Mir23b (microRNA 23b) - Rat Genome Database
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Gene: Mir23b (microRNA 23b) Mus musculus
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Symbol: Mir23b
Name: microRNA 23b
RGD ID: 1607669
MGI Page MGI
Description: Is expressed in brain; lung; and tooth. Orthologous to human MIR23B (microRNA 23b).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Mirn; Mirn23b; mmu-mir-2; mmu-mir-23b
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391363,448,298 - 63,448,371 (+)NCBIGRCm39mm39
GRCm39 Ensembl1363,448,298 - 63,448,371 (+)Ensembl
GRCm381363,300,484 - 63,300,557 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1363,300,484 - 63,300,557 (+)EnsemblGRCm38mm10GRCm38
MGSCv371363,401,792 - 63,401,865 (+)NCBIGRCm37mm9NCBIm37
Celera1364,954,665 - 64,954,738 (+)NCBICelera
Cytogenetic Map13B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Additional References at PubMed
PMID:12007417   PMID:12554860   PMID:15538371   PMID:15845075   PMID:16381832   PMID:16882971   PMID:17369397   PMID:17604727   PMID:18346711   PMID:18452032   PMID:18716031   PMID:18762567  
PMID:19559694   PMID:19582816   PMID:20215419   PMID:20413612   PMID:20736237   PMID:20805985   PMID:21267068   PMID:21536891   PMID:22570807   PMID:22660635   PMID:22753148   PMID:23646144  
PMID:24356489   PMID:24586284   PMID:24651435   PMID:25751060   PMID:25781629   PMID:25858512   PMID:26107743   PMID:26646104   PMID:26748386   PMID:26820568   PMID:26834155   PMID:26839366  
PMID:27232518   PMID:27636893   PMID:28062322   PMID:28096318   PMID:29288704   PMID:29710503   PMID:29906231   PMID:30188966   PMID:30578296   PMID:31103821   PMID:31138100   PMID:31425535  
PMID:31958315  


Genomics

Comparative Map Data
Mir23b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391363,448,298 - 63,448,371 (+)NCBIGRCm39mm39
GRCm39 Ensembl1363,448,298 - 63,448,371 (+)Ensembl
GRCm381363,300,484 - 63,300,557 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1363,300,484 - 63,300,557 (+)EnsemblGRCm38mm10GRCm38
MGSCv371363,401,792 - 63,401,865 (+)NCBIGRCm37mm9NCBIm37
Celera1364,954,665 - 64,954,738 (+)NCBICelera
Cytogenetic Map13B3NCBI
MIR23B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl995,085,208 - 95,085,304 (+)EnsemblGRCh38hg38GRCh38
GRCh38995,085,208 - 95,085,304 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37997,847,490 - 97,847,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36996,887,310 - 96,887,406 (+)NCBINCBI36hg18NCBI36
Celera968,288,521 - 68,288,617 (+)NCBI
Cytogenetic Map9q22.32NCBI
HuRef967,457,043 - 67,457,139 (+)NCBIHuRef
CHM1_1997,993,968 - 97,994,064 (+)NCBICHM1_1
Mir23b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2171,813,667 - 1,813,763 (-)NCBI
Rnor_6.0 Ensembl17823,222 - 823,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.017823,222 - 823,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.017816,035 - 816,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera17708,984 - 709,080 (+)NCBICelera
Cytogenetic Map17p14NCBI
MIR23B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl171,678,346 - 71,678,416 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1171,678,353 - 71,678,406 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR23B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1027,080,197 - 27,080,276 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11027,080,197 - 27,080,276 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21031,341,114 - 31,341,193 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Position Markers
BE113529  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381363,300,438 - 63,300,625UniSTSGRCm38
MGSCv371363,401,746 - 63,401,933UniSTSGRCm37
Celera1364,954,619 - 64,954,806UniSTS
Cytogenetic Map13B3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13390000075900000Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20293442112761890Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132043134272237070Mouse
10755517Chol15_mcholesterol 15 (mouse)133081599164815991Mouse
10755533Chol18_mcholesterol 18 (mouse)133081599164815991Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133097563464975634Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133119126065191260Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133476790768768045Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133587692596102654Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133594749469947604Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133594749469947604Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133599078469990868Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133857254572572704Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133948143673481584Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133948143673481584Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133948143673481584Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134044044074440440Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134134122875341344Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4505696683596627Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134505696683596627Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134770000073000000Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5017034784170495Mouse
1300916Mobe2_mmodifier of obesity 2 (mouse)Not determined135017034784170495Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135017034784170495Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135046870984468908Mouse
14746975Manh74_mmandible shape 74 (mouse)135232915086329150Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135367266487672778Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135523686189237021Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55572541112294569Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55572541112294569Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55572541112294569Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55572541112294569Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135632264376823195Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356322643105285678Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135648143696102654Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135898448192984619Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Smad5mmu-miR-23b-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI20216554
Smad5mmu-miR-23b-3pMirtarbaseexternal_infoIn situ hybridization//Luciferase reporter assay//Functional MTI19582816
Hes1mmu-miR-23b-3pMirtarbaseexternal_infoUnknown//Western blotFunctional MTI14510471
Hes1mmu-miR-23b-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI17150554
Celf1mmu-miR-23b-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI20299448
Rtl1mmu-miR-23b-3pMirtarbaseexternal_infoImmunoprecipitaion//Luciferase reporter assay//qRTFunctional MTI18716031
Lmnb1mmu-miR-23b-3pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI19259393
Srcmmu-miR-23b-3pOncomiRDBexternal_infoNANA23074286
Ptk2bmmu-miR-23b-3pOncomiRDBexternal_infoNANA22745829
Vhlmmu-miR-23b-3pOncomiRDBexternal_infoNANA22649212
Fzd7mmu-miR-23b-3pOncomiRDBexternal_infoNANA22109528
Plaummu-miR-23b-3pOncomiRDBexternal_infoNANA21242962
Prodhmmu-miR-23b-3pOncomiRDBexternal_infoNANA20562915
Plaurmmu-miR-23b-3pOncomiRDBexternal_infoNANA19490101
Gls2mmu-miR-23b-3pOncomiRDBexternal_infoNANA19219026
Hes1mmu-miR-23b-5pMirecordsexternal_infoNANA17150554
Hes1mmu-miR-23b-5pMirecordsexternal_info{unchanged}NA14510471
Mdh2mmu-miR-23b-5pMirecordsexternal_infoNANA18716031
Lmnb1mmu-miR-23b-5pMirecordsexternal_info{unchanged}NA19259393
Smad3mmu-miR-23b-5pMirecordsexternal_infoNANA19582816

Predicted Targets
Summary Value
Count of predictions:24500
Count of gene targets:10663
Count of transcripts:18216
Interacting mature miRNAs:mmu-miR-23b-3p, mmu-miR-23b-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1363,300,484 - 63,300,557 (+)Ensembl
RefSeq Acc Id: NR_029530
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,448,298 - 63,448,371 (+)NCBI
GRCm381363,300,484 - 63,300,557 (+)ENTREZGENE
MGSCv371363,401,792 - 63,401,865 (+)RGD
Celera1364,954,665 - 64,954,738 (+)RGD
cM Map13 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676898 AgrOrtholog
Ensembl Genes ENSMUSG00000065599 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083665 ENTREZGENE
MGD MGI:2676898 ENTREZGENE
miRBase MI0000141 ENTREZGENE
NCBI Gene 387217 ENTREZGENE
PhenoGen Mir23b PhenoGen
RNAcentral URS0000183BED RNACentral
  URS00005B5CA1 RNACentral
  URS000075D4CE RNACentral