Speer4cl7 (spermatogenesis associated glutamate (E)-rich protein 4C like 7) - Rat Genome Database

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Gene: Speer4cl7 (spermatogenesis associated glutamate (E)-rich protein 4C like 7) Rattus norvegicus
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Symbol: Speer4cl7
Name: spermatogenesis associated glutamate (E)-rich protein 4C like 7
RGD ID: 1596470
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: disks large homolog 5-like; LOC685226; similar to spermatogenesis associated glutamate (E)-rich protein 4d; spermatogenesis associated glutamate (E)-rich protein 4b-like; spermatogenesis associated glutamate (E)-rich protein 4CA like 7; uncharacterized protein LOC685226
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81939,386,637 - 39,391,470 (+)NCBIGRCr8
mRatBN7.21922,835,347 - 22,839,939 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01936,175,594 - 36,182,483 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01947,044,648 - 47,052,137 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,295,071 - 24,298,895 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1922,209,352 - 22,213,530 (+)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Speer4cl7
257 total Variants

1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat

1 to 10 of 27 rows






RefSeq Acc Id: XM_039098185   ⟹   XP_038954113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81939,386,656 - 39,391,470 (+)NCBI
mRatBN7.21922,835,374 - 22,838,948 (+)NCBI
RefSeq Acc Id: XM_063278605   ⟹   XP_063134675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81939,386,656 - 39,391,470 (+)NCBI
RefSeq Acc Id: XM_063278606   ⟹   XP_063134676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81939,386,637 - 39,391,470 (+)NCBI
Protein RefSeqs XP_038954113 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134675 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134676 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038954113   ⟸   XM_039098185
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063134676   ⟸   XM_063278606
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063134675   ⟸   XM_063278605
- Peptide Label: isoform X1



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-6165 BioCyc
NCBI Gene 685226 ENTREZGENE
PhenoGen Speer4cl7 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-12 Speer4cl7  spermatogenesis associated glutamate (E)-rich protein 4C like 7  Speer4cl2  spermatogenesis associated glutamate (E)-rich protein 4C like 2  Name and Symbol changed 629549 APPROVED
2023-09-19 Speer4cl2  spermatogenesis associated glutamate (E)-rich protein 4C like 2  LOC685226  similar to spermatogenesis associated glutamate (E)-rich protein 4d  Symbol and Name Changed 1299863 APPROVED
2013-05-24 LOC685226  similar to spermatogenesis associated glutamate (E)-rich protein 4d  LOC100365513  spermatogenesis associated glutamate (E)-rich protein 4b-like  Data merged from RGD:2318869 1643240 APPROVED
2010-05-05 LOC100365513  spermatogenesis associated glutamate (E)-rich protein 4b-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC685226  similar to spermatogenesis associated glutamate (E)-rich protein 4d  LOC684275  similar to spermatogenesis associated glutamate (E)-rich protein 4d  Data merged from RGD:1592672 1643240 APPROVED
2006-11-20 LOC685226  similar to spermatogenesis associated glutamate (E)-rich protein 4d      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684275  similar to spermatogenesis associated glutamate (E)-rich protein 4d      Symbol and Name status set to provisional 70820 PROVISIONAL