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Gene: Rpusd3 (RNA pseudouridine synthase D3) Chinchilla lanigera

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Symbol:

Rpusd3

Name:

RNA pseudouridine synthase D3

RGD ID:

9054254

Description:

INVOLVED IN mRNA pseudouridine synthesis (ortholog); positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); genetic disease (ortholog); long QT syndrome (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); ribonucleoprotein granule (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RNA pseudouridylate synthase domain containing 3; RNA pseudouridylate synthase domain-containing protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955561	1,358,197 - 1,361,619 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955561	1,358,003 - 1,361,634 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpusd3	Chinchilla	Atrioventricular Septal Defect 2		ISO	RPUSD3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Atrioventricular septal defect more ...	ClinVar	PMID:28492532
Rpusd3	Chinchilla	genetic disease		ISO	RPUSD3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25356970
Rpusd3	Chinchilla	long QT syndrome		ISO	RPUSD3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Long QT syndrome	ClinVar	PMID:28492532
Rpusd3	Chinchilla	myoclonic-atonic epilepsy		ISO	RPUSD3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Generalized myoclonic-atonic seizure	ClinVar	PMID:25865495 more ...
Rpusd3	Chinchilla	Neurodevelopmental Disorders		ISO	RPUSD3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpusd3	Chinchilla	mRNA pseudouridine synthesis	involved_in	ISO	RPUSD3 (Homo sapiens)	9068941	PMID:27974379	FlyBase	PMID:27974379
Rpusd3	Chinchilla	positive regulation of mitochondrial translation	involved_in	ISO	RPUSD3 (Homo sapiens)	9068941	PMID:27667664	UniProt	PMID:27667664

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpusd3	Chinchilla	mitochondrial matrix	located_in	ISO	RPUSD3 (Homo sapiens)	9068941	PMID:27974379	FlyBase	PMID:27974379
Rpusd3	Chinchilla	mitochondrion	located_in	ISO	RPUSD3 (Homo sapiens)	9068941	PMID:28082677	FlyBase	PMID:28082677
Rpusd3	Chinchilla	mitochondrion	located_in	ISO	RPUSD3 (Homo sapiens)	9068941	PMID:34800366	FlyBase	PMID:34800366
Rpusd3	Chinchilla	ribonucleoprotein granule	located_in	ISO	RPUSD3 (Homo sapiens)	9068941	PMID:28082677	FlyBase	PMID:28082677

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpusd3	Chinchilla	protein binding	enables	ISO	UniProtKB:P60409 and UniProtKB:Q15323	9068941	PMID:25416956	IntAct	PMID:25416956
Rpusd3	Chinchilla	protein binding	enables	ISO	UniProtKB:A8MQ03 and UniProtKB:Q07627	9068941	PMID:32296183	IntAct	PMID:32296183

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:22301074

Rpusd3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955561	1,358,197 - 1,361,619 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955561	1,358,003 - 1,361,634 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPUSD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	9,837,849 - 9,844,008 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	9,837,849 - 9,844,602 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	9,879,533 - 9,885,692 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	9,854,533 - 9,860,676 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	9,854,533 - 9,860,676	NCBI
Celera	3	9,814,834 - 9,821,003 (-)	NCBI		Celera
Cytogenetic Map	3	p25.3	NCBI
HuRef	3	9,815,821 - 9,821,990 (-)	NCBI		HuRef
CHM1_1	3	9,829,733 - 9,835,902 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	9,829,856 - 9,836,015 (-)	NCBI		T2T-CHM13v2.0

Rpusd3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	113,392,280 - 113,396,309 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	113,392,280 - 113,396,301 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	113,415,319 - 113,419,348 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	113,415,319 - 113,419,340 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	113,365,313 - 113,369,334 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	113,381,096 - 113,385,359 (-)	NCBI		MGSCv36	mm8
Celera	6	115,242,232 - 115,246,253 (-)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	52.76	NCBI

Rpusd3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	148,108,857 - 148,118,246 (-)	NCBI		GRCr8
mRatBN7.2	4	146,553,743 - 146,562,789 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,558,562 - 146,562,794 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	151,937,715 - 151,946,543 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	147,718,560 - 147,727,388 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	146,340,179 - 146,349,007 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	145,361,937 - 145,370,992 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	145,366,765 - 145,370,992 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	208,658,981 - 208,668,038 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	149,297,259 - 149,301,491 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	149,542,099 - 149,546,093 (-)	NCBI
Celera	4	135,114,960 - 135,119,192 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

RPUSD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	9,848,436 - 9,854,703 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	9,853,195 - 9,859,462 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	9,788,950 - 9,795,189 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	10,025,320 - 10,031,650 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	10,025,320 - 10,031,639 (-)	Ensembl	panpan1.1		panPan2

RPUSD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	8,406,549 - 8,414,029 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	8,406,571 - 8,413,004 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	8,439,750 - 8,447,246 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	8,435,847 - 8,443,342 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	8,435,886 - 8,443,340 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	8,158,326 - 8,165,808 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	8,503,012 - 8,510,489 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	8,476,434 - 8,483,929 (+)	NCBI		UU_Cfam_GSD_1.0

Rpusd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	15,574,806 - 15,579,551 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936602	3,330,142 - 3,335,697 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936602	3,330,160 - 3,355,805 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPUSD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	66,126,124 - 66,133,747 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	66,126,126 - 66,133,774 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	73,202,080 - 73,209,706 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPUSD3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	45,848,749 - 45,857,122 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	45,848,788 - 45,857,117 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	120,707,585 - 120,714,495 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpusd3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	4,463,980 - 4,467,491 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	4,463,848 - 4,467,541 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005413036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005413037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005413038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01073851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01080735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000004641 ⟹ ENSCLAP00000004556

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955561	1,358,197 - 1,361,619 (-)	Ensembl

RefSeq Acc Id:

XM_005413036 ⟹ XP_005413093

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955561	1,358,003 - 1,361,634 (-)	NCBI

Sequence:

show sequence

GCGCAGCAAGAGAGCATGGGGGCGGGGCTAGATGCGCACGCGCACAGCGCCTCCCGGGAAATGGGCGCGCTCGTGGCGTGGGGTCGGGGCGTGGGTGGCTGGCGGCTGGCGCTGGGAGCCCGCTTGCC
GCCCTGGGACGCAGGCTTCTGCACTGAGCCCGGGCTTCAGTCGTGGCGCGGCGGCGACCGCGAGGCGCTGCTGCTCGAGCTGCGGGCCGCCGTGGTGGAGCACAGAGGACCTCTGGTGACGCTGAACA
AGCCGCAGGGTCTGCCGGTGACAGGAAAACCTGGAGAGCTGACGTTGCTCTCCGTGTTGCCAGACCTGAGCCAGTCCCTGGGTTGTCCGAGCCTCCAGGTGATCCGAGCGCCGGGGAAGGAGACTTCT
GGGCTTGTGCTCCTTTCCACTTGTCCCCAGACAGCGAGCCGTCTCCAGAAGTTCTTCATCCGCTCGAGGAGAGCCCACAGGCCCACAGCCACATACTGGGCGGTTACCAATGGGATCCCGGATGCTTC
TGAGGGGCAGATCCTCGCAGCGCTGACACTGCAGCACATTGGTGGTGTCAGTGTCGTGATTCCGGTGAAGTGCCCATCTCGAAGGGACCTCTTGGAGGGTGTCAAGAGGACCCTCAGCCACTTCCGTG
TAATGGCCACAGGCTCTGGCTGTGCCCTGATCCAGCTGCAGCCCCTCACATTGTTCCCCAGTCAGCTGCAGGTACACATGATGCTGCAGCTCTGCCCTGTGCTTGGGGACCACACCTATTCTGCTCGA
GCGGGCACTGTCCTGGGCCAGCGCTTTCTGTTGTCTGCTGAGAACACTAAGCCTCAAAGACAGGCCCTGGATGATGCCCTCCTCAGACGCCTCCACCTGACCCCTGCCCAGGCCGCACAGCTGCCCTT
GCACCTGCACCTGCACCAGCTGCTCCTCCCCGGCAGCAGGCCTGCCGATGCACCCATCGAGCTGCGGGCACCCCTGCCTCGGTATTTCTCCAGGACCCTGCAGTGTCTGGGGCTCTGCCAGCAGTAGT
CCCCTCTGTGTTGCCCCCAGAAAGCAGGGGATGGAGGCCTCTGGCCAGGCCCAAAGGATGGGGTCACTGTCAGCTGCTGTAAGGCCATGGCTTACGTCCCAGATATGTGTCTAGGCAAATCTGAGAAC
AGGTTTTGGGATGTCAGGTGGGTGACTGCTCTGTGGACTTGAAATAATAAAAGGTTCTAACCTCA

hide sequence

RefSeq Acc Id:

