Uba3-ps2 (ubiquitin-like modifier activating enzyme 3, pseudogene 2) - Rat Genome Database

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Gene: Uba3-ps2 (ubiquitin-like modifier activating enzyme 3, pseudogene 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Uba3-ps2
Name: ubiquitin-like modifier activating enzyme 3, pseudogene 2
RGD ID: 1584154
Description: Predicted to enable ATP binding activity and NEDD8 activating enzyme activity. Predicted to be involved in protein neddylation.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: LOC688812; similar to ubiquitin-activating enzyme E1C
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8127,131,175 - 7,132,567 (-)NCBIGRCr8
mRatBN7.2122,333,319 - 2,334,709 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl122,334,153 - 2,334,709 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0124,112,043 - 4,113,433 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl124,112,043 - 4,113,424 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0126,242,421 - 6,243,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4121,825,278 - 1,826,662 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera124,159,387 - 4,160,777 (-)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Variants

.
Variants in Uba3-ps2
12 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 3 9 26 29 29 10 13 10 6 65 37 14 9 26 19

Sequence


Ensembl Acc Id: ENSRNOT00000084052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl122,334,153 - 2,334,709 (-)Ensembl
Rnor_6.0 Ensembl124,112,043 - 4,113,424 (+)Ensembl
RefSeq Acc Id: XR_085983
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,333,319 - 2,334,709 (-)NCBI
Rnor_6.0124,112,043 - 4,113,433 (+)NCBI
Rnor_5.0126,242,421 - 6,243,809 (+)NCBI
RGSC_v3.4121,825,278 - 1,826,662 (+)RGD
Sequence:
Protein Sequences
Ensembl Protein ENSRNOP00000080181.1
Protein Domains
THIF-type NAD/FAD binding fold

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-20364 BioCyc
Ensembl Genes ENSRNOG00000054096 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084052.2 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro ThiF/MoeB/HesA UniProtKB/TrEMBL
  ThiF_NAD_FAD-bd UniProtKB/TrEMBL
  Ubiquitin-activating_enz UniProtKB/TrEMBL
NCBI Gene 688812 ENTREZGENE
PANTHER PTHR10953 UniProtKB/TrEMBL
  PTHR10953:SF6 UniProtKB/TrEMBL
Pfam ThiF UniProtKB/TrEMBL
PhenoGen Uba3-ps2 PhenoGen
RatGTEx ENSRNOG00000054096 RatGTEx
Superfamily-SCOP SSF69572 UniProtKB/TrEMBL
UniProt A0A8I5ZSI2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Uba3-ps2  ubiquitin-like modifier activating enzyme 3, pseudogene 2  LOC688812  similar to ubiquitin-activating enzyme E1C  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC688812  similar to ubiquitin-activating enzyme E1C      Symbol and Name status set to provisional 70820 PROVISIONAL