Ttc19 (tetratricopeptide repeat domain 19)

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Gene: Ttc19 (tetratricopeptide repeat domain 19) Ictidomys tridecemlineatus

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Symbol:

Ttc19

Name:

tetratricopeptide repeat domain 19

RGD ID:

12636183

Description:

INVOLVED IN mitochondrial respiratory chain complex III assembly (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); infertility (ortholog); FOUND IN mitochondrial inner membrane (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tetratricopeptide repeat domain 19, transcript variant X1; tetratricopeptide repeat domain 19, transcript variant X10; tetratricopeptide repeat domain 19, transcript variant X11; tetratricopeptide repeat protein 19, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	59,245,246 - 59,288,687 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936821	540,155 - 567,258 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936821	524,183 - 566,953 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

infertility (ISO)

mitochondrial complex III deficiency nuclear type 1 (ISO)

mitochondrial complex III deficiency nuclear type 2 (ISO)

mitochondrial metabolism disease (ISO)

nervous system disease (ISO)

neurodegenerative disease (ISO)

Neurologic Gait Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial respiratory chain complex III assembly (IEA)

Cellular Component

mitochondrial inner membrane (IEA)

mitochondrion (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Ttc19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	59,245,246 - 59,288,687 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936821	540,155 - 567,258 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936821	524,183 - 566,953 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC19
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	15,999,824 - 16,045,015 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	15,999,784 - 16,045,015 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	15,903,138 - 15,932,718 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	15,843,507 - 15,872,821 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	15,843,506 - 15,872,821	NCBI
Celera	17	15,805,789 - 15,835,101 (+)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI
HuRef	17	15,769,742 - 15,799,765 (+)	NCBI		HuRef
CHM1_1	17	15,911,980 - 15,942,549 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	15,902,040 - 15,947,641 (+)	NCBI		T2T-CHM13v2.0

Ttc19
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	62,172,256 - 62,208,611 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	62,172,299 - 62,219,277 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	62,281,429 - 62,331,879 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	62,281,473 - 62,328,451 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	62,094,975 - 62,129,943 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	62,097,675 - 62,131,443 (+)	NCBI		MGSCv36	mm8
Celera	11	69,200,414 - 69,235,362 (+)	NCBI		Celera
Cytogenetic Map	11	B2	NCBI
cM Map	11	38.02	NCBI

Ttc19
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	47,469,043 - 47,496,923 (+)	NCBI		GRCr8
mRatBN7.2	10	46,969,723 - 46,997,607 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	46,969,727 - 46,997,789 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	51,673,517 - 51,701,553 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	51,164,067 - 51,192,104 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	46,667,475 - 46,695,511 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	48,599,321 - 48,627,374 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	48,599,321 - 48,627,374 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	48,387,826 - 48,415,743 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	48,450,922 - 48,479,028 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	46,215,636 - 46,243,767 (+)	NCBI		Celera
Cytogenetic Map	10	q23	NCBI

Ttc19
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	1,381,625 - 1,405,014 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	1,381,105 - 1,405,509 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTC19
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	56,608,966 - 56,638,593 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	61,420,588 - 61,449,830 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	34,902,211 - 34,931,963 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

TTC19
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	39,825,526 - 39,868,002 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	39,839,889 - 39,908,515 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	39,985,469 - 40,014,326 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	39,948,928 - 39,977,795 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	39,948,932 - 40,018,382 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	39,921,180 - 39,950,035 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	39,866,440 - 39,895,303 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	40,057,720 - 40,086,571 (-)	NCBI		UU_Cfam_GSD_1.0

TTC19
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	59,393,224 - 59,418,995 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	59,393,217 - 59,418,821 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	62,477,277 - 62,493,181 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTC19
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	15,632,017 - 15,662,857 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666059	5,298,505 - 5,328,623 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttc19
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624877	4,381,368 - 4,404,083 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624877	4,380,164 - 4,404,104 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005340819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001230241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001230242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002482950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002482951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002482952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002482953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002482954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002482955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000004269 ⟹ ENSSTOP00000003834

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936821	540,155 - 567,258 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000031538 ⟹ ENSSTOP00000030370