XM_005413037 ⟹ XP_005413094

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955561	1,358,003 - 1,361,634 (-)	NCBI

Sequence:

show sequence

GCGCAGCAAGAGAGCATGGGGGCGGGGCTAGATGCGCACGCGCACAGCGCCTCCCGGGAAATGGGCGCGCTCGTGGCGTGGGGTCGGGGCGTGGGTGGCTGGCGGCTGGCGCTGGGAGCCCGCTTGCC
GCCCTGGGACGCAGGCTTCTGCACTGAGCCCGGGCTTCAGTCGTGGCGCGGCGGCGACCGCGAGGCGCTGCTGCTCGAGCTGCGGGCCGCCGTGGTGGAGCACAGAGGACCTCTGGTGACGCTGAACA
AGCCGCAGGGTCTGCCGGTGACAGGTATGGGCAGCGGCGAAAAAAGGAAAACCTGGAGAGCTGACGTTGCTCTCCGTGTTGCCAGACCTGAGCCAGTCCCTGGGTTGTCCGAGCCTCCAGGTGATCCG
AGCGCCGGGGAAGGAGACTTCTGGGCTTGTGCTCCTTTCCACTTGTCCCCAGACAGCGAGCCGTCTCCAGAAGTTCTTCATCCGCTCGAGGAGAGCCCACAGGCCCACAGCCACATACTGGTGATTCC
GGTGAAGTGCCCATCTCGAAGGGACCTCTTGGAGGGTGTCAAGAGGACCCTCAGCCACTTCCGTGTAATGGCCACAGGCTCTGGCTGTGCCCTGATCCAGCTGCAGCCCCTCACATTGTTCCCCAGTC
AGCTGCAGGTACACATGATGCTGCAGCTCTGCCCTGTGCTTGGGGACCACACCTATTCTGCTCGAGCGGGCACTGTCCTGGGCCAGCGCTTTCTGTTGTCTGCTGAGAACACTAAGCCTCAAAGACAG
GCCCTGGATGATGCCCTCCTCAGACGCCTCCACCTGACCCCTGCCCAGGCCGCACAGCTGCCCTTGCACCTGCACCTGCACCAGCTGCTCCTCCCCGGCAGCAGGCCTGCCGATGCACCCATCGAGCT
GCGGGCACCCCTGCCTCGGTATTTCTCCAGGACCCTGCAGTGTCTGGGGCTCTGCCAGCAGTAGTCCCCTCTGTGTTGCCCCCAGAAAGCAGGGGATGGAGGCCTCTGGCCAGGCCCAAAGGATGGGG
TCACTGTCAGCTGCTGTAAGGCCATGGCTTACGTCCCAGATATGTGTCTAGGCAAATCTGAGAACAGGTTTTGGGATGTCAGGTGGGTGACTGCTCTGTGGACTTGAAATAATAAAAGGTTCTAACCT
CA

hide sequence

RefSeq Acc Id:

XM_005413038 ⟹ XP_005413095

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955561	1,358,003 - 1,361,634 (-)	NCBI

Sequence:

show sequence

GCGCAGCAAGAGAGCATGGGGGCGGGGCTAGATGCGCACGCGCACAGCGCCTCCCGGGAAATGG
GCGCGCTCGTGGCGTGGGGTCGGGGCGTGGGTGGCTGGCGGCTGGCGCTGGGAGCCCGCTTGCCGCCCTGGGACGCAGGCTTCTGCACTGAGCCCGGGCTTCAGTCGTGGCGCGGCGGCGACCGCGAG
GCGCTGCTGCTCGAGCTGCGGGCCGCCGTGGTGGAGCACAGAGGACCTCTGGTGACGCTGAACAAGCCGCAGGGTCTGCCGGTGACAGGAAAACCTGGAGAGCTGACGTTGCTCTCCGTGTTGCCAGA
CCTGAGCCAGTCCCTGGGTTGTCCGAGCCTCCAGGGAGACTTCTGGGCTTGTGCTCCTTTCCACTTGTCCCCAGACAGCGAGCCGTCTCCAGAAGTTCTTCATCCGCTCGAGGAGAGCCCACAGGCCC
ACAGCCACATACTGGTGATTCCGGTGAAGTGCCCATCTCGAAGGGACCTCTTGGAGGGTGTCAAGAGGACCCTCAGCCACTTCCGTGTAATGGCCACAGGCTCTGGCTGTGCCCTGATCCAGCTGCAG
CCCCTCACATTGTTCCCCAGTCAGCTGCAGGTACACATGATGCTGCAGCTCTGCCCTGTGCTTGGGGACCACACCTATTCTGCTCGAGCGGGCACTGTCCTGGGCCAGCGCTTTCTGTTGTCTGCTGA
GAACACTAAGCCTCAAAGACAGGCCCTGGATGATGCCCTCCTCAGACGCCTCCACCTGACCCCTGCCCAGGCCGCACAGCTGCCCTTGCACCTGCACCTGCACCAGCTGCTCCTCCCCGGCAGCAGGC
CTGCCGATGCACCCATCGAGCTGCGGGCACCCCTGCCTCGGTATTTCTCCAGGACCCTGCAGTGTCTGGGGCTCTGCCAGCAGTAGTCCCCTCTGTGTTGCCCCCAGAAAGCAGGGGATGGAGGCCTC
TGGCCAGGCCCAAAGGATGGGGTCACTGTCAGCTGCTGTAAGGCCATGGCTTACGTCCCAGATATGTGTCTAGGCAAATCTGAGAACAGGTTTTGGGATGTCAGGTGGGTGACTGCTCTGTGGACTTG
AAATAATAAAAGGTTCTAACCTCA

hide sequence

RefSeq Acc Id:

XM_013509112 ⟹ XP_013364566

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955561	1,358,298 - 1,361,634 (-)	NCBI

Sequence:

show sequence

GCGCAGCAAGAGAGCATGGGGGCGGGGCTAGATGCGCACGCGCACAGCGCCTCCCGGGAAATGG
GCGCGCTCGTGGCGTGGGGTCGGGGCGTGGGTGGCTGGCGGCTGGCGCTGGGAGCCCGCTTGCCGCCCTGGGACGCAGGCTTCTGCACTGAGCCCGGGCTTCAGTCGTGGCGCGGCGGCGACCGCGAG
GCGCTGCTGCTCGAGCTGCGGGCCGCCGTGGTGGAGCACAGAGGACCTCTGGTGACGCTGAACAAGCCGCAGGGTCTGCCGGTGACAGGAAAACCTGGAGAGCTGACGTTGCTCTCCGTGTTGCCAGA
CCTGAGCCAGTCCCTGGGTTGTCCGAGCCTCCAGGTGATCCGAGCGCCGGGGAAGGAGACTTCTGGGCTTGTGCTCCTTTCCACTTGTCCCCAGACAGCGAGCCGTCTCCAGAAGTTCTTCATCCGCT
CGAGGAGAGCCCACAGGCCCACAGCCACATACTGGGCGGTTACCAATGGGATCCCGGATGCTTCTGAGGGGCAGATCCTCGCAGCGCTGACACTGCAGCACATTGGTGGTGTCAGTGTCGTAAGTTGG
GGTCAGCAGGGAAGAGGCAGGTCCCTCCATGTGTGTCACCCTACATGGGCAGGTGATTCCGGTGAAGTGCCCATCTCGAAGGGACCTCTTGGAGGGTGTCAAGAGGACCCTCAGCCACTTCCGTGTAA
TGGCCACAGGCTCTGGCTGTGCCCTGATCCAGCTGCAGCCCCTCACATTGTTCCCCAGTCAGCTGCAGGTACACATGATGCTGCAGCTCTGCCCTGTGCTTGGGGACCACACCTATTCTGCTCGAGCG
GGCACTGTCCTGGGCCAGCGCTTTCTGTTGTCTGCTGAGAACACTAAGCCTCAAAGACAGGCCCTGGATGATGCCCTCCTCAGACGCCTCCACCTGACCCCTGCCCAGGCCGCACAGCTGCCCTTGCA
CCTGCACCTGCACCAGCTGCTCC

hide sequence


Protein RefSeqs	XP_005413093	(Get FASTA)	NCBI Sequence Viewer
	XP_005413094	(Get FASTA)	NCBI Sequence Viewer
	XP_005413095	(Get FASTA)	NCBI Sequence Viewer
	XP_013364566	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004556
	ENSCLAP00000004556.1

RefSeq Acc Id:

XP_005413095 ⟸ XM_005413038

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGAGLDAHAHSASREMGALVAWGRGVGGWRLALGARLPPWDAGFCTEPGLQSWRGGDREALLLELRAAVVEHRGPLVTLNKPQGLPVTGKPGELTLLSVLPDLSQSLGCPSLQGDFWACAPFHLSPDS
EPSPEVLHPLEESPQAHSHILVIPVKCPSRRDLLEGVKRTLSHFRVMATGSGCALIQLQPLTLFPSQLQVHMMLQLCPVLGDHTYSARAGTVLGQRFLLSAENTKPQRQALDDALLRRLHLTPAQAAQ
LPLHLHLHQLLLPGSRPADAPIELRAPLPRYFSRTLQCLGLCQQ

hide sequence

RefSeq Acc Id:

XP_005413093 ⟸ XM_005413036

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGAGLDAHAHSASREMGALVAWGRGVGGWRLALGARLPPWDAGFCTEPGLQSWRGGDREALLLE
LRAAVVEHRGPLVTLNKPQGLPVTGKPGELTLLSVLPDLSQSLGCPSLQVIRAPGKETSGLVLLSTCPQTASRLQKFFIRSRRAHRPTATYWAVTNGIPDASEGQILAALTLQHIGGVSVVIPVKCPS
RRDLLEGVKRTLSHFRVMATGSGCALIQLQPLTLFPSQLQVHMMLQLCPVLGDHTYSARAGTVLGQRFLLSAENTKPQRQALDDALLRRLHLTPAQAAQLPLHLHLHQLLLPGSRPADAPIELRAPLP
RYFSRTLQCLGLCQQ

hide sequence

RefSeq Acc Id:	XP_005413094 ⟸ XM_005413037
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2UQZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGAGLDAHAHSASREMGALVAWGRGVGGWRLALGARLPPWDAGFCTEPGLQSWRGGDREALLLE LRAAVVEHRGPLVTLNKPQGLPVTGMGSGEKRKTWRADVALRVARPEPVPGLSEPPGDPSAGEGDFWACAPFHLSPDSEPSPEVLHPLEESPQAHSHILVIPVKCPSRRDLLEGVKRTLSHFRVMATG SGCALIQLQPLTLFPSQLQVHMMLQLCPVLGDHTYSARAGTVLGQRFLLSAENTKPQRQALDDALLRRLHLTPAQAAQLPLHLHLHQLLLPGSRPADAPIELRAPLPRYFSRTLQCLGLCQQ hide sequence

RefSeq Acc Id:

XP_013364566 ⟸ XM_013509112

- Peptide Label:

isoform X4

- Sequence:

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MGAGLDAHAHSASREMGALVAWGRGVGGWRLALGARLPPWDAGFCTEPGLQSWRGGDREALLLELRAAVVEHRGPLVTLNKPQGLPVTGKPGELTLLSVLPDLSQSLGCPSLQVIRAPGKETSGLVLL
STCPQTASRLQKFFIRSRRAHRPTATYWAVTNGIPDASEGQILAALTLQHIGGVSVVSWGQQGRGRSLHVCHPTWAGDSGEVPISKGPLGGCQEDPQPLPCNGHRLWLCPDPAAAPHIVPQSAAGTHD
AAALPCAWGPHLFCSSGHCPGPALSVVC

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Ensembl Acc Id:

ENSCLAP00000004556 ⟸ ENSCLAT00000004641

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003240	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004641	ENTREZGENE
	ENSCLAT00000004641.1	UniProtKB/TrEMBL
Gene3D-CATH	Pseudouridine synthase	UniProtKB/TrEMBL
InterPro	PsdUridine_synth_cat_dom_sf	UniProtKB/TrEMBL
	RluA_PseudoU_synthase	UniProtKB/TrEMBL
NCBI Gene	Rpusd3	ENTREZGENE
PANTHER	MITOCHONDRIAL MRNA PSEUDOURIDINE SYNTHASE RPUSD3	UniProtKB/TrEMBL
	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF55120	UniProtKB/TrEMBL
UniProt	A0A8C2UQZ8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-09-18	Rpusd3	RNA pseudouridine synthase D3		RNA pseudouridylate synthase domain containing 3	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar