Camta1 (calmodulin binding transcription activator 1) - Rat Genome Database

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Gene: Camta1 (calmodulin binding transcription activator 1) Rattus norvegicus
Analyze
Symbol: Camta1
Name: calmodulin binding transcription activator 1
RGD ID: 1562703
Description: Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in positive regulation of calcineurin-NFAT signaling cascade and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within neuromuscular process controlling balance. Predicted to be located in cytosol and nucleolus. Human ortholog(s) of this gene implicated in nonprogressive cerebellar ataxia with mental retardation. Orthologous to human CAMTA1 (calmodulin binding transcription activator 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calmodulin-binding transcription activator 1; MGC114278; similar to KIAA0833 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85166,791,639 - 167,639,502 (-)NCBIGRCr8
mRatBN7.25161,510,283 - 162,356,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5161,510,283 - 162,356,723 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5164,226,976 - 165,059,436 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05166,043,608 - 166,880,482 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05166,005,620 - 166,842,701 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05168,138,207 - 169,017,295 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5168,141,372 - 169,017,295 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05171,715,302 - 172,577,540 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45168,201,249 - 169,046,038 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5159,762,457 - 160,564,372 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (ISO)
cyclosporin A  (ISO)
doxorubicin  (EXP,ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenamidone  (ISO)
fenthion  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
L-methionine  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
Nor-9-carboxy-delta9-THC  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
permethrin  (EXP)
propanal  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (EXP)
tremolite asbestos  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:22715383   PMID:23853098   PMID:25049392   PMID:27402838  


Genomics

Comparative Map Data
Camta1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85166,791,639 - 167,639,502 (-)NCBIGRCr8
mRatBN7.25161,510,283 - 162,356,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5161,510,283 - 162,356,723 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5164,226,976 - 165,059,436 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05166,043,608 - 166,880,482 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05166,005,620 - 166,842,701 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05168,138,207 - 169,017,295 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5168,141,372 - 169,017,295 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05171,715,302 - 172,577,540 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45168,201,249 - 169,046,038 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5159,762,457 - 160,564,372 (-)NCBICelera
Cytogenetic Map5q36NCBI
CAMTA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,785,454 - 7,769,706 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,785,454 - 7,769,706 (+)EnsemblGRCh38hg38GRCh38
GRCh3716,845,514 - 7,829,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,767,971 - 7,752,351 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416,779,649 - 7,764,029NCBI
Celera15,960,132 - 6,937,492 (+)NCBICelera
Cytogenetic Map1p36.31-p36.23NCBI
HuRef15,994,058 - 6,978,211 (+)NCBIHuRef
CHM1_116,833,955 - 7,817,468 (+)NCBICHM1_1
T2T-CHM13v2.016,313,294 - 7,300,752 (+)NCBIT2T-CHM13v2.0
Camta1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394151,143,980 - 151,946,225 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4151,143,982 - 151,946,333 (-)EnsemblGRCm39 Ensembl
GRCm384151,059,523 - 151,861,768 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4150,917,322 - 151,861,876 (-)EnsemblGRCm38mm10GRCm38
MGSCv374150,433,633 - 151,235,866 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364149,903,324 - 150,705,551 (-)NCBIMGSCv36mm8
Celera4153,335,401 - 154,126,558 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map481.53NCBI
Camta1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554865,116,677 - 5,872,167 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554865,115,469 - 5,890,028 (-)NCBIChiLan1.0ChiLan1.0
CAMTA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,456,554 - 221,439,290 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11219,097,682 - 220,081,228 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,549,742 - 6,532,568 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,824,691 - 7,781,265 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,824,687 - 7,781,265 (+)Ensemblpanpan1.1panPan2
CAMTA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,566,136 - 61,429,092 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,580,334 - 61,426,251 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,590,405 - 61,437,844 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,798,180 - 61,645,946 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,798,188 - 61,645,946 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,796,944 - 61,645,198 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,662,147 - 61,509,651 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0561,065,157 - 61,913,319 (+)NCBIUU_Cfam_GSD_1.0
Camta1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505831,039,445 - 31,780,761 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,526,171 - 2,266,124 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,759,052 - 2,265,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMTA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,605,790 - 68,471,920 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,605,863 - 68,471,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,602,664 - 62,678,307 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAMTA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120123,985,812 - 124,957,522 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20123,985,755 - 124,116,124 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605428,020,760 - 28,999,369 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Camta1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248184,019,755 - 4,797,962 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Camta1
6015 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:577
Count of miRNA genes:265
Interacting mature miRNAs:351
Transcripts:ENSRNOT00000066120, ENSRNOT00000067481
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 87 86 55 25 55 6 214 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001195559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001195560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAHX01040931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01040932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01040933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01040934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01040947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01040954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01040966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01040974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC106025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF290446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF290447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066120   ⟹   ENSRNOP00000059056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5161,512,173 - 162,075,624 (-)Ensembl
Rnor_6.0 Ensembl5168,141,547 - 168,734,296 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000067481   ⟹   ENSRNOP00000063320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5162,323,172 - 162,330,197 (-)Ensembl
Rnor_6.0 Ensembl5168,947,202 - 169,017,295 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5161,510,283 - 162,356,723 (-)Ensembl
Rnor_6.0 Ensembl5168,141,372 - 169,017,260 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5168,985,141 - 168,985,830 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5168,947,216 - 169,017,295 (-)Ensembl
RefSeq Acc Id: NM_001195559   ⟹   NP_001182488
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,440 (-)NCBI
mRatBN7.25161,510,283 - 162,356,699 (-)NCBI
Rnor_6.05168,138,207 - 169,017,295 (-)NCBI
Rnor_5.05171,715,302 - 172,577,540 (-)NCBI
Celera5159,762,457 - 160,564,372 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001195560   ⟹   NP_001182489
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,568,644 - 167,639,440 (-)NCBI
mRatBN7.25162,285,896 - 162,356,699 (-)NCBI
Rnor_6.05168,947,200 - 169,017,295 (-)NCBI
Rnor_5.05171,715,302 - 172,577,540 (-)NCBI
Celera5160,520,457 - 160,564,372 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110436   ⟹   XP_038966364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
mRatBN7.25161,510,285 - 162,356,764 (-)NCBI
RefSeq Acc Id: XM_039110438   ⟹   XP_038966366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
mRatBN7.25161,513,589 - 162,356,766 (-)NCBI
RefSeq Acc Id: XM_039110444   ⟹   XP_038966372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
mRatBN7.25161,513,589 - 162,356,764 (-)NCBI
RefSeq Acc Id: XM_039110445   ⟹   XP_038966373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
mRatBN7.25161,513,589 - 162,356,766 (-)NCBI
RefSeq Acc Id: XM_063288086   ⟹   XP_063144156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,791,639 - 167,639,502 (-)NCBI
RefSeq Acc Id: XM_063288088   ⟹   XP_063144158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
RefSeq Acc Id: XM_063288089   ⟹   XP_063144159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 166,847,288 (-)NCBI
RefSeq Acc Id: XM_063288090   ⟹   XP_063144160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 166,847,301 (-)NCBI
RefSeq Acc Id: XM_063288091   ⟹   XP_063144161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,885,208 - 167,639,502 (-)NCBI
RefSeq Acc Id: XM_063288092   ⟹   XP_063144162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,885,208 - 167,639,502 (-)NCBI
RefSeq Acc Id: XR_005504502
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,555,750 - 167,639,501 (-)NCBI
mRatBN7.25162,272,997 - 162,356,755 (-)NCBI
RefSeq Acc Id: XR_010066426
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
RefSeq Acc Id: XR_010066427
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
RefSeq Acc Id: XR_010066428
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
RefSeq Acc Id: XR_010066429
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,498 (-)NCBI
RefSeq Acc Id: XR_010066430
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,495 (-)NCBI
RefSeq Acc Id: XR_010066431
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,489 (-)NCBI
RefSeq Acc Id: XR_010066432
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,489 (-)NCBI
RefSeq Acc Id: XR_010066433
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,606,994 (-)NCBI
RefSeq Acc Id: XR_010066434
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
RefSeq Acc Id: XR_010066435
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 167,639,502 (-)NCBI
RefSeq Acc Id: XR_010066436
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 166,876,455 (-)NCBI
RefSeq Acc Id: XR_010066437
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 166,847,288 (-)NCBI
RefSeq Acc Id: XR_010066438
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 166,847,089 (-)NCBI
RefSeq Acc Id: XR_010066439
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 166,867,225 (-)NCBI
RefSeq Acc Id: XR_010066440
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,793,101 - 166,847,288 (-)NCBI
RefSeq Acc Id: NP_001182488   ⟸   NM_001195559
- Peptide Label: isoform 1
- UniProtKB: A0A8I6G9L6 (UniProtKB/TrEMBL),   A6IUF2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001182489   ⟸   NM_001195560
- Peptide Label: isoform 2
- UniProtKB: Q3KQW8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063320   ⟸   ENSRNOT00000067481
Ensembl Acc Id: ENSRNOP00000059056   ⟸   ENSRNOT00000066120
RefSeq Acc Id: XP_038966364   ⟸   XM_039110436
- Peptide Label: isoform X1
- UniProtKB: A6IUF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966373   ⟸   XM_039110445
- Peptide Label: isoform X5
- UniProtKB: A6IUF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966366   ⟸   XM_039110438
- Peptide Label: isoform X3
- UniProtKB: A6IUF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966372   ⟸   XM_039110444
- Peptide Label: isoform X4
- UniProtKB: A6IUF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144156   ⟸   XM_063288086
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063144158   ⟸   XM_063288088
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144160   ⟸   XM_063288090
- Peptide Label: isoform X8
- UniProtKB: F1M4M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144159   ⟸   XM_063288089
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063144162   ⟸   XM_063288092
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063144161   ⟸   XM_063288091
- Peptide Label: isoform X9
Protein Domains
CG-1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M4M6-F1-model_v2 AlphaFold F1M4M6 1-1609 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694291
Promoter ID:EPDNEW_R4814
Type:multiple initiation site
Name:Camta1_1
Description:calmodulin binding transcription activator 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05169,017,308 - 169,017,368EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562703 AgrOrtholog
BioCyc Gene G2FUF-39042 BioCyc
Ensembl Genes ENSRNOG00000018602 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066120.4 UniProtKB/TrEMBL
  ENSRNOT00000067481.3 UniProtKB/TrEMBL
  ENSRNOT00000092887.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.190 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  CG-1_dom UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:362665 UniProtKB/TrEMBL
NCBI Gene 362665 ENTREZGENE
PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA UniProtKB/TrEMBL
  PTHR23335:SF11 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  CG-1 UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
PhenoGen Camta1 PhenoGen
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  CG_1 UniProtKB/TrEMBL
  PS50096 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018602 RatGTEx
SMART CG-1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A8I6G9L6 ENTREZGENE, UniProtKB/TrEMBL
  A6IUF2 ENTREZGENE, UniProtKB/TrEMBL
  F1M4M6 ENTREZGENE, UniProtKB/TrEMBL
  F7ENC1_RAT UniProtKB/TrEMBL
  Q3KQW8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-02-09 LOC362665  similar to KIAA0833 protein      Symbol and Name status set to provisional 70820 PROVISIONAL