Ttc19 (tetratricopeptide repeat domain 19) - Rat Genome Database

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Gene: Ttc19 (tetratricopeptide repeat domain 19) Rattus norvegicus
Analyze
Symbol: Ttc19
Name: tetratricopeptide repeat domain 19
RGD ID: 1582808
Description: Predicted to be involved in mitochondrial respiratory chain complex III assembly. Predicted to be located in mitochondrion. Predicted to be part of respirasome. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 2. Orthologous to human TTC19 (tetratricopeptide repeat domain 19); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC287389; LOC691506; RGD1311797; similar to RIKEN cDNA 2810460C24; similar to Tetratricopeptide repeat protein 19 (TPR repeat protein 19); tetratricopeptide repeat protein 19; tetratricopeptide repeat protein 19, mitochondrial; TPR repeat protein 19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,469,043 - 47,496,923 (+)NCBIGRCr8
mRatBN7.21046,969,723 - 46,997,607 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,969,727 - 46,997,789 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,673,517 - 51,701,553 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,164,067 - 51,192,104 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,667,475 - 46,695,511 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,599,321 - 48,627,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,599,321 - 48,627,374 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,387,826 - 48,415,743 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,450,922 - 48,479,028 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1046,215,636 - 46,243,767 (+)NCBICelera
Cytogenetic Map10q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:21278747  


Genomics

Comparative Map Data
Ttc19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,469,043 - 47,496,923 (+)NCBIGRCr8
mRatBN7.21046,969,723 - 46,997,607 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,969,727 - 46,997,789 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,673,517 - 51,701,553 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,164,067 - 51,192,104 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,667,475 - 46,695,511 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,599,321 - 48,627,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,599,321 - 48,627,374 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,387,826 - 48,415,743 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,450,922 - 48,479,028 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1046,215,636 - 46,243,767 (+)NCBICelera
Cytogenetic Map10q23NCBI
TTC19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381715,999,824 - 16,045,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1715,999,784 - 16,045,015 (+)EnsemblGRCh38hg38GRCh38
GRCh371715,903,138 - 15,932,718 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,843,507 - 15,872,821 (+)NCBINCBI36Build 36hg18NCBI36
Build 341715,843,506 - 15,872,821NCBI
Celera1715,805,789 - 15,835,101 (+)NCBICelera
Cytogenetic Map17p12NCBI
HuRef1715,769,742 - 15,799,765 (+)NCBIHuRef
CHM1_11715,911,980 - 15,942,549 (+)NCBICHM1_1
T2T-CHM13v2.01715,902,040 - 15,947,641 (+)NCBIT2T-CHM13v2.0
Ttc19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,172,256 - 62,208,611 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,172,299 - 62,219,277 (+)EnsemblGRCm39 Ensembl
GRCm381162,281,429 - 62,331,879 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,281,473 - 62,328,451 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,094,975 - 62,129,943 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,097,675 - 62,131,443 (+)NCBIMGSCv36mm8
Celera1169,200,414 - 69,235,362 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.02NCBI
Ttc19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554671,381,625 - 1,405,014 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554671,381,105 - 1,405,509 (+)NCBIChiLan1.0ChiLan1.0
TTC19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,608,966 - 56,638,593 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11761,420,588 - 61,449,830 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01734,902,211 - 34,931,963 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TTC19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,825,526 - 39,868,002 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,839,889 - 39,908,515 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,985,469 - 40,014,326 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,948,928 - 39,977,795 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,948,932 - 40,018,382 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,921,180 - 39,950,035 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,866,440 - 39,895,303 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0540,057,720 - 40,086,571 (-)NCBIUU_Cfam_GSD_1.0
Ttc19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,245,246 - 59,288,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936821540,155 - 567,258 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936821524,183 - 566,953 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,393,224 - 59,418,995 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,393,217 - 59,418,821 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,477,277 - 62,493,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,632,017 - 15,662,857 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660595,298,505 - 5,328,623 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248774,381,368 - 4,404,083 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248774,380,164 - 4,404,104 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttc19
176 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:155
Count of miRNA genes:110
Interacting mature miRNAs:135
Transcripts:ENSRNOT00000057777
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat

Markers in Region
RH130301  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21046,971,895 - 46,972,107 (+)MAPPERmRatBN7.2
Rnor_6.01048,601,490 - 48,601,701NCBIRnor6.0
Rnor_5.01048,389,995 - 48,390,206UniSTSRnor5.0
RGSC_v3.41048,453,091 - 48,453,302UniSTSRGSC3.4
Celera1046,217,805 - 46,218,016UniSTS
RH 3.4 Map10540.5UniSTS
Cytogenetic Map10q23UniSTS
AI227962  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21046,997,397 - 46,997,571 (+)MAPPERmRatBN7.2
Rnor_6.01048,626,983 - 48,627,156NCBIRnor6.0
Rnor_5.01048,415,352 - 48,415,525UniSTSRnor5.0
RGSC_v3.41048,478,637 - 48,478,810UniSTSRGSC3.4
Celera1046,243,376 - 46,243,549UniSTS
RH 3.4 Map10545.3UniSTS
Cytogenetic Map10q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 37 21 16 21 8 11 70 35 35 9 8
Low 6 20 20 3 20 4 6 2
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000057777   ⟹   ENSRNOP00000054591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1046,969,727 - 46,997,789 (+)Ensembl
Rnor_6.0 Ensembl1048,599,321 - 48,627,374 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112760   ⟹   ENSRNOP00000083047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1046,969,727 - 46,997,789 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118989   ⟹   ENSRNOP00000091692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1046,969,727 - 46,997,789 (+)Ensembl
RefSeq Acc Id: NM_001109644   ⟹   NP_001103114
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,469,043 - 47,496,923 (+)NCBI
mRatBN7.21046,969,723 - 46,997,607 (+)NCBI
Rnor_6.01048,599,321 - 48,627,374 (+)NCBI
Rnor_5.01048,387,826 - 48,415,743 (+)NCBI
RGSC_v3.41048,450,922 - 48,479,028 (+)RGD
Celera1046,215,636 - 46,243,767 (+)RGD
Sequence:
RefSeq Acc Id: NM_001415772   ⟹   NP_001402701
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,469,043 - 47,496,923 (+)NCBI
mRatBN7.21046,969,723 - 46,997,607 (+)NCBI
RefSeq Acc Id: XM_039086898   ⟹   XP_038942826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,469,083 - 47,491,603 (+)NCBI
mRatBN7.21046,969,729 - 46,988,865 (+)NCBI
RefSeq Acc Id: XM_039086899   ⟹   XP_038942827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,469,083 - 47,491,603 (+)NCBI
mRatBN7.21046,969,729 - 46,988,865 (+)NCBI
RefSeq Acc Id: XM_063269901   ⟹   XP_063125971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,469,083 - 47,493,521 (+)NCBI
RefSeq Acc Id: NP_001103114   ⟸   NM_001109644
- Peptide Label: isoform 2
- UniProtKB: A0A8I6ACK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000054591   ⟸   ENSRNOT00000057777
RefSeq Acc Id: XP_038942826   ⟸   XM_039086898
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038942827   ⟸   XM_039086899
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000083047   ⟸   ENSRNOT00000112760
RefSeq Acc Id: ENSRNOP00000091692   ⟸   ENSRNOT00000118989
RefSeq Acc Id: NP_001402701   ⟸   NM_001415772
- Peptide Label: isoform 1
- UniProtKB: D4A6D7 (UniProtKB/Swiss-Prot),   D4A3Z0 (UniProtKB/Swiss-Prot),   A0A8I6ACK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125971   ⟸   XM_063269901
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A6D7-F1-model_v2 AlphaFold D4A6D7 1-365 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697271
Promoter ID:EPDNEW_R7796
Type:initiation region
Name:Ttc19_1
Description:tetratricopeptide repeat domain 19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01048,599,317 - 48,599,377EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1582808 AgrOrtholog
BioCyc Gene G2FUF-24777 BioCyc
Ensembl Genes ENSRNOG00000002977 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055032537 UniProtKB/Swiss-Prot
  ENSRNOG00060029885 UniProtKB/Swiss-Prot
  ENSRNOG00065007941 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000057777 ENTREZGENE
  ENSRNOT00000057777.3 UniProtKB/Swiss-Prot
  ENSRNOT00000112760 ENTREZGENE
  ENSRNOT00000112760.1 UniProtKB/Swiss-Prot
  ENSRNOT00000118989.1 UniProtKB/TrEMBL
  ENSRNOT00055056238 UniProtKB/Swiss-Prot
  ENSRNOT00060051965 UniProtKB/Swiss-Prot
  ENSRNOT00065012531 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TTC19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:691506 UniProtKB/Swiss-Prot
NCBI Gene 691506 ENTREZGENE
PANTHER PTHR13143 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 19, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TPR_10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ttc19 PhenoGen
PROSITE TPR_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002977 RatGTEx
  ENSRNOG00055032537 RatGTEx
  ENSRNOG00060029885 RatGTEx
  ENSRNOG00065007941 RatGTEx
SMART TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6ACK4 ENTREZGENE, UniProtKB/TrEMBL
  D4A3Z0 ENTREZGENE
  D4A6D7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary D4A3Z0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-15 Ttc19  tetratricopeptide repeat domain 19  RGD1311797  similar to RIKEN cDNA 2810460C24   Data merged from RGD:1311797 1643240 APPROVED
2008-07-08 Ttc19  tetratricopeptide repeat domain 19  LOC687312  similar to Tetratricopeptide repeat protein 19 (TPR repeat protein 19)  Data merged from RGD:1586585 1643240 APPROVED
2008-04-30 RGD1311797  similar to RIKEN cDNA 2810460C24   RGD1311797_predicted  similar to RIKEN cDNA 2810460C24 (predicted)  'predicted' is removed 2292626 APPROVED
2008-03-06 Ttc19  tetratricopeptide repeat domain 19  LOC691506  similar to Tetratricopeptide repeat protein 19 (TPR repeat protein 19)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC691506  similar to Tetratricopeptide repeat protein 19 (TPR repeat protein 19)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687312  similar to Tetratricopeptide repeat protein 19 (TPR repeat protein 19)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1311797_predicted  similar to RIKEN cDNA 2810460C24 (predicted)  LOC287389_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC287389_predicted  similar to RIKEN cDNA 2810460C24 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL