Map3k15 (mitogen-activated protein kinase kinase kinase 15) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Map3k15 (mitogen-activated protein kinase kinase kinase 15) Rattus norvegicus
Analyze
Symbol: Map3k15
Name: mitogen-activated protein kinase kinase kinase 15
RGD ID: 1560603
Description: Predicted to enable ATP binding activity. Predicted to be involved in MAPK cascade and protein phosphorylation. Orthologous to human MAP3K15 (mitogen-activated protein kinase kinase kinase 15); INTERACTS WITH 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07038029.1; LOC501558; RGD1560603; similar to mitogen-activated protein kinase kinase kinase 15
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X34,713,150 - 34,859,054 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX34,713,175 - 34,858,807 (-)Ensembl
Rnor_6.0X37,342,251 - 37,755,373 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX37,643,169 - 37,705,263 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0X37,654,122 - 38,059,872 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X55,912,157 - 56,042,817 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX35,385,725 - 35,526,200 (-)NCBICelera
Cytogenetic MapXq14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Map3k15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X34,713,150 - 34,859,054 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX34,713,175 - 34,858,807 (-)Ensembl
Rnor_6.0X37,342,251 - 37,755,373 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX37,643,169 - 37,705,263 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0X37,654,122 - 38,059,872 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X55,912,157 - 56,042,817 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX35,385,725 - 35,526,200 (-)NCBICelera
Cytogenetic MapXq14NCBI
MAP3K15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X19,360,059 - 19,515,508 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX19,360,056 - 19,515,508 (-)EnsemblGRCh38hg38GRCh38
GRCh37X19,378,177 - 19,533,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X19,288,095 - 19,410,315 (-)NCBINCBI36hg18NCBI36
Build 34X19,137,830 - 19,260,051NCBI
CeleraX23,499,514 - 23,656,927 (-)NCBI
Cytogenetic MapXp22.12NCBI
HuRefX17,127,352 - 17,281,966 (-)NCBIHuRef
CHM1_1X19,409,233 - 19,563,759 (-)NCBICHM1_1
T2T-CHM13v2.0X18,942,795 - 19,098,393 (-)NCBI
Map3k15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X158,771,200 - 158,906,342 (+)NCBIGRCm39mm39
GRCm39 EnsemblX158,771,429 - 158,906,347 (+)Ensembl
GRCm38X159,988,204 - 160,123,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX159,988,433 - 160,123,351 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X156,426,365 - 156,561,283 (+)NCBIGRCm37mm9NCBIm37
CeleraX143,246,363 - 143,367,779 (+)NCBICelera
Cytogenetic MapXF4NCBI
Map3k15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555865,345 - 99,534 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555865,856 - 99,662 (+)NCBIChiLan1.0ChiLan1.0
MAP3K15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X19,346,814 - 19,518,249 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX19,346,814 - 19,518,249 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X11,984,867 - 12,137,090 (-)NCBIMhudiblu_PPA_v0panPan3
MAP3K15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X15,353,081 - 15,465,862 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX15,353,081 - 15,465,992 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X15,301,710 - 15,425,913 (-)NCBI
ROS_Cfam_1.0 EnsemblX15,312,525 - 15,426,249 (-)Ensembl
UMICH_Zoey_3.1X15,362,476 - 15,474,546 (-)NCBI
UNSW_CanFamBas_1.0X15,364,256 - 15,476,439 (-)NCBI
UU_Cfam_GSD_1.0X15,419,523 - 15,543,818 (-)NCBI
Map3k15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X8,417,779 - 8,469,243 (-)NCBI
SpeTri2.0NW_004936844905,249 - 958,946 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP3K15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX15,715,991 - 15,867,120 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X15,716,898 - 15,867,377 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X16,964,353 - 17,118,068 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAP3K15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X17,820,316 - 17,981,894 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX17,819,474 - 17,981,402 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605619,688,358 - 19,839,732 (-)NCBIVero_WHO_p1.0
Map3k15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248294,169,717 - 4,318,578 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248294,169,679 - 4,318,966 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH144512  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X35,574,449 - 35,574,584 (-)MAPPERmRatBN7.2
Rnor_6.0X37,518,533 - 37,518,667NCBIRnor6.0
Rnor_5.0X37,823,441 - 37,823,575UniSTSRnor5.0
RGSC_v3.4X56,776,439 - 56,776,573UniSTSRGSC3.4
CeleraX36,225,755 - 36,225,889UniSTS
RH 3.4 MapX520.0UniSTS
Cytogenetic MapXq21UniSTS
AI170398  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X34,714,460 - 34,714,644 (+)MAPPERmRatBN7.2
Rnor_6.0X37,343,562 - 37,343,745NCBIRnor6.0
Rnor_5.0X37,654,508 - 37,654,691UniSTSRnor5.0
RGSC_v3.4X55,913,471 - 55,913,654UniSTSRGSC3.4
CeleraX35,387,036 - 35,387,219UniSTS
RH 3.4 MapX500.8UniSTS
Cytogenetic MapXq21UniSTS
A010B08  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X35,548,043 - 35,548,309 (-)MAPPERmRatBN7.2
Rnor_6.0X37,544,779 - 37,545,044NCBIRnor6.0
Rnor_5.0X37,849,687 - 37,849,952UniSTSRnor5.0
RGSC_v3.4X56,749,904 - 56,750,169UniSTSRGSC3.4
CeleraX36,199,413 - 36,199,678UniSTS
Cytogenetic MapXq21UniSTS
RH127412  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X35,498,744 - 35,498,924 (-)MAPPERmRatBN7.2
Rnor_6.0X37,595,074 - 37,595,253NCBIRnor6.0
Rnor_5.0X37,899,982 - 37,900,161UniSTSRnor5.0
RGSC_v3.4X56,700,195 - 56,700,374UniSTSRGSC3.4
CeleraX36,150,116 - 36,150,295UniSTS
RH 3.4 MapX517.7UniSTS
Cytogenetic MapXq21UniSTS
RH129200  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X35,498,604 - 35,498,793 (-)MAPPERmRatBN7.2
Rnor_6.0X37,595,205 - 37,595,393NCBIRnor6.0
Rnor_5.0X37,900,113 - 37,900,301UniSTSRnor5.0
RGSC_v3.4X56,700,055 - 56,700,243UniSTSRGSC3.4
CeleraX36,149,976 - 36,150,164UniSTS
RH 3.4 MapX518.7UniSTS
Cytogenetic MapXq21UniSTS
RH131579  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X34,715,625 - 34,715,819 (+)MAPPERmRatBN7.2
Rnor_6.0X37,344,727 - 37,344,920NCBIRnor6.0
Rnor_5.0X37,655,673 - 37,655,866UniSTSRnor5.0
RGSC_v3.4X55,914,636 - 55,914,829UniSTSRGSC3.4
CeleraX35,388,201 - 35,388,394UniSTS
RH 3.4 MapX499.2UniSTS
Cytogenetic MapXq21UniSTS
RH142521  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X35,615,816 - 35,615,951 (-)MAPPERmRatBN7.2
Rnor_6.0X37,476,825 - 37,476,959NCBIRnor6.0
Rnor_5.0X37,783,256 - 37,783,390UniSTSRnor5.0
RGSC_v3.4X56,817,524 - 56,817,658UniSTSRGSC3.4
CeleraX36,267,020 - 36,267,154UniSTS
RH 3.4 MapX520.41UniSTS
Cytogenetic MapXq21UniSTS
AA819807  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X34,713,892 - 34,714,106 (+)MAPPERmRatBN7.2
mRatBN7.21682,511,694 - 82,511,908 (-)MAPPERmRatBN7.2
mRatBN7.2X34,713,892 - 34,714,106 (-)MAPPERmRatBN7.2
mRatBN7.21682,511,694 - 82,511,908 (+)MAPPERmRatBN7.2
Rnor_6.0X37,342,994 - 37,343,207NCBIRnor6.0
Rnor_6.01688,344,652 - 88,344,865NCBIRnor6.0
Rnor_5.01687,741,383 - 87,741,596UniSTSRnor5.0
Rnor_5.0X37,653,940 - 37,654,153UniSTSRnor5.0
RGSC_v3.4X55,912,903 - 55,913,116UniSTSRGSC3.4
RGSC_v3.41687,958,417 - 87,958,630UniSTSRGSC3.4
Celera1680,231,365 - 80,231,578UniSTS
CeleraX35,386,468 - 35,386,681UniSTS
Cytogenetic MapXq21UniSTS
RH137600  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X35,496,906 - 35,497,044 (-)MAPPERmRatBN7.2
Rnor_6.0X37,596,954 - 37,597,091NCBIRnor6.0
Rnor_5.0X37,901,862 - 37,901,999UniSTSRnor5.0
RGSC_v3.4X56,698,357 - 56,698,494UniSTSRGSC3.4
CeleraX36,148,278 - 36,148,415UniSTS
RH 3.4 MapX521.51UniSTS
Cytogenetic MapXq21UniSTS
RH141520  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21682,512,559 - 82,512,740 (-)MAPPERmRatBN7.2
mRatBN7.21682,512,559 - 82,512,740 (+)MAPPERmRatBN7.2
mRatBN7.2X34,713,049 - 34,713,230 (-)MAPPERmRatBN7.2
mRatBN7.2X34,713,049 - 34,713,230 (+)MAPPERmRatBN7.2
Rnor_6.0X37,342,151 - 37,342,331NCBIRnor6.0
Rnor_6.01688,345,517 - 88,345,697NCBIRnor6.0
Rnor_5.0X37,653,097 - 37,653,277UniSTSRnor5.0
Rnor_5.01687,742,248 - 87,742,428UniSTSRnor5.0
RGSC_v3.4X55,912,060 - 55,912,240UniSTSRGSC3.4
RGSC_v3.41687,959,282 - 87,959,462UniSTSRGSC3.4
Celera1680,232,230 - 80,232,410UniSTS
CeleraX35,385,625 - 35,385,805UniSTS
RH 3.4 MapX503.51UniSTS
Cytogenetic Map16q12.5UniSTS
Cytogenetic MapXq21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:54
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000043666
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000043666   ⟹   ENSRNOP00000050378
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX34,713,175 - 34,858,807 (-)Ensembl
RefSeq Acc Id: XM_039100568   ⟹   XP_038956496
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X34,713,150 - 34,859,054 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038956496 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_038956496   ⟸   XM_039100568
RefSeq Acc Id: ENSRNOP00000050378   ⟸   ENSRNOT00000043666

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LUY7-F1-model_v2 AlphaFold F1LUY7 1-637 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560603 AgrOrtholog
BioCyc Gene G2FUF-2491 BioCyc
Ensembl Genes ENSRNOG00000025290 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000050378 ENTREZGENE
  ENSRNOP00000050378.6 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043666 ENTREZGENE
  ENSRNOT00000043666.6 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  MAP3K_PH UniProtKB/TrEMBL
  MAP3K_TRAF-bd UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene 501558 ENTREZGENE
Pfam ASK_PH UniProtKB/TrEMBL
  DUF4071 UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PhenoGen Map3k15 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt F1LUY7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Map3k15  mitogen-activated protein kinase kinase kinase 15  AABR07038029.1    Data Merged 737654 PROVISIONAL
2019-11-08 AABR07038029.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2012-10-11 Map3k15  mitogen-activated protein kinase kinase kinase 15  RGD1560603  similar to mitogen-activated protein kinase kinase kinase 15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560603  similar to mitogen-activated protein kinase kinase kinase 15   RGD1560603_predicted  similar to mitogen-activated protein kinase kinase kinase 15 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560603_predicted  similar to mitogen-activated protein kinase kinase kinase 15 (predicted)  LOC501558  similar to mitogen-activated protein kinase kinase kinase 15  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501558  similar to mitogen-activated protein kinase kinase kinase 15      Symbol and Name status set to provisional 70820 PROVISIONAL