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936821	540,155 - 567,258 (-)	Ensembl

RefSeq Acc Id:

XM_005340819 ⟹ XP_005340876

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,251 - 59,273,250 (+)	NCBI
SpeTri2.0	NW_004936821	538,954 - 566,953 (-)	NCBI

Sequence:

show sequence

GCGCTCGCCTGGTTCTCGAGGCCTTCTGCGGCAGATGCGGAGGAACAGCAGGGAGCGGGCGGGG
CCGCCGCTGAGGATGCGGCGGACGAGGCAGAGGCCGAGATCATTCAGCTGCTGAAGCGAGCCAA
GTTGAGCATCATGAAAGATGAACCAGAAGAGGCTGAGCTAATATTGCATGATGCTCTTCGCCTT
GCCTATCAGAGCGATAACCTGAAAGCCATCACTTACACTTATGATTTGATGGCCAACTTAGCGT
TTATACGGGGCCAACTAGAAAATGCAGAACAACTTTTTAAAGCAACAATGAGTTATCTGCTTGG
AGGGGGCATGAAGCAGGAAGACAATGCAATAATTGAAATCTCCCTAAAACTGGCCAGTATCTAT
GCTGCTCAGAATAGACAAGAATTTGCTCTCGCTGGCTATGAATTCTGCATTTCAACTTTAGAGG
AAAAAATTGAACGAGAAAAGGAATTATCAGAAGATGTTATGTCAGCGGAAGAAAAAGCCAATAC
CCACCTCCTTCTGGGCATGTGCTTAGACTCCTGTGCACGCTACCTTCTGTTCTCCAAGCAGCCA
TCACAGGCACAAAGGATGTATGAAAAAGCTCTGCAGATTTCTGAAGAAATACAAGGAGAAAGAC
ACCCACAGACCATTGTGCTCATGAGTGACCTGGCTACTACTCTGGACGCACAGGGCCACTTTGA
TGAGGCCTATATTTATATGCAAAGGGCATCAGATCTGGCAAGACAGATAAATCATCCTGAGCTG
CACATGGTACTCAGTAACCTAGCTGCAATTTTGATACACAGAGAACGATATACACAAGCAGAAG
AGATCTACCAGGAAGCACTGAAGCAAGCAGAGATGAAAAGAGATGAGGTTTCTGTACAGCACAT
CAGGGAAGAATTGGCTGAGCTGTCAAGAAAAAGTAGATCTTTGACTTAATATTATCAAGTGTTA
AACCCATTTTTTTTTTTTTTGTAGGGAGGGTAGTTTCTAGTGGCCTAAAGGAATAACTATTATT
CTAGTGTCTGTGGCACCCAAATCAATGGTGTAAATTTTCTGTTCTTGATATTCAGGTTTCCTCA
ACTTAGCCTTGGTGAAGGACAAGTTGTACATACTGCCACATTTGTTTTTAAAGGAAAAACAACT
TTCACCCTTCACTAATTATGACCTCTAAGGATTGATGTCAAATGATGCTTTCCATTGTATTATA
TGGATAGGTGCTGTCCATGCTGGTCTAAGTGTAATTATAGATTAAGATGGGCTACTTTTCCTCT
GGGTTGTGGGTGTGGGGGTCTGGTAATTATGCCTAACATCGCTACCGAAAGATTTTTGGTTCAC
TGATTTGCTGCCCTTTCTTCTTTTACTTTGTCAATATCTGGCAGACCAGAGCTACTCATGGCAA
AGGGAAATTATGGTGAGTTGTTTCTATTACCTTTCATGAAGCACAGTGGGATTTAACACACAGA
GGAGGAAAAGTGTTATATTAGTTTGTCTGTACCCAGCATGAAGTTTTAAAATGGGAATTAGGCA
ATTGAAAGTGTAGTAGCCTTTTGGTCATAAATAAAAGTGAACTATTTATCTGGTTATATGTAAC
TATTAATGGTTGGGTGGAAGAATGATGGAACCTCTTTCTTGCCAGTGGTATCCTGGAGCATCTG
ACATTTTTTGCAACTGTGAGGTCACAAAACTGAGTCATCTGAGATCCTCTTTAAAGCAATGCCT
GGGCTGTACCCTAGACCTGACTAGAATATGGCCCTACCAATGTAGATTTTAAAATTCCCAACCT
TGATTCTACTTAGTATCCTCTTCTGTAACATGAGGAAAGAATGAGATTCTTAGCCATGGGAGAA
AGTATCTGGTCAGATGACTTTAAATGAGTATACTGCTGTGTTGAAAGAGCTTTATTGCCCTGCC
TCAAAGTATGTAAACACAAGATACATAGATGGATTTCCTTACCTCAGCAGACTTGCAAAAAGCC
ATTTGTTTAGGGGGAAGGATAGTTTTTCTAGGTGCCATTAAGGAACACTGATATTGTTGATATG
CCTTTGTGAGTGGGGTGTGAGTGGAATTGGTAAACAGATATTTTGGGTTCATATGTATACACTG
GAAGTATCTTTTCATAATAAACTATACAACAATA

hide sequence

RefSeq Acc Id:

XR_001230242

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI
SpeTri2.0	NW_004936821	527,337 - 566,950 (-)	NCBI

Sequence:

show sequence

CTCGCCTGGTTCTCGAGGCCTTCTGCGGCAGATGCGGAGGAACAGCAGGGAGCGGGCGGGGCCG
CCGCTGAGGATGCGGCGGACGAGGCAGAGGCCGAGATCATTCAGCTGCTGAAGCGAGCCAAGTT
GAGCATCATGAAAGATGAACCAGAAGAGGCTGAGCTAATATTGCATGATGCTCTTCGCCTTGCC
TATCAGAGCGATAACCTGAAAGCCATCACTTACACTTATGATTTGATGGCCAACTTAGCGTTTA
TACGGGGCCAACTAGAAAATGCAGAACAACTTTTTAAAGCAACAATGAGTTATCTGCTTGGAGG
GGGCATGAAGCAGGAAGACAATGCAATAATTGAAATCTCCCTAAAACTGGCCAGTATCTATGCT
GCTCAGAATAGACAAGAATTTGCTCTCGCTGGCTATGAATTCTGCATTTCAACTTTAGAGGAAA
AAATTGAACGAGAAAAGGAATTATCAGAAGATGTTATGTCAGCGGAAGAAAAAGCCAATACCCA
CCTCCTTCTGGGCATGTGCTTAGACTCCTGTGCACGCTACCTTCTGTTCTCCAAGCAGCCATCA
CAGGCACAAAGGATGTATGAAAAAGCTCTGCAGATTTCTGAAGAAATACAAGGAGAAAGACACC
CACAGACCATTGTGCTCATGAGTGACCTGGCTACTACTCTGGACGCACAGGGCCACTTTGATGA
GGCCTATATTTATATGCAAAGGGCATCAGATCTGGCAAGACAGATAAATCATCCTGAGCTGCAC
ATGGTACTCAGTAACCTAGCTGCAATTTTGATACACAGAGAACGATATACACAAGCAGAAGAGA
TCTACCAGGAAGCACTGAAGCAAGCAGAGATGAAAAGAGATGAGGTTTCTGTACAGCACATCAG
GGAAGAATTGGCTGAGCTGTCAAGAAAAAACCAGAGCTACTCATGGCAAAGGGAAATTATGTGA
GAGCTTTTGCTTGAAGATAACAGAAGAAAATAAACCTAAAAACTGAAATACTGCTGAACTTCAG
GGTTAATGAAAGAAATCCCACTTACCCATATCAGAGTCACCTCCACCAGAAGAGTTCAACTTAC
GAAAAATCTCCTGCTTCTTT

hide sequence

RefSeq Acc Id:

XR_002482950

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,284,553 (+)	NCBI
SpeTri2.0	NW_004936821	528,320 - 566,950 (-)	NCBI

