LHX8 (LIM homeobox 8) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LHX8 (LIM homeobox 8) Homo sapiens
Analyze
Symbol: LHX8
Name: LIM homeobox 8
RGD ID: 1606630
HGNC Page HGNC:28838
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in forebrain neuron development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including female gonad development; forebrain neuron differentiation; and odontogenesis of dentin-containing tooth. Predicted to be located in chromatin. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Lhx7; LIM homeobox protein 8; LIM-homeodomain protein Lhx8; LIM/homeobox protein Lhx8
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,128,434 - 75,199,454 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,128,434 - 75,161,533 (+)EnsemblGRCh38hg38GRCh38
GRCh37175,594,119 - 75,627,218 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,366,707 - 75,399,806 (+)NCBINCBI36Build 36hg18NCBI36
Celera173,839,451 - 73,872,551 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef173,728,993 - 73,762,092 (+)NCBIHuRef
CHM1_1175,709,516 - 75,742,604 (+)NCBICHM1_1
T2T-CHM13v2.0174,970,280 - 75,041,301 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LHX8HumanBinge Drinking  ISOLhx8 (Rattus norvegicus)597538603mRNA:decreased expression:basal forebrain cholinergic neuronsRGD 

1 to 20 of 78 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LHX8Human1-naphthyl isothiocyanate decreases expressionISOLhx8 (Rattus norvegicus)64804641-Naphthylisothiocyanate results in decreased expression of LHX8 mRNACTDPMID:30723492
LHX8Human17beta-estradiol multiple interactionsISOLhx8 (Rattus norvegicus)6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of LHX8 mRNACTDPMID:32741896
LHX8Human17beta-estradiol 3-benzoate multiple interactionsISOLhx8 (Rattus norvegicus)6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of LHX8 mRNACTDPMID:32741896
LHX8Human2,3',4,4',5-Pentachlorobiphenyl increases expressionISOLhx8 (Mus musculus)64804642 more ...CTDPMID:31388691
LHX8Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOLhx8 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of LHX8 mRNACTDPMID:21570461 and PMID:24058054
LHX8Human3-chloropropane-1,2-diol increases expressionISOLhx8 (Rattus norvegicus)6480464alpha-Chlorohydrin results in increased expression of LHX8 mRNACTDPMID:28522335
LHX8Human4,4'-diaminodiphenylmethane decreases expressionISOLhx8 (Rattus norvegicus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of LHX8 mRNACTDPMID:30723492
LHX8Human6-propyl-2-thiouracil decreases expressionISOLhx8 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of LHX8 mRNACTDPMID:30047161
LHX8Humanacetamide decreases expressionISOLhx8 (Rattus norvegicus)6480464acetamide results in decreased expression of LHX8 mRNACTDPMID:31881176
LHX8Humanaflatoxin B1 affects expressionEXP 6480464Aflatoxin B1 affects the expression of LHX8 proteinCTDPMID:20106945
LHX8Humanall-trans-retinoic acid increases expressionISOLhx8 (Mus musculus)6480464Tretinoin results in increased expression of LHX8 mRNACTDPMID:16000160
LHX8Humanall-trans-retinoic acid increases expressionEXP 6480464Tretinoin results in increased expression of LHX8 mRNACTDPMID:21934132
LHX8Humanalpha-Zearalanol increases expressionISOLhx8 (Rattus norvegicus)6480464Zeranol results in increased expression of LHX8 mRNACTDPMID:35163327
LHX8Humanammonium chloride affects expressionISOLhx8 (Rattus norvegicus)6480464Ammonium Chloride affects the expression of LHX8 mRNACTDPMID:16483693
LHX8Humanamosite asbestos decreases methylationEXP 6480464Asbestos and Amosite results in decreased methylation of LHX8 promoterCTDPMID:29626692
LHX8Humanarsane increases methylationEXP 6480464Arsenic results in increased methylation of LHX8 geneCTDPMID:24525453
LHX8Humanarsane affects methylationEXP 6480464Arsenic affects the methylation of LHX8 geneCTDPMID:25304211
LHX8Humanarsenic atom increases methylationEXP 6480464Arsenic results in increased methylation of LHX8 geneCTDPMID:24525453
LHX8Humanarsenic atom affects methylationEXP 6480464Arsenic affects the methylation of LHX8 geneCTDPMID:25304211
LHX8Humanarsenite(3-) increases methylationEXP 6480464arsenite results in increased methylation of LHX8 promoterCTDPMID:23974009

1 to 20 of 78 rows

Biological Process
1 to 11 of 11 rows

  
1 to 11 of 11 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LHX8Humanchromatin located_inISAtfclass:3.1.5150520179 NTNU_SBGO_REF:0000113
LHX8Humanfemale germ cell nucleus located_inISOLhx8 (Mus musculus)9068941 PMID:18753606MGIPMID:18753606
LHX8Humannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
LHX8Humannucleus is_active_inIBAFB:FBgn0267978 more ...150520179 GO_CentralGO_REF:0000033
LHX8Humannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
LHX8Humannucleus located_inIEAUniRule:UR000401037150520179 UniProtGO_REF:0000104

Molecular Function
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LHX8HumanDNA binding enablesIEAUniProtKB-KW:KW-0238 and UniProtKB-KW:KW-0371150520179 UniProtGO_REF:0000043
LHX8HumanDNA binding enablesIEAUniRule:UR000401037150520179 UniProtGO_REF:0000104
LHX8HumanDNA binding enablesIEAInterPro:IPR001356150520179 InterProGO_REF:0000002
LHX8HumanDNA-binding transcription factor activity, RNA polymerase II-specific enablesIEAInterPro:IPR017970150520179 InterProGO_REF:0000002
LHX8HumanDNA-binding transcription factor activity, RNA polymerase II-specific enablesIBAMGI:1100513 more ...150520179 GO_CentralGO_REF:0000033
LHX8HumanDNA-binding transcription factor activity, RNA polymerase II-specific enablesISAtfclass:3.1.5150520179 NTNU_SBGO_REF:0000113
LHX8Humanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
LHX8Humanprotein binding enablesIPIUniProtKB:Q6QHK4150520179 PMID:33961781IntActPMID:33961781
LHX8Humanprotein binding enablesIPIUniProtKB:O15353 more ...150520179 PMID:32296183IntActPMID:32296183
LHX8Humanprotein binding enablesIPIUniProtKB:G5E9A7 more ...150520179 PMID:32814053IntActPMID:32814053
LHX8Humanprotein binding enablesIPIUniProtKB:P57682 more ...150520179 PMID:25416956IntActPMID:25416956
LHX8Humanprotein binding enablesIPIUniProtKB:A0A0S2Z4M1150520179 PMID:26871637IntActPMID:26871637
LHX8Humanprotein binding enablesIPIUniProtKB:Q86U70150520179 PMID:35140242IntActPMID:35140242
LHX8HumanRNA polymerase II transcription regulatory region sequence-specific DNA binding enablesIBAFB:FBgn0267978 more ...150520179 GO_CentralGO_REF:0000033
LHX8Humansequence-specific DNA binding enablesIEAARBA:ARBA00026779150520179 UniProtGO_REF:0000117
LHX8Humansequence-specific double-stranded DNA binding enablesIDA 150520179 PMID:28473536ARUK-UCLPMID:28473536
1 to 16 of 16 rows


#
Reference Title
Reference Citation
1. HMGB1 neuroimmune signaling and REST-G9a gene repression contribute to ethanol-induced reversible suppression of the cholinergic neuron phenotype. Crews FT, etal., Mol Psychiatry. 2023 Dec;28(12):5159-5172. doi: 10.1038/s41380-023-02160-6. Epub 2023 Jul 4.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:9598319   PMID:10611327   PMID:12477932   PMID:14702039   PMID:16327884   PMID:16690745   PMID:17207965   PMID:17305537   PMID:17624344   PMID:18574220   PMID:18978678   PMID:19274049  
PMID:20082688   PMID:20572854   PMID:20634891   PMID:20672350   PMID:21143530   PMID:21462296   PMID:21856374   PMID:21873635   PMID:22204396   PMID:22435649   PMID:23455924   PMID:24316404  
PMID:24981860   PMID:25416956   PMID:25814554   PMID:26186194   PMID:26871637   PMID:28473536   PMID:28514442   PMID:32296183   PMID:32814053   PMID:33961781   PMID:35140242   PMID:35152224  
PMID:36029299   PMID:36366827   PMID:36602025   PMID:38703583  



LHX8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,128,434 - 75,199,454 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,128,434 - 75,161,533 (+)EnsemblGRCh38hg38GRCh38
GRCh37175,594,119 - 75,627,218 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,366,707 - 75,399,806 (+)NCBINCBI36Build 36hg18NCBI36
Celera173,839,451 - 73,872,551 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef173,728,993 - 73,762,092 (+)NCBIHuRef
CHM1_1175,709,516 - 75,742,604 (+)NCBICHM1_1
T2T-CHM13v2.0174,970,280 - 75,041,301 (+)NCBIT2T-CHM13v2.0
Lhx8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393154,011,925 - 154,036,190 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3154,011,931 - 154,036,296 (-)EnsemblGRCm39 Ensembl
GRCm383154,306,288 - 154,330,560 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3154,306,294 - 154,330,659 (-)EnsemblGRCm38mm10GRCm38
MGSCv373153,969,257 - 153,993,524 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363154,242,163 - 154,265,944 (-)NCBIMGSCv36mm8
Celera3160,766,458 - 160,790,689 (-)NCBICelera
Cytogenetic Map3H4NCBI
cM Map379.12NCBI
Lhx8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82245,904,712 - 245,929,376 (-)NCBIGRCr8
mRatBN7.22243,244,958 - 243,269,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2243,244,961 - 243,269,416 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2251,069,403 - 251,090,965 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02248,963,243 - 248,984,805 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02243,862,639 - 243,884,232 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02260,572,205 - 260,598,744 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2260,574,190 - 260,596,777 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02279,235,991 - 279,260,188 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42252,216,608 - 252,239,112 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12252,231,217 - 252,253,719 (-)NCBI
Celera2235,171,406 - 235,193,860 (-)NCBICelera
Cytogenetic Map2q45NCBI
Lhx8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542317,644,871 - 17,668,781 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542317,644,691 - 17,668,969 (-)NCBIChiLan1.0ChiLan1.0
LHX8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21151,724,416 - 151,752,072 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,884,884 - 150,912,497 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,356,372 - 74,383,984 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,324,804 - 76,357,879 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,324,804 - 76,357,879 (+)Ensemblpanpan1.1panPan2
LHX8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1671,329,711 - 71,355,851 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl671,329,820 - 71,352,945 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha673,992,529 - 74,018,201 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0671,921,509 - 71,947,201 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl671,920,999 - 71,947,701 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1671,416,782 - 71,442,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0671,362,129 - 71,387,952 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0671,856,878 - 71,882,562 (-)NCBIUU_Cfam_GSD_1.0
Lhx8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505886,811,952 - 86,842,076 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365712,326,920 - 2,351,779 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365712,326,851 - 2,352,428 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LHX8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6138,074,855 - 138,099,810 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16138,074,673 - 138,102,025 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26128,034,492 - 128,061,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LHX8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12058,016,078 - 58,043,651 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2058,017,298 - 58,041,479 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603359,429,912 - 59,454,728 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lhx8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474221,638,856 - 21,662,776 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474221,638,213 - 21,662,979 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in LHX8
33 total Variants

Predicted Target Of
Summary Value
Count of predictions:675
Count of miRNA genes:265
Interacting mature miRNAs:308
Transcripts:ENST00000294638, ENST00000356261, ENST00000559413, ENST00000607240
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
597329746GWAS1425820_Hneuroticism measurement, cognitive function measurement QTL GWAS1425820 (human)2e-14cognitive behavior trait (VT:0010450)17518078775180788Human
597188691GWAS1284765_Hnonanoylcarnitine (C9) measurement QTL GWAS1284765 (human)9e-12nonanoylcarnitine (C9) measurement17513930875139309Human
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
597225356GWAS1321430_Hself reported educational attainment QTL GWAS1321430 (human)2e-09self reported educational attainment17515087775150878Human
597225357GWAS1321431_Hself reported educational attainment QTL GWAS1321431 (human)2e-12self reported educational attainment17518078775180788Human
597205582GWAS1301656_Hgeneralized anxiety disorder QTL GWAS1301656 (human)4e-08generalized anxiety disorder17512946675129467Human
597183790GWAS1279864_Hhexanoylcarnitine measurement QTL GWAS1279864 (human)2e-16hexanoylcarnitine measurement17513930875139309Human
597526954GWAS1623028_Hdiverticulitis QTL GWAS1623028 (human)0.0000002diverticulitis17515971375159714Human
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human

1 to 10 of 15 rows
SHGC-149363  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37175,601,032 - 75,601,337UniSTSGRCh37
Build 36175,373,620 - 75,373,925RGDNCBI36
Celera173,846,364 - 73,846,669RGD
Cytogenetic Map1p31.1UniSTS
HuRef173,735,910 - 73,736,215UniSTS
TNG Radiation Hybrid Map141017.0UniSTS
SHGC-6203  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37175,615,914 - 75,616,018UniSTSGRCh37
Build 36175,388,502 - 75,388,606RGDNCBI36
Celera173,861,247 - 73,861,351RGD
Cytogenetic Map1p31.1UniSTS
HuRef173,750,789 - 73,750,893UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
157 517 342 316 1694 865 979 2 186 159 25 427 774 915 18 1453 165 784 900 162


