Dnajb3 (DnaJ heat shock protein family (Hsp40) member B3)

Gene: Dnajb3 (DnaJ heat shock protein family (Hsp40) member B3) Rattus norvegicus

Analyze

Symbol:

Dnajb3

Name:

DnaJ heat shock protein family (Hsp40) member B3

RGD ID:

1594215

Description:

Predicted to enable protein folding chaperone; protein-folding chaperone binding activity; and unfolded protein binding activity. Predicted to be involved in chaperone-mediated protein folding. Predicted to be located in acrosomal vesicle and centrosome. Predicted to be active in cytoplasm and nucleus. Orthologous to human DNAJB3 (DnaJ heat shock protein family (Hsp40) member B3); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

DnaJ (Hsp40) homolog, subfamily B, member 3; dnaJ homolog subfamily B member 3; LOC680216; similar to DnaJ (Hsp40) homolog, subfamily B, member 3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	96,243,345 - 96,244,358 (-)	NCBI		GRCr8
mRatBN7.2	9	88,795,542 - 88,796,555 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	88,795,488 - 88,796,560 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	97,219,362 - 97,220,375 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	102,355,554 - 102,356,567 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	100,723,739 - 100,724,752 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	95,289,918 - 95,290,931 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	95,289,918 - 95,290,931 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	94,977,133 - 94,978,146 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	87,085,458 - 87,086,471 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	86,356,834 - 86,357,847 (-)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Joubert syndrome 22 (ISO)

Perlman syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

buta-1,3-diene (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

chromium(6+) (ISO)

dichloroacetic acid (ISO)

dimethylarsinic acid (ISO)

diuron (EXP)

elemental selenium (ISO)

endosulfan (EXP)

fenvalerate (EXP)

furan (EXP)

methylarsonic acid (ISO)

resveratrol (ISO)

selenium atom (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

testosterone (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chaperone-mediated protein folding (IBA)

Cellular Component

acrosomal vesicle (ISO)

centrosome (ISO)

cytoplasm (IBA,ISO)

nucleus (IBA)

Molecular Function

Hsp70 protein binding (IEA)

protein binding (ISO)

protein folding chaperone (IBA)

protein-folding chaperone binding (IBA)

unfolded protein binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11466217	PMID:23376485	PMID:25446099

Genomics

Comparative Map Data

Dnajb3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	96,243,345 - 96,244,358 (-)	NCBI		GRCr8
mRatBN7.2	9	88,795,542 - 88,796,555 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	88,795,488 - 88,796,560 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	97,219,362 - 97,220,375 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	102,355,554 - 102,356,567 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	100,723,739 - 100,724,752 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	95,289,918 - 95,290,931 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	95,289,918 - 95,290,931 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	94,977,133 - 94,978,146 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	87,085,458 - 87,086,471 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	86,356,834 - 86,357,847 (-)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

DNAJB3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	233,742,750 - 233,743,998 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	233,743,188 - 233,743,916 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p14 Ensembl	2	233,742,750 - 233,744,015 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	234,651,396 - 234,652,644 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	234,316,135 - 234,317,400 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	228,372,015 - 228,373,280 (-)	NCBI		Celera
Cytogenetic Map	2	q37.1	NCBI
HuRef	2	226,451,239 - 226,452,504 (-)	NCBI		HuRef
CHM1_1	2	234,657,210 - 234,658,475 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	234,231,381 - 234,232,629 (-)	NCBI		T2T-CHM13v2.0

Dnajb3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	88,132,454 - 88,133,470 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	88,132,454 - 88,133,504 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	88,204,732 - 88,205,748 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	88,204,732 - 88,205,782 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	90,101,307 - 90,102,323 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	90,035,906 - 90,036,919 (-)	NCBI		MGSCv36	mm8
Celera	1	91,165,798 - 91,166,814 (-)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	44.55	NCBI

Dnajb3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955453	2,399,155 - 2,400,158 (+)	NCBI	ChiLan1.0	ChiLan1.0

DNAJB3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	45,143,010 - 45,144,366 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	45,640,030 - 45,641,372 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	45,489,849 - 45,491,191 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	45,490,404 - 45,491,120 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	45,382,741 - 45,384,083 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	45,190,977 - 45,192,321 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	45,419,905 - 45,421,247 (-)	NCBI		UU_Cfam_GSD_1.0

Dnajb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	187,307,840 - 187,309,209 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936525	3,630,584 - 3,631,530 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJB3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	134,027,252 - 134,028,266 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	148,140,831 - 148,143,655 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAJB3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666040	79,727,777 - 79,728,182 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Dnajb3
2 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	123
Count of miRNA genes:	105
Interacting mature miRNAs:	113
Transcripts:	ENSRNOT00000025300
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	77813894	101597663	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	77813894	111552878	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	79271511	91616855	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	9	79271511	91616855	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	79271511	91616855	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	79271511	102910209	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	86369631	92058970	Rat

Markers in Region

RH130767

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	88,795,599 - 88,795,779 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	95,289,976 - 95,290,155	NCBI	Rnor6.0
Rnor_5.0	9	94,977,191 - 94,977,370	UniSTS	Rnor5.0
RGSC_v3.4	9	87,085,516 - 87,085,695	UniSTS	RGSC3.4
Celera	9	86,356,892 - 86,357,071	UniSTS
Cytogenetic Map	9	q35	UniSTS
Cytogenetic Map	9	q35-q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		4	4		4			18	16	27
Low	1	43	43	28	18	28	4	5	56	19	14	11	4
Below cutoff			9	8	1	8	3	5					3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000025300 ⟹ ENSRNOP00000024845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	88,795,488 - 88,796,560 (-)	Ensembl
Rnor_6.0 Ensembl	9	95,289,918 - 95,290,931 (-)	Ensembl

RefSeq Acc Id:

NM_001109396 ⟹ NP_001102866

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,243,345 - 96,244,358 (-)	NCBI
mRatBN7.2	9	88,795,542 - 88,796,555 (-)	NCBI
Rnor_6.0	9	95,289,918 - 95,290,931 (-)	NCBI
Rnor_5.0	9	94,977,133 - 94,978,146 (-)	NCBI
RGSC_v3.4	9	87,085,458 - 87,086,471 (-)	RGD
Celera	9	86,356,834 - 86,357,847 (-)	RGD

Sequence:

show sequence

GCTGGCCGGTAGCGGGCGTTCAGCAGCTGCCACCAGCGCTCCAGCGCCGAGGCCGCGGGCCGGC
CAGCCGCCATGGTGGACTACTACGAGGTGCTGGGCGTGCCGCGGCAGGCCTCGGCTGAGGCCAT
CCGCAAGGCGTACCGCAAGCTTGCGCTCAAGTGGCACCCGGACAAGAACCCCGAGCACAAGGAG
GAGGCCGAGAGGCGGTTCAAGCAGGTGGCGCAGGCCTACGAGGTCTTATCGGACGCCCGCAAGC
GCGAGGTGTATGACCGCTGCGGCGAGGTGGGCGAGGTGGGCGGAGGCGGCGCGGCGGGCAGCCC
GTTCCACGATGCCTTCCAGTATGTCTTCTCCTTCCGAGACCCCGCCGAGGTCTTCAGGGAGTTC
TTCGGGGGGCACGACCCTTTTTCCTTCGACTTCTTCGGAGACCCGCTTGAGAACTTTTTCGGCG
ATCGGAGGAGCACCCGGGGAAGCAGAAGCCGAGGGTCCGTACCCTTCTCTACCTCCTTTACCGA
ATTCCCAGGGTTTGGGGGCGGCTTCGCTTCGTTAGATACTGGATTCACATCCTTCGGTTCTCCG
GGAAACTCAGGCCTTTCCTCTTTCTCCATGTCCTGCGGCGGTGGGGCGGCAGGCAACTACAAGT
CGGTGTCAACTTCCACCGAAATAATCAATGGCAAAAAAATCACCACCAAGAGAATCGTTGAGAA
TGGCCAGGAAAGGGTGGAAGTGGAAGAAGATGGAGAGTTAAAATCCCTGATAATTAATGGCAAG
GAGCAGCTGCTTCGCATTGATACCCAGTAAAGACGTAAAGTGTGATGTAAGGACTATCAGGACT
TTTTTTGTTTAAACGCGTTTTCAAGGGAGCTCTACTTTCAGAACAACTGTATTCAAGACATTAT
ATGCAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTCTTGGTCT
TTATGCCTGTTGTAAATATCTGTATGCCTTTGGCAGTTATTAAACGTAATCCTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102866	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92111	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024845
	ENSRNOP00000024845.1

RefSeq Acc Id:

NP_001102866 ⟸ NM_001109396

- UniProtKB:

D3ZAC5 (UniProtKB/TrEMBL), A6JQI3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVDYYEVLGVPRQASAEAIRKAYRKLALKWHPDKNPEHKEEAERRFKQVAQAYEVLSDARKREV
YDRCGEVGEVGGGGAAGSPFHDAFQYVFSFRDPAEVFREFFGGHDPFSFDFFGDPLENFFGDRR
STRGSRSRGSVPFSTSFTEFPGFGGGFASLDTGFTSFGSPGNSGLSSFSMSCGGGAAGNYKSVS
TSTEIINGKKITTKRIVENGQERVEVEEDGELKSLIINGKEQLLRIDTQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000024845 ⟸ ENSRNOT00000025300

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZAC5-F1-model_v2	AlphaFold	D3ZAC5	1-241	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696844

Promoter ID:

EPDNEW_R7369

Type:

initiation region

Name:

Dnajb3_1

Description:

DnaJ heat shock protein family member B3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	95,290,907 - 95,290,967	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1594215	AgrOrtholog
BioCyc Gene	G2FUF-26817	BioCyc
Ensembl Genes	ENSRNOG00000023172	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025300	ENTREZGENE
	ENSRNOT00000025300.4	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.110	UniProtKB/TrEMBL
InterPro	DnaJ_dom_sf	UniProtKB/TrEMBL
	DnaJ_N	UniProtKB/TrEMBL
	DNJB2/6-like	UniProtKB/TrEMBL
	Heat_shock_DnaJ_CS	UniProtKB/TrEMBL
KEGG Report	rno:680216	UniProtKB/TrEMBL
NCBI Gene	680216	ENTREZGENE
PANTHER	DNAJ HOMOLOG SUBFAMILY B MEMBER 2	UniProtKB/TrEMBL
	SIMILAR TO DNAJ HOMOLOG SUBFAMILY B MEMBER 6 (HEAT SHOCK PROTEIN J2) (HSJ-2) (MRJ) (MDJ4)	UniProtKB/TrEMBL
Pfam	DnaJ	UniProtKB/TrEMBL
PhenoGen	Dnajb3	PhenoGen
PRINTS	JDOMAIN	UniProtKB/TrEMBL
PROSITE	DNAJ_1	UniProtKB/TrEMBL
	DNAJ_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000023172	RatGTEx
SMART	DnaJ	UniProtKB/TrEMBL
Superfamily-SCOP	DnaJ_N	UniProtKB/TrEMBL
UniProt	A6JQI3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZAC5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-11-29	Dnajb3	DnaJ heat shock protein family (Hsp40) member B3	Dnajb3	DnaJ (Hsp40) homolog, subfamily B, member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Dnajb3	DnaJ (Hsp40) homolog, subfamily B, member 3	LOC680216	similar to DnaJ (Hsp40) homolog, subfamily B, member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC680216	similar to DnaJ (Hsp40) homolog, subfamily B, member 3	LOC683083	similar to DnaJ (Hsp40) homolog, subfamily B, member 3	Data merged from RGD:1591526	1643240	APPROVED
2006-11-20	LOC680216	similar to DnaJ (Hsp40) homolog, subfamily B, member 3			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC683083	similar to DnaJ (Hsp40) homolog, subfamily B, member 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar