCTTTGGGTTCTGGTCGCACGGATATGGTGGAGGAGGTGCGGCAGGAGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGAGACA
GATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGAGGATGTGCCCTTAGAGTTGGCGTTCCATTTACCAGTTGGTTACCCTTTGTGTCTACCCGGCATCTCGGTTACCTCGGA
ACATCTGACCAGGGCCCAGTGTGTTACCGCGAAGGAGAAGTTACTTGGAGAAGCCAGGAAGCTCGTGTCAGAACCGATGGTTCACGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACTTGTCCTCA
GCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGATGGACCGTGGATGACTCTTTTGCGTTTAGATCACATGAGAGCGAGGACTAAATATGTCAAAGCC
GTGGAGAAGTGGGCTTCAGAGTTAAGGCTGACAGGAAGACTGATGTTCATGGGTAAATTAATACTGATTTTACTACAAGGAGACAGAAGCAACATCAAGGAGTACCTGATTCTTCAGAAAACCTCCAA
AGTAGATGTGGACTCAAGTGGAAAGAAATGCAAAGAGAAAATGATTAGTGTACTGTCTGAAACAAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACTGGAGG
AGTTACAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTCTTCTCAGAGTGTGTACTGGGGCTGGTGAAATGAGGTGAATGACAGGATCCGTTGGAAGAAAAGCGAGTCCTGTTTTATGGAATATTA
AACATGAAAAGATCCCATATATTCTAACGTTTGCCAGAAAAGACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAATTTGTTTA
GAACTCTGCAATTTTCAGGCTAATTTTCTCGTAATTAAATGATTTCTTAAAGTGATTTGTTTTCATGTTTACTTTCTCATGTTTATGTTTTTTGCCTTTAATCGTGCCTTCCTCCCCACTCTGCTTAT
TATGTTTTAAGTTGGATGTTGAGAAAAATCTAACACTCATTTCTTGGTGCGGTTGCATAAATCGTTGGATTAAATACAAAACCAAGAAGTTTTACAGAACACAGTTGCTTTCTGGAGAGCTGGAAGAA
TACACAGTGAGTTCAAATCGAAATTCATATGTGAAAAAAATAATTTCTGGTTTTACAAGGAAAATGTGTCCAACAAAGTGAACCCTTTTTATTTTTTTTGGTGGAAAAACAAACCAAACTGTAGCTCT
ACAATTTTCATTGTGAAATCTCTCAAATAATGGTAAAATGTACTAACTATGTCCAAGGGGAGATAAACTCGCAGCATAATTATTTATATTAAAATTTATGATGAAATGTAAAA

hide sequence

RefSeq Acc Id:

XR_004941379

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	120,949,046 - 120,965,426 (-)	NCBI

Sequence:

show sequence

GCAGCCGACCTGGCTGTGAGGCCGGGGCGCCCCCCAGTGACCGTAGGGGAGCTTTGCTCCGGGAGGCGGCGGAAGTGGCTTTGGGTTCTGGTCGCACGGATATGGTGGAGGAGGTGCGGCAGGAGCTC
TCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGAGACAGATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGAGGATGTGCCCTTAGA
GTTGGCGTTCCATTTACCAGTTGGTTACCCTTTGTGTCTACCCGGCATCTCGGTTACCTCGGAACATCTGACCAGGGCCCAGTGTGTTACCGCGAAGGAGAAGTTACTTGGAGAAGCCAGGAAGCTCG
TGTCAGAACCGATGGTTCACGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACTTGTCCTCAGCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGAT
GGACCGTGGATGACTCTTTTGCGTTTAGATCACATGAGAGCGAGGACTAAATATGTCAAAGCCGTGGAGAAGTGGGCTTCAGAGTTAAGGCTGACAGGAAGACTGATGTTCATGGGTAAATTAATACT
GATTTTACTACAAGGAGACAGAAGCAACATCAAGGTGCTGGAAAACTTCATTTTGAATATGAATCTACTTGCTTTCTCTTAAATATGGTGCATTTTTAAGTGTGTTTTATAACAGTGAGCTAGTCGAA
GCATGGTGTTTCTGATTTGCCTATCATCGTGTTAAATGGTACTTTGTTTTTTTTTTTTTTTCTCCTCTATTCTTTATATTTGTTTATCTTTTGTGTCTGGGTGTTTTGTCGGGATGTGTCTGTGCACC
TCGTGTAAACGTTTAGAAAAGCCTCTGATGCTCACAGAGCCTGGAGGAGGGGGTTGGATCTCCTGGGAGCTTCGAGCTATGAGCTGGGTATCAAACACAGCCTCCGGAAGAGCAACCAAGTTCTAACC
ACTGAGCCATCTCTCTAGGCACCCAACCATCTTTCCCCAGTTGTTTTTTTAAAATATACATATCTATCTATCTATCTATCTTGTCCCTAACAACAGCTATAAACTTGCAAGGTTCAGGATTAGCATAA
GATTATAATGTAAAAATTATGCCACTCAATGAAATGACAGTTTTTTTTTATTTCTTATTTTCTTAAAAATGTGTATGCGTGTTTTGCTTGCATGTATATATGTACAGTGCCCAAGGAAGCCAGAAGAG
GGTGTTGGCTCCCTAGGAACTGGATAGCTGCCTTTGGGTATTGGGAACCAAGAAGTGCTCTTAACCGCCGAGTTATCTCTCTAGCACCAGCCCCAGTTTTGGAAAAGTCCAAGGACATGTATTTGTTT
CCTATTAATGGTAAACTGCATCTGTATAAACAAGAACAAAAAACTTGTCCATATTAATTTTTTCCACAGCTCAGCACAGCAAGGAGTATGTTTGTGAGTAGTCTGCAAATTTCCTAACATGCAGGCGC
TTAGAAGCGCATCCTGACACTTCAGTGTTGTACCTGTAGTGCCTGAGAGGAAGGCTTGTCCTTTACAGCCAGGAGCCAGCCTCAGAGGAAGCAGGGTCGCCAGGACTGTCAGCTTGTCACCTCCTCCA
GACTTCTTCTTTCCACCTGACTTGTCCCAGCAGCTGCCTTCAAAGCCCTCATCTTCAGCTTCCCGAGCTCTCATCCTGAAGCCCCCTAGCCTGTTTTATGAGGAGCCAGACAAGGAAACCTGCTTATT
ATGCCTTACATTTTAACAGAGCTACAGATCACTTCATACGTTTTGCAGTGTCAGAGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCAAAGAGAAAATGA
TTAGTGTACTGTCTGAAACAAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTCTTC
TCAGAGTGTGTACTGGGGCTGGTGAAATGAGGAAGAAAAGCGAGTCCTGTTTTATGGAATATTAAACATGAAAAGATCCCATATATTCTAACGTTTGCCAGAAAAGACTAGGTTCAATAGACGGATTG
TCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAATTTGTTTAGAACTCTGCAATTTTCAGGCTAATTTTCTCGTAATTAAATGATTTCTTAAAGTGATTTGTTTTC
ATGTTTACTTTCTCATGTTTATGTTTTTTGCCTTTAATCGTGCCTTCCTCCCCACTCTGCTTATTATGTTTTAAGTTGGATGTTGAGAAAAATCTAACACTCATTTCTTGGTGCGGTTGCATAAATCG
TTGGATTAAATACAAAACCAAGAAGTTTTACAGAACACAGTTGCTTTCTGGAGAGCTGGAAGAATACACAGTGAGTTCAAATCGAAATTCATATGTGAAAAAAATAATTTCTGGTTTTACAAGGAAAA
TGTGTCCAACAAAGTGAACCCTTTTTATTTTTTTTGGTGGAAAAACAAACCAAACTGTAGCTCTACAATTTTCATTGTGAAATCTCTCAAATAATGGTAAAATGTACTAACTATGTCCAAGGGGAGAT
AAACTCGCAGCATAATTATTTATATTAAAATTTATGATGAAATGTAAAAGGA

hide sequence

RefSeq Acc Id:

XR_867227

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	120,949,836 - 120,965,426 (-)	NCBI
GRCm38	3	121,155,397 - 121,171,780 (-)	NCBI

Sequence:

show sequence

GCAGCCGACCTGGCTGTGAGGCCGGGGCGCCCCCCAGTGACCGTAGGGGAGCTTTGCTCCGGGA
GGCGGCGGAAGTGGCTTTGGGTTCTGGTCGCACGGATATGGTGGAGGAGGTGCGGCAGGAGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGAGACAG
ATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGAGGATGTGCCCTTAGAGTTGGCGTTCCATTTACCAGTTGGTTACCCTTTGTGTCTACCCGGCATCTCGGTTACCTCGGAA
CATCTGACCAGGGCCCAGTGTGTTACCGCGAAGGAGAAGTTACTTGGAGAAGCCAGGAAGCTCGTGTCAGAACCGATGGTTCACGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACTTGTCCTCAG
CCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGATGGACCGTGGATGACTCTTTTGCGTTTAGATCACATGAGAGCGAGGACTAAATATGTCAAAGCCG
TGGAGAAGTGGGCTTCAGAGTTAAGGCTGACAGGAAGACTGATGTTCATGGGTAAATTAATACTGATTTTACTACAAGGAGACAGAAGCAACATCAAGGTGCTGGAAAACTTCATTTTGAATATGAAT
CTACTTGCTTTCTCTTAAATATGGTGCATTTTTAAGTGTGTTTTATAACAGTGAGCTAGTCGAAGCATGGTGTTTCTGATTTGCCTATCATCGTGTTAAATGGAGTACCTGATTCTTCAGAAAACCTC
CAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCAAAGAGAAAATGATTAGTGTACTGTCTGAAACAAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACTGG
AGGAGTTACAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTCTTCTCAGAGTGTGTACTGGGGCTGGTGAAATGAG

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Protein RefSeqs	NP_079913	(Get FASTA)	NCBI Sequence Viewer
	NP_082732	(Get FASTA)	NCBI Sequence Viewer
	XP_011238497	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI28288	(Get FASTA)	NCBI Sequence Viewer
	AAI39341	(Get FASTA)	NCBI Sequence Viewer
	AAI39343	(Get FASTA)	NCBI Sequence Viewer
	AAI50839	(Get FASTA)	NCBI Sequence Viewer
	AAL35585	(Get FASTA)	NCBI Sequence Viewer
	AAL35586	(Get FASTA)	NCBI Sequence Viewer
	BAB27326	(Get FASTA)	NCBI Sequence Viewer
	BAB27327	(Get FASTA)	NCBI Sequence Viewer
	BAB29171	(Get FASTA)	NCBI Sequence Viewer
	BAE22084	(Get FASTA)	NCBI Sequence Viewer
	BAE30308	(Get FASTA)	NCBI Sequence Viewer
	BAE30425	(Get FASTA)	NCBI Sequence Viewer
	BAE32088	(Get FASTA)	NCBI Sequence Viewer
	EDL12346	(Get FASTA)	NCBI Sequence Viewer
	EDL12347	(Get FASTA)	NCBI Sequence Viewer
	EDL12348	(Get FASTA)	NCBI Sequence Viewer
	EDL12349	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000102074
	ENSMUSP00000102075
GenBank Protein	Q8VIL2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_082732 ⟸ NM_028456
- Peptide Label:	isoform 2
- UniProtKB:	A1A544 (UniProtKB/TrEMBL), Q3UYX7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVEEVRQELSALAAIFCGPNEWEMLSCSETDGAVFRIHTTAEGLVGEDVPLELAFHLPVGYPLCLPGISVTSEHLTRAQCVTAKEKLLGEARKLVSEPMVHELVLWIQQNLRLVLSQPETASSHEKCT LPESATGDDGPWMTLLRLDHMRARTKYVKAVEKWASELRLTGRLMFMGKLILILLQGDRSNIKEYLILQKTSKVDVDSSGKKCKEKMISVLSETKVQTEHKRFLAFEVKEYSTLEELQKEFGAAGLGE LFSECVLGLVK hide sequence

RefSeq Acc Id:	NP_079913 ⟸ NM_025637
- Peptide Label:	isoform 1
- UniProtKB:	E9Q1R6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVEEVRQELSALAAIFCGPNEWEMLSCSDGAQCPPRETQLLQIVGIHHKHLCITSLTTGRCSWL SATWKAVRKCLLRLLKNGSRFQTSAGRSMETFSSNPETDGAVFRIHTTAEGLVGEDVPLELAFHLPVGYPLCLPGISVTSEHLTRAQCVTAKEKLLGEARKLVSEPMVHELVLWIQQNLRLVLSQPET ASSHEKCTLPESATGDDGPWMTLLRLDHMRARTKYVKAVEKWASELRLTGRLMFMGKLILILLQGDRSNIKEYLILQKTSKVDVDSSGKKCKEKMISVLSETKVQTEHKRFLAFEVKEYSTLEELQKE FGAAGLGELFSECVLGLVK hide sequence

RefSeq Acc Id:	XP_011238497 ⟸ XM_011240195
- Peptide Label:	isoform X1
- UniProtKB:	A1A544 (UniProtKB/TrEMBL), Q3UYX7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVEEVRQELSALAAIFCGPNEWEMLSCSETDGAVFRIHTTAEGLVGEDVPLELAFHLPVGYPLC LPGISVTSEHLTRAQCVTAKEKLLGEARKLVSEPMVHELVLWIQQNLRLVLSQPETASSHEKCTLPESATGDDGPWMTLLRLDHMRARTKYVKAVEKWASELRLTGRLMFMGKLILILLQGDRSNIKE YLILQKTSKVDVDSSGKKCKEKMISVLSETKVQTEHKRFLAFEVKEYSTLEELQKEFGAAGLGELFSECVLGLVK hide sequence

Ensembl Acc Id:

ENSMUSP00000133036 ⟸ ENSMUST00000164925

Ensembl Acc Id:

ENSMUSP00000130734 ⟸ ENSMUST00000164573

Protein Domains

RWD

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8VIL2-F1-model_v2	AlphaFold	Q8VIL2	1-267	view protein structure

RGD ID:

6834412

Promoter ID:

MM_KWN:35935

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day2, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Kidney, Liver, Lung, MEF_B6, Spleen

Transcripts:

ENSMUST00000106465, NM_025637, NM_028456, UC008RDO.1, UC008RDP.1, UC008RDR.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	3	120,874,214 - 120,874,714 (-)	MPROMDB

RGD ID:

6882216

Promoter ID:

EPDNEW_M4559

Type:

single initiation site

Name:

Rwdd3_1

Description:

Mus musculus RWD domain containing 3 , transcript variant 2,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	3	121,171,695 - 121,171,755	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000028133	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000106466	ENTREZGENE
	ENSMUST00000106467	ENTREZGENE
Gene3D-CATH	3.10.110.10	UniProtKB/Swiss-Prot
InterPro	RWD-domain	UniProtKB/Swiss-Prot
	RWDD3	UniProtKB/Swiss-Prot
	UBQ-conjugating_enzyme/RWD	UniProtKB/Swiss-Prot
MGD	MGI:1920420	ENTREZGENE
NCBI Gene	Rwdd3	ENTREZGENE
PANTHER	PTHR15628	UniProtKB/Swiss-Prot
	RWD DOMAIN-CONTAINING PROTEIN 3	UniProtKB/Swiss-Prot
Pfam	RWD	UniProtKB/Swiss-Prot
PhenoGen	Rwdd3	PhenoGen
PROSITE	RWD	UniProtKB/Swiss-Prot
SMART	RWD	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54495	UniProtKB/Swiss-Prot
UniProt	A1A544	ENTREZGENE, UniProtKB/TrEMBL
	B9EKD5_MOUSE	UniProtKB/TrEMBL
	E9PVR5_MOUSE	UniProtKB/TrEMBL
	E9PZT2_MOUSE	UniProtKB/TrEMBL
	E9Q1R6	ENTREZGENE, UniProtKB/TrEMBL
	F7AYC4_MOUSE	UniProtKB/TrEMBL
	Q3UA90_MOUSE	UniProtKB/TrEMBL
	Q3UYX7	ENTREZGENE, UniProtKB/TrEMBL
	Q8VIL1_MOUSE	UniProtKB/TrEMBL
	Q8VIL2	ENTREZGENE
	Q9CQN2_MOUSE	UniProtKB/TrEMBL
	RWDD3_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q9CXQ2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-05-15	Rwdd3	RWD domain containing 3	Rwdd3	RWD domain containing 3	Data merged from RGD:1553552	737654	PROVISIONAL
2014-09-17	Rwdd3	RWD domain containing 3	2510027J23Rik	RIKEN cDNA 2510027J23 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Mammalian Phenotype