Acta1-ps2 (actin, alpha 1, skeletal muscle, pseudogene 2) - Rat Genome Database

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Gene: Acta1-ps2 (actin, alpha 1, skeletal muscle, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Acta1-ps2
Name: actin, alpha 1, skeletal muscle, pseudogene 2
RGD ID: 1560901
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC367200; RGD1560901; similar to actin, alpha 1, skeletal muscle
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr897,828,483 - 7,829,585 (-)NCBIGRCr8
mRatBN7.297,501,225 - 7,502,327 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.095,216,040 - 5,217,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.094,264,669 - 4,265,857 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49245,608 - 246,796 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera93,347,148 - 3,348,250 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Acta1-ps2
17 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat

Markers in Region
AW184596  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.297,501,863 - 7,502,149 (+)MAPPERmRatBN7.2
Rnor_6.095,216,679 - 5,216,964NCBIRnor6.0
Rnor_5.094,265,394 - 4,265,679UniSTSRnor5.0
RGSC_v3.49245,786 - 246,071UniSTSRGSC3.4
Celera93,347,787 - 3,348,072UniSTS
Cytogenetic Map9q11UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28382 BioCyc
NCBI Gene 367200 ENTREZGENE
PhenoGen Acta1-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Acta1-ps2  actin, alpha 1, skeletal muscle, pseudogene 2  RGD1560901  similar to actin, alpha 1, skeletal muscle  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1560901  similar to actin, alpha 1, skeletal muscle   RGD1560901_predicted  similar to actin, alpha 1, skeletal muscle (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560901_predicted  similar to actin, alpha 1, skeletal muscle (predicted)  LOC367200  similar to actin, alpha 1, skeletal muscle  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC367200  similar to actin, alpha 1, skeletal muscle      Symbol and Name status set to provisional 70820 PROVISIONAL