Atn1 (atrophin 1) - Rat Genome Database

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Gene: Atn1 (atrophin 1) Heterocephalus glaber
Analyze
Symbol: Atn1
Name: atrophin 1
RGD ID: 18927422
Description: ENCODES a protein that exhibits JUN kinase binding (ortholog); protein domain specific binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cell killing (ortholog); cell migration (ortholog); determination of adult lifespan (ortholog); ASSOCIATED WITH Congenital Hypotonia, Epilepsy, Developmental Delay, and Digital Anomalies (ortholog); dentatorubral-pallidoluysian atrophy (ortholog); developmental and epileptic encephalopathy 21 (ortholog); FOUND IN cell leading edge (ortholog); cytoplasm (ortholog); nuclear matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: atrophin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,571,254 - 3,577,400 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,564,741 - 3,577,889 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Atn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,571,254 - 3,577,400 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,564,741 - 3,577,889 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,924,459 - 6,942,321 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,924,463 - 6,942,321 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,033,622 - 7,051,484 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,903,887 - 6,921,745 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,907,740 - 6,921,743NCBI
Celera128,652,242 - 8,670,105 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,889,640 - 6,907,586 (+)NCBIHuRef
CHM1_1127,032,499 - 7,050,471 (+)NCBICHM1_1
T2T-CHM13v2.0126,935,640 - 6,953,487 (+)NCBIT2T-CHM13v2.0
Atn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,719,507 - 124,733,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,719,507 - 124,733,487 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl6124,716,152 - 124,732,984 (-)EnsemblGRCm39 Ensembl
GRCm386124,742,544 - 124,756,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,742,544 - 124,756,524 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,739,189 - 124,756,021 (-)EnsemblGRCm38mm10GRCm38
MGSCv376124,692,562 - 124,706,505 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,708,163 - 124,722,106 (-)NCBIMGSCv36mm8
Celera6126,424,276 - 126,438,219 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Atn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,240,573 - 159,254,378 (-)NCBIGRCr8
mRatBN7.24157,554,287 - 157,568,092 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,551,276 - 157,568,132 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,776,523 - 163,790,330 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,559,429 - 159,573,234 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,201,011 - 158,214,821 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,267,394 - 157,281,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,267,901 - 157,274,755 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,264,418 - 20,278,261 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,284,990 - 224,298,835 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,872,360 - 160,886,205 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,117,300 - 161,131,141 (-)NCBI
Celera4146,292,553 - 146,300,062 (-)NCBICelera
Cytogenetic Map4q42NCBI
Atn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,516,532 - 4,522,831 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,511,251 - 4,524,037 (+)NCBIChiLan1.0ChiLan1.0
ATN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,491,675 - 12,506,034 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,488,434 - 12,502,793 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,057,430 - 7,071,767 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,978,414 - 6,986,944 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,978,576 - 6,990,580 (+)Ensemblpanpan1.1panPan2
ATN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,104,683 - 38,118,957 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,104,842 - 38,111,462 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,497,826 - 8,512,450 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,457,244 - 38,471,505 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,456,843 - 38,464,161 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,331,302 - 38,345,906 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,372,276 - 38,386,882 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,976,546 - 7,990,812 (+)NCBIUU_Cfam_GSD_1.0
Atn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,219,906 - 102,227,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936709887,455 - 894,727 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936709886,571 - 894,746 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,782,162 - 63,795,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,782,159 - 63,795,648 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,218,992 - 66,232,264 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,959,568 - 6,973,341 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,964,784 - 6,972,801 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,244,409 - 1,258,202 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000001274   ⟹   ENSHGLP00000001232
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248603,571,254 - 3,577,400 (+)Ensembl
RefSeq Acc Id: XM_004869466   ⟹   XP_004869523
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,564,742 - 3,577,889 (+)NCBI
RefSeq Acc Id: XM_021248014   ⟹   XP_021103673
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,568,329 - 3,577,889 (+)NCBI
RefSeq Acc Id: XM_021248015   ⟹   XP_021103674
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,564,743 - 3,577,889 (+)NCBI
RefSeq Acc Id: XM_021248016   ⟹   XP_021103675
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,564,741 - 3,577,889 (+)NCBI
RefSeq Acc Id: XM_021248017   ⟹   XP_021103676
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,564,741 - 3,577,889 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869523 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103673 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103674 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103675 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103676 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001232
Reference Protein Sequences
RefSeq Acc Id: XP_021103675   ⟸   XM_021248016
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021103676   ⟸   XM_021248017
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004869523   ⟸   XM_004869466
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021103674   ⟸   XM_021248015
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021103673   ⟸   XM_021248014
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000001232   ⟸   ENSHGLT00000001274


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000959 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000001274 ENTREZGENE
NCBI Gene Atn1 ENTREZGENE