Camta1 (calmodulin binding transcription activator 1) - Rat Genome Database

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Gene: Camta1 (calmodulin binding transcription activator 1) Heterocephalus glaber
Analyze
Symbol: Camta1
Name: calmodulin binding transcription activator 1
RGD ID: 18920817
Description: ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN neuromuscular process controlling balance (ortholog); positive regulation of calcineurin-NFAT signaling cascade (ortholog); positive regulation of protein dephosphorylation (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Developmental Disease (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calmodulin-binding transcription activator 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248184,019,755 - 4,797,962 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleolus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Camta1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248184,019,755 - 4,797,962 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CAMTA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,785,454 - 7,769,706 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,785,454 - 7,769,706 (+)EnsemblGRCh38hg38GRCh38
GRCh3716,845,514 - 7,829,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,767,971 - 7,752,351 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416,779,649 - 7,764,029NCBI
Celera15,960,132 - 6,937,492 (+)NCBICelera
Cytogenetic Map1p36.31-p36.23NCBI
HuRef15,994,058 - 6,978,211 (+)NCBIHuRef
CHM1_116,833,955 - 7,817,468 (+)NCBICHM1_1
T2T-CHM13v2.016,313,294 - 7,300,752 (+)NCBIT2T-CHM13v2.0
Camta1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394151,143,980 - 151,946,225 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4151,143,982 - 151,946,333 (-)EnsemblGRCm39 Ensembl
GRCm384151,059,523 - 151,861,768 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4150,917,322 - 151,861,876 (-)EnsemblGRCm38mm10GRCm38
MGSCv374150,433,633 - 151,235,866 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364149,903,324 - 150,705,551 (-)NCBIMGSCv36mm8
Celera4153,335,401 - 154,126,558 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map481.53NCBI
Camta1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85166,791,639 - 167,639,502 (-)NCBIGRCr8
mRatBN7.25161,510,283 - 162,356,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5161,510,283 - 162,356,723 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5164,226,976 - 165,059,436 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05166,043,608 - 166,880,482 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05166,005,620 - 166,842,701 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05168,138,207 - 169,017,295 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5168,141,372 - 169,017,295 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05171,715,302 - 172,577,540 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45168,201,249 - 169,046,038 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5159,762,457 - 160,564,372 (-)NCBICelera
Cytogenetic Map5q36NCBI
Camta1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554865,116,677 - 5,872,167 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554865,115,469 - 5,890,028 (-)NCBIChiLan1.0ChiLan1.0
CAMTA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,456,554 - 221,439,290 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11219,097,682 - 220,081,228 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,549,742 - 6,532,568 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,824,691 - 7,781,265 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,824,687 - 7,781,265 (+)Ensemblpanpan1.1panPan2
CAMTA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,566,136 - 61,429,092 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,580,334 - 61,426,251 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,590,405 - 61,437,844 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,798,180 - 61,645,946 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,798,188 - 61,645,946 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,796,944 - 61,645,198 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,662,147 - 61,509,651 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0561,065,157 - 61,913,319 (+)NCBIUU_Cfam_GSD_1.0
Camta1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505831,039,445 - 31,780,761 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,526,171 - 2,266,124 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,759,052 - 2,265,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMTA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,605,790 - 68,471,920 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,605,863 - 68,471,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,602,664 - 62,678,307 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAMTA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120123,985,812 - 124,957,522 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20123,985,755 - 124,116,124 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605428,020,760 - 28,999,369 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004863697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004863698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013065092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002389039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002389040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01079546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000006706   ⟹   ENSHGLP00000006624
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248184,019,755 - 4,096,326 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006707   ⟹   ENSHGLP00000006625
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248184,019,755 - 4,052,030 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006708   ⟹   ENSHGLP00000006626
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248184,024,226 - 4,797,962 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006709   ⟹   ENSHGLP00000006627
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248184,024,226 - 4,797,962 (-)Ensembl
RefSeq Acc Id: XM_004863697   ⟹   XP_004863754
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,118,909 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_004863698   ⟹   XP_004863755
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,723,899 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_013065092   ⟹   XP_012920546
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,091,628 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243595   ⟹   XP_021099254
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243596   ⟹   XP_021099255
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243597   ⟹   XP_021099256
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243598   ⟹   XP_021099257
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243599   ⟹   XP_021099258
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243600   ⟹   XP_021099259
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,797,965 (-)NCBI
RefSeq Acc Id: XM_021243602   ⟹   XP_021099261
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243603   ⟹   XP_021099262
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,028 (-)NCBI
RefSeq Acc Id: XM_021243604   ⟹   XP_021099263
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243605   ⟹   XP_021099264
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243606   ⟹   XP_021099265
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243607   ⟹   XP_021099266
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243608   ⟹   XP_021099267
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,074,467 (-)NCBI
RefSeq Acc Id: XM_021243609   ⟹   XP_021099268
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,345,737 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243611   ⟹   XP_021099270
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,693,343 - 4,798,029 (-)NCBI
RefSeq Acc Id: XM_021243612   ⟹   XP_021099271
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,021,045 - 4,798,029 (-)NCBI
RefSeq Acc Id: XR_002389039
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,693,346 - 4,798,029 (-)NCBI
RefSeq Acc Id: XR_002389040
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248184,707,746 - 4,798,029 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021099271   ⟸   XM_021243612
- Peptide Label: isoform X19
RefSeq Acc Id: XP_021099261   ⟸   XM_021243602
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021099265   ⟸   XM_021243606
- Peptide Label: isoform X11
RefSeq Acc Id: XP_021099266   ⟸   XM_021243607
- Peptide Label: isoform X12
RefSeq Acc Id: XP_021099263   ⟸   XM_021243604
- Peptide Label: isoform X9
RefSeq Acc Id: XP_021099264   ⟸   XM_021243605
- Peptide Label: isoform X10
RefSeq Acc Id: XP_021099256   ⟸   XM_021243597
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021099257   ⟸   XM_021243598
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021099258   ⟸   XM_021243599
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021099254   ⟸   XM_021243595
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021099255   ⟸   XM_021243596
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021099262   ⟸   XM_021243603
- Peptide Label: isoform X8
RefSeq Acc Id: XP_021099259   ⟸   XM_021243600
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021099267   ⟸   XM_021243608
- Peptide Label: isoform X14
RefSeq Acc Id: XP_012920546   ⟸   XM_013065092
- Peptide Label: isoform X13
RefSeq Acc Id: XP_004863754   ⟸   XM_004863697
- Peptide Label: isoform X16
RefSeq Acc Id: XP_021099268   ⟸   XM_021243609
- Peptide Label: isoform X15
RefSeq Acc Id: XP_021099270   ⟸   XM_021243611
- Peptide Label: isoform X17
RefSeq Acc Id: XP_004863755   ⟸   XM_004863698
- Peptide Label: isoform X18
RefSeq Acc Id: ENSHGLP00000006627   ⟸   ENSHGLT00000006709
RefSeq Acc Id: ENSHGLP00000006624   ⟸   ENSHGLT00000006706
RefSeq Acc Id: ENSHGLP00000006625   ⟸   ENSHGLT00000006707
RefSeq Acc Id: ENSHGLP00000006626   ⟸   ENSHGLT00000006708


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004844 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006707 ENTREZGENE
  ENSHGLT00000006708 ENTREZGENE
  ENSHGLT00000006709 ENTREZGENE
NCBI Gene Camta1 ENTREZGENE