1 to 16 of 16 rows
RefSeq Transcripts NM_001001933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001256114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB050476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH013373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENST00000294638   ⟹   ENSP00000294638
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl175,128,434 - 75,161,533 (+)Ensembl
Ensembl Acc Id: ENST00000356261   ⟹   ENSP00000348597
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl175,134,388 - 75,161,533 (+)Ensembl
Ensembl Acc Id: ENST00000607240
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl175,159,288 - 75,161,531 (+)Ensembl
Ensembl Acc Id: ENST00000696555   ⟹   ENSP00000512714
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl175,134,388 - 75,161,533 (+)Ensembl
RefSeq Acc Id: NM_001001933   ⟹   NP_001001933
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38175,128,434 - 75,161,533 (+)NCBI
GRCh37175,594,119 - 75,627,218 (+)RGD
Build 36175,366,707 - 75,399,806 (+)NCBI Archive
Celera173,839,451 - 73,872,551 (+)RGD
HuRef173,728,993 - 73,762,092 (+)ENTREZGENE
CHM1_1175,709,516 - 75,742,604 (+)NCBI
T2T-CHM13v2.0174,970,280 - 75,003,384 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001256114   ⟹   NP_001243043
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38175,134,388 - 75,161,533 (+)NCBI
GRCh37175,594,119 - 75,627,218 (+)NCBI
HuRef173,728,993 - 73,762,092 (+)NCBI
CHM1_1175,715,964 - 75,742,604 (+)NCBI
T2T-CHM13v2.0174,976,238 - 75,003,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017001316   ⟹   XP_016856805
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38175,134,388 - 75,199,454 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017001317   ⟹   XP_016856806
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38175,136,383 - 75,199,454 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047421040   ⟹   XP_047276996
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38175,136,383 - 75,161,533 (+)NCBI
RefSeq Acc Id: XM_054336668   ⟹   XP_054192643
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0174,976,238 - 75,041,301 (+)NCBI
RefSeq Acc Id: XM_054336669   ⟹   XP_054192644
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0174,978,184 - 75,003,384 (+)NCBI
1 to 5 of 10 rows
1 to 5 of 10 rows
RefSeq Acc Id: NP_001001933   ⟸   NM_001001933
- Peptide Label: isoform 1
- UniProtKB: E9PGE3 (UniProtKB/Swiss-Prot),   Q68G74 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001243043   ⟸   NM_001256114
- Peptide Label: isoform 2
- UniProtKB: Q68G74 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016856805   ⟸   XM_017001316
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016856806   ⟸   XM_017001317
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSP00000294638   ⟸   ENST00000294638
Homeobox   LIM zinc-binding

Name Modeler Protein Id AA Range Protein Structure
AF-Q68G74-F1-model_v2 AlphaFold Q68G74 1-356 view protein structure



1 to 39 of 39 rows
Database
Acc Id
Source(s)
COSMIC LHX8 COSMIC
Ensembl Genes ENSG00000162624 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000294638 ENTREZGENE
  ENST00000294638.9 UniProtKB/Swiss-Prot
  ENST00000356261 ENTREZGENE
  ENST00000356261.4 UniProtKB/Swiss-Prot
Gene3D-CATH Cysteine Rich Protein UniProtKB/Swiss-Prot
  Homeodomain-like UniProtKB/Swiss-Prot
GTEx ENSG00000162624 GTEx
HGNC ID HGNC:28838 ENTREZGENE
Human Proteome Map LHX8 Human Proteome Map
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot
  Homeobox_CS UniProtKB/Swiss-Prot
  Homeobox_dom UniProtKB/Swiss-Prot
  LIM_Homeobox_TF UniProtKB/Swiss-Prot
  Znf_LIM UniProtKB/Swiss-Prot
KEGG Report hsa:431707 UniProtKB/Swiss-Prot
NCBI Gene 431707 ENTREZGENE
OMIM 604425 OMIM
PANTHER LIM/HOMEOBOX PROTEIN LHX UniProtKB/Swiss-Prot
  LIM/HOMEOBOX PROTEIN LHX8 UniProtKB/Swiss-Prot
Pfam Homeodomain UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
PharmGKB PA142671553 PharmGKB
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot
  HOMEOBOX_2 UniProtKB/Swiss-Prot
  LIM_DOMAIN_1 UniProtKB/Swiss-Prot
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot
SMART HOX UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF46689 UniProtKB/Swiss-Prot
UniProt A0A8Q3WLD2_HUMAN UniProtKB/TrEMBL
  E9PGE3 ENTREZGENE
  LHX8_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q6SV70_HUMAN UniProtKB/TrEMBL
  Q6SV71_HUMAN UniProtKB/TrEMBL
  Q9BYB7_HUMAN UniProtKB/TrEMBL
UniProt Secondary E9PGE3 UniProtKB/Swiss-Prot
1 to 39 of 39 rows