Sequence:

show sequence

CTCGCCTGGTTCTCGAGGCCTTCTGCGGCAGATGCGGAGGAACAGCAGGGAGCGGGCGGGGCCG
CCGCTGAGGATGCGGCGGACGAGGCAGAGGCCGAGATCATTCAGCTGCTGAAGCGAGCCAAGTT
GAGCATCATGAAAGATGAACCAGAAGAGGCTGAGCTAATATTGCATGATGCTCTTCGCCTTGCC
TATCAGAGCGATAACCTGAAAGCCATCACTTACACTTATGATTTGATGGCCAACTTAGCGTTTA
TACGGGGCCAACTAGAAAATGCAGAACAACTTTTTAAAGCAACAATGAGTTATCTGCTTGGAGG
GGGCATGAAGCAGGAAGACAATGCAATAATTGAAATCTCCCTAAAACTGGCCAGTATCTATGCT
GCTCAGAATAGACAAGAATTTGCTCTCGCTGGCTATGAATTCTGCATTTCAACTTTAGAGGAAA
AAATTGAACGAGAAAAGGAATTATCAGAAGATGTTATGTCAGCGGAAGAAAAAGCCAATACCCA
CCTCCTTCTGGGCATGTGCTTAGACTCCTGTGCACGCTACCTTCTGTTCTCCAAGCAGCCATCA
CAGGCACAAAGGATGTATGAAAAAGCTCTGCAGATTTCTGAAGAAATACAAGGAGAAAGACACC
CACAGACCATTGTGCTCATGAGTGACCTGGCTACTACTCTGGACGCACAGGGCCACTTTGATGA
GGCCTATATTTATATGCAAAGGGCATCAGATCTGGCAAGACAGATAAATCATCCTGAGCTGCAC
ATGGTACTCAGTAACCTAGCTGCAATTTTGATACACAGAGAACGATATACACAAGCAGAAGAGA
TCTACCAGGAAGCACTGAAGCAAGCAGAGATGAAAAGAGATGAGGTTTCTGTACAGCACATCAG
GGAAGAATTGGCTGAGCTGTCAAGAAAAAACCAGAGCTACTCATGGCAAAGGGAAATTATGTGA
GAGCTTTTGCTTGAAGATAACAGAAGAAAATAAACCTAAAAACTGAAATACTGCTGAACTTCAG
ATGTGCCTGGAATAATGCTTCTCCAGTAGCAGCAGCAGCAGCACTACTTTCTAGATGATGTGAT
CCATATGGCTTAAGCTTACACTGTGCCTGTCGTTTTTTCTTACAATTGGAAGTCACTTTTATTA
AAAAACATGTATGCTTCTGTCATGATAATGTACAGGGGGCAAGACAAAGACTACAGGGTCAAGT
GGAGACCATACCAAGGTGGAACAGTTCCCAACTGGCTGCTCTGAGATCTACATCTCCATGCTTT
GACAGGTTAATCTTTGAATTCTGACAGGATTTCAACATGAAGGTAGTTGGTGACATTTGAGAAG
CTATAAATAACAGATGAGACTATTGAAGCTTTGAGATAGAAAACTGTAATGATAATATTAAAAG
GGGGATATGGTACCTATAGGGCTGACAGTAGTTCTGGTTGGCATTATCTTTGAGATGATTTGTT
GCCATTAAAAAAAAAAAGAATCTAATAATTAAAAGCCAGGATAAATTCACATGGAAGTGATATT
GGGCTCATCCTTTTTTCTCTTTGACATTCAACGGTTAATCACAAAGTGAGACAGATCCAAACAC
ACATACACCTGGCAGTTCACAGTTCAGAGCCAACAGTTTCCTTTCTTTTGGCAGTGTCAGGAGA
CCGGTAGATGGTAGATGGCAGAAACAGAGCAAACGGAGGTCTATACAGATTCTACCACAGGATG
GAAATGACGGATAAGTAAGACTGGGTGATAGTACAAGTGAGCGTGCTGCGTGACCAAGTGCAGG
AGGGTTCTGATGAATGCATGCACATCAGCCCAAAGGAAAGTTCTGCCATAGAGTTTCATTGGAT
ATTTAACCACAATCTGGCTAAGGATGCTGTGAGTATAGAACTGTTAGAAGCCTGTTAGTACATC
ACTGGAAGCATAGACTCTGGAGTTGGAATGCCTGAGTTTAAAACCACA

hide sequence

RefSeq Acc Id:

XR_002482951

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,284,553 (+)	NCBI
SpeTri2.0	NW_004936821	528,320 - 566,950 (-)	NCBI

Sequence:

show sequence

CTCGCCTGGTTCTCGAGGCCTTCTGCGGCAGATGCGGAGGAACAGCAGGGAGCGGGCGGGGCCG
CCGCTGAGGATGCGGCGGACGAGGCAGAGGCCGAGATCATTCAGCTGCTGAAGCGAGCCAAGTT
GAGCATCATGAAAGATGAACCAGAAGAGGCTGAGCTAATATTGCATGATGCTCTTCGCCTTGCC
TATCAGAGCGATAACCTGAAAGCCATCACTTACACTTATGATTTGATGGCCAACTTAGCGTTTA
TACGGGGCCAACTAGAAAATGCAGAACAACTTTTTAAAGCAACAATGAGTTATCTGCTTGGAGG
GGGCATGAAGCAGGAAGACAATGCAATAATTGAAATCTCCCTAAAACTGGCCAGTATCTATGCT
GCTCAGAATAGACAAGAATTTGCTCTCGCTGGCTATGAATTCTGCATTTCAACTTTAGAGGAAA
AAATTGAACGAGAAAAGGAATTATCAGAAGATGTTATGTCAGCGGAAGAAAAAGCCAATACCCA
CCTCCTTCTGGGCATGTGCTTAGACTCCTGTGCACGCTACCTTCTGTTCTCCAAGCAGCCATCA
CAGGCACAAAGGATGTATGAAAAAGCTCTGCAGATTTCTGAAGAAATACAAGGAGAAAGACACC
CACAGACCATTGTGCTCATGAGTGACCTGGCTACTACTCTGGACGCACAGGGCCACTTTGATGA
GGCCTATATTTATATGCAAAGGGCATCAGATCTGGCAAGACAGATAAATCATCCTGAGCTGCAC
ATGGTACTCAGTAACCTAGCTGCAATTTTGATACACAGAGAACGATATACACAAGCAGAAGAGA
TCTACCAGGAAGCACTGAAGCAAGCAGAGATGAAAAGAGATGAGGTTTCTGTACAGCACATCAG
GGAAGAATTGGCTGAGCTGTCAAGAAAAAACCAGAGCTACTCATGGCAAAGGGAAATTATGTGA
GAGCTTTTGCTTGAAGATAACAGAAGAAAATAAACCTAAAAACTGAAATACTGCTGAACTTCAG
GAGGTAAAAAATTATCTAATCCAACTTTTTTATCTGTGTGTACATTAAGATGTGCCTGGAATAA
TGCTTCTCCAGTAGCAGCAGCAGCAGCACTACTTTCTAGATGATGTGATCCATATGGCTTAAGC
TTACACTGTGCCTGTCGTTTTTTCTTACAATTGGAAGTCACTTTTATTAAAAAACATGTATGCT
TCTGTCATGATAATGTACAGGGGGCAAGACAAAGACTACAGGGTCAAGTGGAGACCATACCAAG
GTGGAACAGTTCCCAACTGGCTGCTCTGAGATCTACATCTCCATGCTTTGACAGGTTAATCTTT
GAATTCTGACAGGATTTCAACATGAAGGTAGTTGGTGACATTTGAGAAGCTATAAATAACAGAT
GAGACTATTGAAGCTTTGAGATAGAAAACTGTAATGATAATATTAAAAGGGGGATATGGTACCT
ATAGGGCTGACAGTAGTTCTGGTTGGCATTATCTTTGAGATGATTTGTTGCCATTAAAAAAAAA
AAGAATCTAATAATTAAAAGCCAGGATAAATTCACATGGAAGTGATATTGGGCTCATCCTTTTT
TCTCTTTGACATTCAACGGTTAATCACAAAGTGAGACAGATCCAAACACACATACACCTGGCAG
TTCACAGTTCAGAGCCAACAGTTTCCTTTCTTTTGGCAGTGTCAGGAGACCGGTAGATGGTAGA
TGGCAGAAACAGAGCAAACGGAGGTCTATACAGATTCTACCACAGGATGGAAATGACGGATAAG
TAAGACTGGGTGATAGTACAAGTGAGCGTGCTGCGTGACCAAGTGCAGGAGGGTTCTGATGAAT
GCATGCACATCAGCCCAAAGGAAAGTTCTGCCATAGAGTTTCATTGGATATTTAACCACAATCT
GGCTAAGGATGCTGTGAGTATAGAACTGTTAGAAGCCTGTTAGTACATCACTGGAAGCATAGAC
TCTGGAGTTGGAATGCCTGAGTTTAAAACCACA

hide sequence

RefSeq Acc Id:

XR_002482952

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,284,553 (+)	NCBI
SpeTri2.0	NW_004936821	528,320 - 566,950 (-)	NCBI

Sequence:

show sequence

CTCGCCTGGTTCTCGAGGCCTTCTGCGGCAGATGCGGAGGAACAGCAGGGAGCGGGCGGGGCCG
CCGCTGAGGATGCGGCGGACGAGGCAGAGGCCGAGATCATTCAGCTGCTGAAGCGAGCCAAGTT
GAGCATCATGAAAGATGAACCAGAAGAGGCTGAGCTAATATTGCATGATGCTCTTCGCCTTGCC
TATCAGAGCGATAACCTGAAAGCCATCACTTACACTTATGATTTGATGGCCAACTTAGCGTTTA
TACGGGGCCAACTAGAAAATGCAGAACAACTTTTTAAAGCAACAATGAGTTATCTGCTTGGAGG
GGGCATGAAGCAGGAAGACAATGCAATAATTGAAATCTCCCTAAAACTGGCCAGTATCTATGCT
GCTCAGAATAGACAAGAATTTGCTCTCGCTGGCTATGAATTCTGCATTTCAACTTTAGAGGAAA
AAATTGAACGAGAAAAGGAATTATCAGAAGATGTTATGTCAGCGGAAGAAAAAGCCAATACCCA
CCTCCTTCTGGGCATGTGCTTAGACTCCTGTGCACGCTACCTTCTGTTCTCCAAGCAGCCATCA
CAGGCACAAAGGATGTATGAAAAAGCTCTGCAGATTTCTGAAGAAATACAAGGAGAAAGACACC
CACAGACCATTGTGCTCATGAGTGACCTGGCTACTACTCTGGACGCACAGGGCCACTTTGATGA
GGCCTATATTTATATGCAAAGGGCATCAGATCTGGCAAGACAGATAAATCATCCTGAGCTGCAC
ATGGTACTCAGTAACCTAGCTGCAATTTTGATACACAGAGAACGATATACACAAGCAGAAGAGA
TCTACCAGGAAGCACTGAAGCAAGCAGAGATGAAAAGAGATGAGGTTTCTGTACAGCACATCAG
GGAAGAATTGGCTGAGCTGTCAAGAAAAAACCAGAGCTACTCATGGCAAAGGGAAATTATGTGA
GAGCTTTTGCTTGAAGATAACAGAAGAAAATAAACCTAAAAACTGAAATACTGCTGAACTTCAG
GGGGCAAGACAAAGACTACAGGGTCAAGTGGAGACCATACCAAGGTGGAACAGTTCCCAACTGG
CTGCTCTGAGATCTACATCTCCATGCTTTGACAGGTTAATCTTTGAATTCTGACAGGATTTCAA
CATGAAGGTAGTTGGTGACATTTGAGAAGCTATAAATAACAGATGAGACTATTGAAGCTTTGAG
ATAGAAAACTGTAATGATAATATTAAAAGGGGGATATGGTACCTATAGGGCTGACAGTAGTTCT
GGTTGGCATTATCTTTGAGATGATTTGTTGCCATTAAAAAAAAAAAGAATCTAATAATTAAAAG
CCAGGATAAATTCACATGGAAGTGATATTGGGCTCATCCTTTTTTCTCTTTGACATTCAACGGT
TAATCACAAAGTGAGACAGATCCAAACACACATACACCTGGCAGTTCACAGTTCAGAGCCAACA
GTTTCCTTTCTTTTGGCAGTGTCAGGAGACCGGTAGATGGTAGATGGCAGAAACAGAGCAAACG
GAGGTCTATACAGATTCTACCACAGGATGGAAATGACGGATAAGTAAGACTGGGTGATAGTACA
AGTGAGCGTGCTGCGTGACCAAGTGCAGGAGGGTTCTGATGAATGCATGCACATCAGCCCAAAG
GAAAGTTCTGCCATAGAGTTTCATTGGATATTTAACCACAATCTGGCTAAGGATGCTGTGAGTA
TAGAACTGTTAGAAGCCTGTTAGTACATCACTGGAAGCATAGACTCTGGAGTTGGAATGCCTGA
GTTTAAAACCACA

hide sequence

RefSeq Acc Id:

XR_005726542

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,284,553 (+)	NCBI

RefSeq Acc Id:

XR_005726543

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,284,553 (+)	NCBI

RefSeq Acc Id:

XR_005726544

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726545

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726546

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726547

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726548

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726549

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726550

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726551

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726552

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726553

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,288,687 (+)	NCBI

RefSeq Acc Id:

XR_005726554

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,288,687 (+)	NCBI

RefSeq Acc Id:

XR_005726555

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,284,553 (+)	NCBI

RefSeq Acc Id:

XR_005726556

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,285,196 (+)	NCBI

RefSeq Acc Id:

XR_005726557

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,249 - 59,288,687 (+)	NCBI

RefSeq Acc Id:

XR_005726558

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	59,245,246 - 59,284,553 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005340876	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003834.3
	ENSSTOP00000030370.1
GenBank Protein	KAG3270226	(Get FASTA)	NCBI Sequence Viewer
	KAG3270227	(Get FASTA)	NCBI Sequence Viewer
	KAG3270228	(Get FASTA)	NCBI Sequence Viewer
	KAG3270229	(Get FASTA)	NCBI Sequence Viewer
	KAG3270230	(Get FASTA)	NCBI Sequence Viewer
	KAG3270231	(Get FASTA)	NCBI Sequence Viewer
	KAG3270232	(Get FASTA)	NCBI Sequence Viewer
	KAG3270233	(Get FASTA)	NCBI Sequence Viewer
	KAG3270234	(Get FASTA)	NCBI Sequence Viewer
	KAG3270235	(Get FASTA)	NCBI Sequence Viewer
	KAG3270236	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005340876 ⟸ XM_005340819

- UniProtKB:

I3M3X9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKDEPEEAELILHDALRLAYQSDNLKAITYTYDLMANLAFIRGQLENAEQLFKATMSYLLGGGM
KQEDNAIIEISLKLASIYAAQNRQEFALAGYEFCISTLEEKIEREKELSEDVMSAEEKANTHLL
LGMCLDSCARYLLFSKQPSQAQRMYEKALQISEEIQGERHPQTIVLMSDLATTLDAQGHFDEAY
IYMQRASDLARQINHPELHMVLSNLAAILIHRERYTQAEEIYQEALKQAEMKRDEVSVQHIREE
LAELSRKSRSLT

hide sequence

Ensembl Acc Id:

ENSSTOP00000003834 ⟸ ENSSTOT00000004269

Ensembl Acc Id:

ENSSTOP00000030370 ⟸ ENSSTOT00000031538

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000004245	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000004269.3	UniProtKB/TrEMBL
	ENSSTOT00000031538.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
	TTC19	UniProtKB/TrEMBL
NCBI Gene	Ttc19	ENTREZGENE
PANTHER	PTHR13143	UniProtKB/TrEMBL
	TETRATRICOPEPTIDE REPEAT PROTEIN 19, MITOCHONDRIAL	UniProtKB/TrEMBL
Pfam	TPR_10	UniProtKB/TrEMBL
	TPR_12	UniProtKB/TrEMBL
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A287D9Y5_ICTTR	UniProtKB/TrEMBL
	I3M3X9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM