Rpusd3 (RNA pseudouridylate synthase domain containing 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rpusd3 (RNA pseudouridylate synthase domain containing 3) Mus musculus
Analyze
Symbol: Rpusd3
Name: RNA pseudouridylate synthase domain containing 3
RGD ID: 1615775
MGI Page MGI
Description: Predicted to enable RNA binding activity and pseudouridine synthase activity. Predicted to be involved in positive regulation of mitochondrial translation. Predicted to act upstream of or within mRNA processing. Predicted to be located in mitochondrion and ribonucleoprotein granule. Orthologous to human RPUSD3 (RNA pseudouridine synthase D3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI527266; mitochondrial mRNA pseudouridine synthase Rpusd3; RNA pseudouridylate synthase domain-containing protein 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,392,280 - 113,396,309 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6113,392,280 - 113,396,301 (-)EnsemblGRCm39 Ensembl
GRCm386113,415,319 - 113,419,348 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,415,319 - 113,419,340 (-)EnsemblGRCm38mm10GRCm38
MGSCv376113,365,313 - 113,369,334 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366113,381,096 - 113,385,359 (-)NCBIMGSCv36mm8
Celera6115,242,232 - 115,246,253 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:30550785  


Genomics

Comparative Map Data
Rpusd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,392,280 - 113,396,309 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6113,392,280 - 113,396,301 (-)EnsemblGRCm39 Ensembl
GRCm386113,415,319 - 113,419,348 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,415,319 - 113,419,340 (-)EnsemblGRCm38mm10GRCm38
MGSCv376113,365,313 - 113,369,334 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366113,381,096 - 113,385,359 (-)NCBIMGSCv36mm8
Celera6115,242,232 - 115,246,253 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.76NCBI
RPUSD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3839,837,849 - 9,844,008 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl39,837,849 - 9,844,602 (-)EnsemblGRCh38hg38GRCh38
GRCh3739,879,533 - 9,885,692 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3639,854,533 - 9,860,676 (-)NCBINCBI36Build 36hg18NCBI36
Build 3439,854,533 - 9,860,676NCBI
Celera39,814,834 - 9,821,003 (-)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef39,815,821 - 9,821,990 (-)NCBIHuRef
CHM1_139,829,733 - 9,835,902 (-)NCBICHM1_1
T2T-CHM13v2.039,829,856 - 9,836,015 (-)NCBIT2T-CHM13v2.0
Rpusd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84148,108,857 - 148,118,246 (-)NCBIGRCr8
mRatBN7.24146,553,743 - 146,562,789 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4146,558,562 - 146,562,794 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4151,937,715 - 151,946,543 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04147,718,560 - 147,727,388 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04146,340,179 - 146,349,007 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04145,361,937 - 145,370,992 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4145,366,765 - 145,370,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04208,658,981 - 208,668,038 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44149,297,259 - 149,301,491 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14149,542,099 - 149,546,093 (-)NCBI
Celera4135,114,960 - 135,119,192 (-)NCBICelera
Cytogenetic Map4q42NCBI
Rpusd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555611,358,197 - 1,361,619 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555611,358,003 - 1,361,634 (-)NCBIChiLan1.0ChiLan1.0
RPUSD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v229,848,436 - 9,854,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan139,853,195 - 9,859,462 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v039,788,950 - 9,795,189 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1310,025,320 - 10,031,650 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl310,025,320 - 10,031,639 (-)Ensemblpanpan1.1panPan2
RPUSD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1208,406,549 - 8,414,029 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl208,406,571 - 8,413,004 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha208,439,750 - 8,447,246 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0208,435,847 - 8,443,342 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl208,435,886 - 8,443,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1208,158,326 - 8,165,808 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0208,503,012 - 8,510,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0208,476,434 - 8,483,929 (+)NCBIUU_Cfam_GSD_1.0
Rpusd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494215,574,806 - 15,579,551 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366023,330,142 - 3,335,697 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366023,330,160 - 3,355,805 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPUSD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1366,126,124 - 66,133,747 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11366,126,126 - 66,133,774 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21373,202,080 - 73,209,706 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPUSD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12245,848,749 - 45,857,122 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2245,848,788 - 45,857,117 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041120,707,585 - 120,714,495 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpusd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247314,463,980 - 4,467,491 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247314,463,848 - 4,467,541 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpusd3
104 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1641
Count of miRNA genes:664
Interacting mature miRNAs:815
Transcripts:ENSMUST00000060634, ENSMUST00000113092, ENSMUST00000124078, ENSMUST00000129047, ENSMUST00000129560, ENSMUST00000134853, ENSMUST00000147726, ENSMUST00000150452, ENSMUST00000151618
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686783787113521563Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
1357793Pnhdlc1_mplasma non-HDL cholesterol 1 (mouse)Not determined6105541783114345810Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined105982366120894102Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse

Markers in Region
AI527266  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386113,415,479 - 113,415,576UniSTSGRCm38
MGSCv376113,365,473 - 113,365,570UniSTSGRCm37
Celera6115,242,392 - 115,242,489UniSTS
Cytogenetic Map6E3UniSTS
Whitehead/MRC_RH61173.03UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000060634   ⟹   ENSMUSP00000059057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,392,290 - 113,396,280 (-)Ensembl
GRCm38.p6 Ensembl6113,415,329 - 113,419,319 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113092   ⟹   ENSMUSP00000108715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,392,280 - 113,396,301 (-)Ensembl
GRCm38.p6 Ensembl6113,415,319 - 113,419,340 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124078
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,393,750 - 113,396,280 (-)Ensembl
GRCm38.p6 Ensembl6113,416,789 - 113,419,319 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129047   ⟹   ENSMUSP00000120380
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,393,067 - 113,396,280 (-)Ensembl
GRCm38.p6 Ensembl6113,416,106 - 113,419,319 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129560   ⟹   ENSMUSP00000114511
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,394,184 - 113,396,292 (-)Ensembl
GRCm38.p6 Ensembl6113,417,223 - 113,419,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134853
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,394,157 - 113,396,009 (-)Ensembl
GRCm38.p6 Ensembl6113,417,196 - 113,419,048 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147726   ⟹   ENSMUSP00000120250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,393,271 - 113,396,271 (-)Ensembl
GRCm38.p6 Ensembl6113,416,310 - 113,419,310 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,395,265 - 113,396,284 (-)Ensembl
GRCm38.p6 Ensembl6113,418,304 - 113,419,323 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151618   ⟹   ENSMUSP00000115950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,393,855 - 113,396,275 (-)Ensembl
GRCm38.p6 Ensembl6113,416,894 - 113,419,314 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,392,509 - 113,393,413 (-)Ensembl
GRCm38.p6 Ensembl6113,415,548 - 113,416,452 (-)Ensembl
RefSeq Acc Id: NM_001033204   ⟹   NP_001028376
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396113,392,280 - 113,396,301 (-)NCBI
GRCm386113,415,319 - 113,419,340 (-)NCBI
MGSCv376113,365,313 - 113,369,334 (-)RGD
Celera6115,242,232 - 115,246,253 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001346511   ⟹   NP_001333440
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396113,392,280 - 113,396,309 (-)NCBI
GRCm386113,415,319 - 113,419,348 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001028376   ⟸   NM_001033204
- Peptide Label: isoform 1
- UniProtKB: Q8BVS3 (UniProtKB/Swiss-Prot),   Q3UZF6 (UniProtKB/Swiss-Prot),   Q8CHZ5 (UniProtKB/Swiss-Prot),   Q14AI6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001333440   ⟸   NM_001346511
- Peptide Label: isoform 2
- UniProtKB: B7ZMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000120250   ⟸   ENSMUST00000147726
RefSeq Acc Id: ENSMUSP00000108715   ⟸   ENSMUST00000113092
RefSeq Acc Id: ENSMUSP00000115950   ⟸   ENSMUST00000151618
RefSeq Acc Id: ENSMUSP00000120380   ⟸   ENSMUST00000129047
RefSeq Acc Id: ENSMUSP00000114511   ⟸   ENSMUST00000129560
RefSeq Acc Id: ENSMUSP00000059057   ⟸   ENSMUST00000060634
Protein Domains
Pseudouridine synthase RsuA/RluA-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q14AI6-F1-model_v2 AlphaFold Q14AI6 1-344 view protein structure

Promoters
RGD ID:6839948
Promoter ID:MM_KWN:47180
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000059185,   OTTMUST00000059188,   OTTMUST00000059189,   OTTMUST00000059190,   OTTMUST00000059191,   OTTMUST00000059192,   OTTMUST00000059193,   UC009DFZ.1,   UC009DGA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366113,368,926 - 113,369,507 (-)MPROMDB
RGD ID:6890648
Promoter ID:EPDNEW_M8775
Type:multiple initiation site
Name:Rpusd3_1
Description:Mus musculus RNA pseudouridylate synthase domain containing 3, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386113,419,335 - 113,419,395EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2141440 AgrOrtholog
Ensembl Genes ENSMUSG00000051169 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000060634 ENTREZGENE
  ENSMUST00000060634.14 UniProtKB/TrEMBL
  ENSMUST00000113092 ENTREZGENE
  ENSMUST00000113092.9 UniProtKB/Swiss-Prot
  ENSMUST00000129047.8 UniProtKB/Swiss-Prot
  ENSMUST00000129560.2 UniProtKB/TrEMBL
  ENSMUST00000147726.8 UniProtKB/TrEMBL
  ENSMUST00000151618.8 UniProtKB/TrEMBL
Gene3D-CATH Pseudouridine synthase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PsdUridine_synth_cat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PsdUridine_synth_RsuA/RluA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:101122 UniProtKB/Swiss-Prot
MGD MGI:2141440 ENTREZGENE
NCBI Gene 101122 ENTREZGENE
PANTHER MITOCHONDRIAL MRNA PSEUDOURIDINE SYNTHASE RPUSD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PseudoU_synth_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpusd3 PhenoGen
Superfamily-SCOP SSF55120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7ZMQ0 ENTREZGENE, UniProtKB/TrEMBL
  D3YVC8_MOUSE UniProtKB/TrEMBL
  F6UDW0_MOUSE UniProtKB/TrEMBL
  F6WLR1_MOUSE UniProtKB/TrEMBL
  Q14AI6 ENTREZGENE
  Q3UZF6 ENTREZGENE
  Q8BVS3 ENTREZGENE
  Q8CHZ5 ENTREZGENE
  RUSD3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UZF6 UniProtKB/Swiss-Prot
  Q8BVS3 UniProtKB/Swiss-Prot
  Q8CHZ5 UniProtKB/Swiss-Prot