Atn1 (atrophin 1) - Rat Genome Database

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Gene: Atn1 (atrophin 1) Mus musculus
Analyze
Symbol: Atn1 (Ensembl: Gm45234)
Name: atrophin 1 (Ensembl:predicted gene 45234)
RGD ID: 1620917
MGI Page MGI
Description: Enables transcription coactivator activity and transcription corepressor activity. Involved in cell migration and maintenance of cell polarity. Acts upstream of or within several processes, including determination of adult lifespan; male gonad development; and negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system; and integumental system. Human ortholog(s) of this gene implicated in dentatorubral-pallidoluysian atrophy and schizophrenia. Orthologous to human ATN1 (atrophin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: At; Atr1; atro; atrophin-1; D; dentatorubral pallidoluysian atrophy; dentatorubral-pallidoluysian atrophy protein homolog; Drpla
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,719,507 - 124,733,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,719,507 - 124,733,487 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl6124,716,152 - 124,732,984 (-)EnsemblGRCm39 Ensembl
GRCm386124,742,544 - 124,756,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,742,544 - 124,756,524 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,739,189 - 124,756,021 (-)EnsemblGRCm38mm10GRCm38
MGSCv376124,692,562 - 124,706,505 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,708,163 - 124,722,106 (-)NCBIMGSCv36mm8
Celera6126,424,276 - 126,438,219 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Analysis of the CAG repeats in the SCA1 and B37 genes in schizophrenic and bipolar I disorder patients: tentative association between B37 and schizophrenia. Morris-Rosendahl DJ, etal., Am J Med Genet 1997 May 31;74(3):324-30.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7485154   PMID:9070948   PMID:9445485   PMID:9887337   PMID:10349636   PMID:10677044   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11442350   PMID:12464607  
PMID:12466851   PMID:12477932   PMID:14610273   PMID:14645126   PMID:16141072   PMID:16141073   PMID:16407196   PMID:16602821   PMID:16702404   PMID:17150957   PMID:17967808   PMID:18799693  
PMID:19131340   PMID:19681162   PMID:21677750   PMID:21873635   PMID:22510986   PMID:24194600   PMID:27626380   PMID:28794184   PMID:29581187   PMID:30550785  


Genomics

Comparative Map Data
Atn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,719,507 - 124,733,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,719,507 - 124,733,487 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl6124,716,152 - 124,732,984 (-)EnsemblGRCm39 Ensembl
GRCm386124,742,544 - 124,756,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,742,544 - 124,756,524 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,739,189 - 124,756,021 (-)EnsemblGRCm38mm10GRCm38
MGSCv376124,692,562 - 124,706,505 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,708,163 - 124,722,106 (-)NCBIMGSCv36mm8
Celera6126,424,276 - 126,438,219 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
ATN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,924,459 - 6,942,321 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,924,463 - 6,942,321 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,033,622 - 7,051,484 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,903,887 - 6,921,745 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,907,740 - 6,921,743NCBI
Celera128,652,242 - 8,670,105 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,889,640 - 6,907,586 (+)NCBIHuRef
CHM1_1127,032,499 - 7,050,471 (+)NCBICHM1_1
T2T-CHM13v2.0126,935,640 - 6,953,487 (+)NCBIT2T-CHM13v2.0
Atn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,240,573 - 159,254,378 (-)NCBIGRCr8
mRatBN7.24157,554,287 - 157,568,092 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,551,276 - 157,568,132 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,776,523 - 163,790,330 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,559,429 - 159,573,234 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,201,011 - 158,214,821 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,267,394 - 157,281,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,267,901 - 157,274,755 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,264,418 - 20,278,261 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,284,990 - 224,298,835 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,872,360 - 160,886,205 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,117,300 - 161,131,141 (-)NCBI
Celera4146,292,553 - 146,300,062 (-)NCBICelera
Cytogenetic Map4q42NCBI
Atn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,516,532 - 4,522,831 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,511,251 - 4,524,037 (+)NCBIChiLan1.0ChiLan1.0
ATN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,491,675 - 12,506,034 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,488,434 - 12,502,793 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,057,430 - 7,071,767 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,978,414 - 6,986,944 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,978,576 - 6,990,580 (+)Ensemblpanpan1.1panPan2
ATN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,104,683 - 38,118,957 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,104,842 - 38,111,462 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,497,826 - 8,512,450 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,457,244 - 38,471,505 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,456,843 - 38,464,161 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,331,302 - 38,345,906 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,372,276 - 38,386,882 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,976,546 - 7,990,812 (+)NCBIUU_Cfam_GSD_1.0
Atn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,219,906 - 102,227,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936709887,455 - 894,727 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936709886,571 - 894,746 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,782,162 - 63,795,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,782,159 - 63,795,648 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,218,992 - 66,232,264 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,959,568 - 6,973,341 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,964,784 - 6,972,801 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,244,409 - 1,258,202 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,571,254 - 3,577,400 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,564,741 - 3,577,889 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atn1
367 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:950
Count of miRNA genes:486
Interacting mature miRNAs:568
Transcripts:ENSMUST00000088357, ENSMUST00000129411, ENSMUST00000133577, ENSMUST00000146872
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116641858128495988Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse

Markers in Region
BB431127  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386124,760,384 - 124,760,515UniSTSGRCm38
MGSCv376124,710,402 - 124,710,533UniSTSGRCm37
Celera6126,442,116 - 126,442,247UniSTS
Cytogenetic Map6F2UniSTS
cM Map660.21UniSTS
cM Map660.21UniSTS
Whitehead/MRC_RH61264.68UniSTS
AI837106  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386124,760,587 - 124,760,681UniSTSGRCm38
MGSCv376124,710,605 - 124,710,699UniSTSGRCm37
Celera6126,442,319 - 126,442,413UniSTS
Cytogenetic Map6F2UniSTS
cM Map660.21UniSTS
cM Map660.21UniSTS
Whitehead/MRC_RH61265.29UniSTS
EC218RR  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386124,759,363 - 124,759,482UniSTSGRCm38
MGSCv376124,709,381 - 124,709,500UniSTSGRCm37
Celera6126,441,095 - 126,441,214UniSTS
Cytogenetic Map6F2UniSTS
cM Map660.0UniSTS
EC351RR  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386124,759,262 - 124,759,371UniSTSGRCm38
MGSCv376124,709,280 - 124,709,389UniSTSGRCm37
Celera6126,440,994 - 126,441,103UniSTS
Cytogenetic Map6F2UniSTS
cM Map660.0UniSTS
Eno2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386124,760,397 - 124,760,630UniSTSGRCm38
MGSCv376124,710,415 - 124,710,648UniSTSGRCm37
Celera6126,442,129 - 126,442,362UniSTS
Cytogenetic Map6F2UniSTS
cM Map660.21UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000088357   ⟹   ENSMUSP00000085695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,719,507 - 124,733,487 (-)Ensembl
GRCm38.p6 Ensembl6124,742,544 - 124,756,524 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129411   ⟹   ENSMUSP00000115407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,716,152 - 124,732,984 (-)Ensembl
GRCm38.p6 Ensembl6124,739,189 - 124,756,021 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,722,135 - 124,722,588 (-)Ensembl
GRCm38.p6 Ensembl6124,745,172 - 124,745,625 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146872   ⟹   ENSMUSP00000123560
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,724,682 - 124,733,017 (-)Ensembl
GRCm38.p6 Ensembl6124,747,719 - 124,756,054 (-)Ensembl
RefSeq Acc Id: NM_007881   ⟹   NP_031907
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396124,719,507 - 124,733,450 (-)NCBI
GRCm386124,742,544 - 124,756,487 (-)ENTREZGENE
MGSCv376124,692,562 - 124,706,505 (-)RGD
Celera6126,424,276 - 126,438,219 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031907   ⟸   NM_007881
- UniProtKB: P70200 (UniProtKB/Swiss-Prot),   Q80YQ0 (UniProtKB/Swiss-Prot),   O35126 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000085695   ⟸   ENSMUST00000088357
RefSeq Acc Id: ENSMUSP00000123560   ⟸   ENSMUST00000146872
RefSeq Acc Id: ENSMUSP00000115407   ⟸   ENSMUST00000129411

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35126-F1-model_v2 AlphaFold O35126 1-1175 view protein structure

Promoters
RGD ID:6838959
Promoter ID:MM_KWN:47561
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000055874
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366124,695,571 - 124,696,582 (-)MPROMDB
RGD ID:6848835
Promoter ID:MM_TRO:8523
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Liver,   Spleen
Transcripts:MTR000169.6.2341.2
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366124,696,786 - 124,697,997 (-)MPROMDB
RGD ID:6838962
Promoter ID:MM_KWN:47562
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000055871,   OTTMUST00000055872,   UC009DRO.1,   UC009DRQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366124,706,026 - 124,707,302 (-)MPROMDB
RGD ID:6890984
Promoter ID:EPDNEW_M8943
Type:multiple initiation site
Name:Atn1_2
Description:Mus musculus atrophin 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8944  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386124,746,870 - 124,746,930EPDNEW
RGD ID:6890986
Promoter ID:EPDNEW_M8944
Type:multiple initiation site
Name:Atn1_1
Description:Mus musculus atrophin 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8943  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386124,756,492 - 124,756,552EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104725 AgrOrtholog
Ensembl Genes ENSMUSG00000004263 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUSG00000107478 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000088357 ENTREZGENE
  ENSMUST00000088357.12 UniProtKB/Swiss-Prot
  ENSMUST00000129411.7 UniProtKB/Swiss-Prot
  ENSMUST00000146872.3 UniProtKB/TrEMBL
InterPro Atrophin-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Atrophin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13498 UniProtKB/Swiss-Prot
MGD MGI:104725 ENTREZGENE
NCBI Gene 13498 ENTREZGENE
PANTHER ATROPHIN-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATROPHIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Atrophin-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atn1 PhenoGen
PRINTS ATROPHIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ATN1_MOUSE UniProtKB/Swiss-Prot
  D3YYE6_MOUSE UniProtKB/TrEMBL
  O35126 ENTREZGENE
  P70200 ENTREZGENE
  Q80YQ0 ENTREZGENE
UniProt Secondary P70200 UniProtKB/Swiss-Prot
  Q80YQ0 UniProtKB/Swiss-Prot