Cstf3 (cleavage stimulation factor, 3' pre-RNA, subunit 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cstf3 (cleavage stimulation factor, 3' pre-RNA, subunit 3) Mus musculus
Analyze
Symbol: Cstf3
Name: cleavage stimulation factor, 3' pre-RNA, subunit 3
RGD ID: 1552322
MGI Page MGI
Description: Predicted to enable mRNA binding activity. Predicted to be involved in co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleoplasm. Predicted to be part of mRNA cleavage stimulating factor complex. Predicted to be active in nucleus. Is expressed in several structures, including ganglia; liver; submandibular gland primordium; thymus primordium; and vibrissa. Orthologous to human CSTF3 (cleavage stimulation factor subunit 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732468G05Rik; C79532; CF-1 77 kDa subunit; cleavage stimulation factor 77 kDa subunit; cleavage stimulation factor subunit 3; CSTF 77 kDa subunit; CstF-77; MGC6373
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392104,420,829 - 104,495,770 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2104,420,868 - 104,495,774 (+)EnsemblGRCm39 Ensembl
GRCm382104,590,484 - 104,665,425 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,590,523 - 104,665,429 (+)EnsemblGRCm38mm10GRCm38
MGSCv372104,430,641 - 104,505,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362104,391,362 - 104,466,264 (+)NCBIMGSCv36mm8
Celera2105,828,672 - 105,903,653 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
5-fluorouracil  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
Aroclor 1254  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
cadmium sulfate  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
ethanol  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
furan  (EXP,ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP)
rac-lactic acid  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium dichromate  (ISO)
succimer  (EXP)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thioacetamide  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Pre-mRNA 3'-end processing complex assembly and function. Chan S, etal., Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):321-35. doi: 10.1002/wrna.54. Epub 2010 Oct 18.
2. A 7.5 Mb sequence-ready PAC contig and gene expression map of human chromosome 11p13-p14.1. Gawin B, etal., Genome Res 1999 Nov;9(11):1074-86.
3. Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors. Gruber AR, etal., Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11889558   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17386263   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21873635   PMID:23665500   PMID:25737280   PMID:30196744  


Genomics

Comparative Map Data
Cstf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392104,420,829 - 104,495,770 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2104,420,868 - 104,495,774 (+)EnsemblGRCm39 Ensembl
GRCm382104,590,484 - 104,665,425 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,590,523 - 104,665,429 (+)EnsemblGRCm38mm10GRCm38
MGSCv372104,430,641 - 104,505,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362104,391,362 - 104,466,264 (+)NCBIMGSCv36mm8
Celera2105,828,672 - 105,903,653 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.84NCBI
CSTF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,084,584 - 33,161,480 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1133,077,188 - 33,162,371 (-)EnsemblGRCh38hg38GRCh38
GRCh371133,106,130 - 33,183,026 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361133,062,706 - 33,139,613 (-)NCBINCBI36Build 36hg18NCBI36
Build 341133,062,727 - 33,139,578NCBI
Celera1133,252,825 - 33,329,726 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1132,800,798 - 32,877,697 (-)NCBIHuRef
CHM1_11133,105,588 - 33,182,478 (-)NCBICHM1_1
T2T-CHM13v2.01133,220,126 - 33,297,015 (-)NCBIT2T-CHM13v2.0
Cstf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83111,421,291 - 111,492,539 (+)NCBIGRCr8
mRatBN7.2390,966,415 - 91,037,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,966,354 - 91,042,196 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx394,460,422 - 94,531,676 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03103,059,495 - 103,130,743 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03100,889,656 - 100,960,806 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0394,530,586 - 94,603,378 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,530,586 - 94,607,588 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03101,156,169 - 101,228,401 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4389,919,376 - 89,991,676 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1389,815,940 - 89,892,116 (+)NCBI
Celera390,026,496 - 90,097,116 (+)NCBICelera
Cytogenetic Map3q32NCBI
Cstf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,050,088 - 13,123,784 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,049,908 - 13,124,274 (+)NCBIChiLan1.0ChiLan1.0
CSTF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2935,307,998 - 35,386,385 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11135,312,687 - 35,391,781 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01133,061,237 - 33,137,911 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,945,428 - 33,022,079 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,945,934 - 33,021,885 (-)Ensemblpanpan1.1panPan2
CSTF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11834,493,922 - 34,563,899 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1834,493,980 - 34,568,326 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1834,105,542 - 34,175,542 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01835,105,023 - 35,175,020 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1835,104,999 - 35,175,017 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11834,673,600 - 34,743,514 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01834,257,453 - 34,327,428 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01834,892,507 - 34,962,475 (+)NCBIUU_Cfam_GSD_1.0
Cstf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494731,629,531 - 31,707,483 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365334,754,514 - 4,831,769 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365334,754,335 - 4,832,278 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSTF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl227,769,421 - 27,850,382 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1227,769,457 - 27,850,382 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2230,402,895 - 30,418,796 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSTF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1132,083,831 - 32,106,704 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038129,218,549 - 129,295,945 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cstf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476714,071,392 - 14,144,258 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476714,071,196 - 14,144,758 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cstf3
1848 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1233
Count of miRNA genes:616
Interacting mature miRNAs:734
Transcripts:ENSMUST00000028599, ENSMUST00000122900, ENSMUST00000124944, ENSMUST00000126539, ENSMUST00000131761, ENSMUST00000137961
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
4141448Mpaps1_mmicrophthalmia anophthalmia susceptibility 1 (mouse)Not determined97028557112115196Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse

Markers in Region
D2Mit333  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382104,608,036 - 104,608,142UniSTSGRCm38
MGSCv372104,448,193 - 104,448,299UniSTSGRCm37
Celera2105,846,387 - 105,846,495UniSTS
Cytogenetic Map2E2UniSTS
cM Map247.5UniSTS
Whitehead Genetic250.3UniSTS
Whitehead/MRC_RH21405.42UniSTS
Whitehead_YAC2 UniSTS
D2Mit42  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382104,610,298 - 104,610,433UniSTSGRCm38
MGSCv372104,450,455 - 104,450,590UniSTSGRCm37
Celera2105,848,437 - 105,848,578UniSTS
Cytogenetic Map2E2UniSTS
cM Map247.5UniSTS
Whitehead Genetic250.3UniSTS
Whitehead_YAC2 UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
C79532  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382104,665,049 - 104,665,177UniSTSGRCm38
MGSCv372104,505,206 - 104,505,334UniSTSGRCm37
Celera2105,903,277 - 105,903,405UniSTS
Cytogenetic Map2E2UniSTS
cM Map257.9UniSTS
Whitehead/MRC_RH21405.52UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS
RH126683  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382104,665,125 - 104,665,348UniSTSGRCm38
MGSCv372104,505,282 - 104,505,505UniSTSGRCm37
Celera2105,903,353 - 105,903,576UniSTS
Cytogenetic Map2E2UniSTS
cM Map257.9UniSTS
Whitehead/MRC_RH21403.6UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000028599   ⟹   ENSMUSP00000028599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2104,420,868 - 104,495,774 (+)Ensembl
GRCm38.p6 Ensembl2104,590,523 - 104,665,429 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2104,420,877 - 104,441,751 (+)Ensembl
GRCm38.p6 Ensembl2104,590,532 - 104,611,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2104,485,885 - 104,493,783 (+)Ensembl
GRCm38.p6 Ensembl2104,655,540 - 104,663,438 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2104,494,011 - 104,495,084 (+)Ensembl
GRCm38.p6 Ensembl2104,663,666 - 104,664,739 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2104,493,483 - 104,494,524 (+)Ensembl
GRCm38.p6 Ensembl2104,663,138 - 104,664,179 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2104,420,963 - 104,439,774 (+)Ensembl
GRCm38.p6 Ensembl2104,590,618 - 104,609,429 (+)Ensembl
RefSeq Acc Id: NM_001037326   ⟹   NP_001032403
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392104,420,829 - 104,439,774 (+)NCBI
GRCm382104,590,484 - 104,609,429 (+)NCBI
MGSCv372104,430,641 - 104,505,582 (+)RGD
Celera2105,828,672 - 105,903,653 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_145529   ⟹   NP_663504
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392104,420,829 - 104,495,770 (+)NCBI
GRCm382104,590,484 - 104,665,425 (+)ENTREZGENE
MGSCv372104,430,641 - 104,505,582 (+)RGD
Celera2105,828,672 - 105,903,653 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_177253   ⟹   NP_796227
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392104,420,829 - 104,441,751 (+)NCBI
GRCm382104,590,484 - 104,611,406 (+)NCBI
MGSCv372104,430,641 - 104,505,582 (+)RGD
Celera2105,828,672 - 105,903,653 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_663504   ⟸   NM_145529
- Peptide Label: isoform 1
- UniProtKB: Q99LI7 (UniProtKB/Swiss-Prot),   Q3TXN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_796227   ⟸   NM_177253
- Peptide Label: isoform 2
- UniProtKB: Q8CE71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001032403   ⟸   NM_001037326
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: ENSMUSP00000028599   ⟸   ENSMUST00000028599
Protein Domains
Suppressor of forked

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99LI7-F1-model_v2 AlphaFold Q99LI7 1-717 view protein structure

Promoters
RGD ID:6831090
Promoter ID:MM_KWN:30837
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001037326,   NM_177253,   OTTMUST00000035498
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362104,429,801 - 104,430,832 (+)MPROMDB
RGD ID:6831092
Promoter ID:MM_KWN:30840
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000035502,   OTTMUST00000035503
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362104,503,471 - 104,503,971 (+)MPROMDB
RGD ID:6878108
Promoter ID:EPDNEW_M2505
Type:initiation region
Name:Cstf3_1
Description:Mus musculus cleavage stimulation factor, 3' pre-RNA, subunit3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382104,590,500 - 104,590,560EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1351825 AgrOrtholog
Ensembl Genes ENSMUSG00000027176 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028599 ENTREZGENE
  ENSMUST00000028599.8 UniProtKB/Swiss-Prot
  ENSMUST00000122900 ENTREZGENE
  ENSMUST00000137961 ENTREZGENE
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  1.25.40.1040 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rna14-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Suf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:228410 UniProtKB/Swiss-Prot
MGD MGI:1351825 ENTREZGENE
NCBI Gene 228410 ENTREZGENE
PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19980 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Suf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cstf3 PhenoGen
SMART HAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CSTF3_MOUSE UniProtKB/Swiss-Prot
  Q3TXN6 ENTREZGENE, UniProtKB/TrEMBL
  Q8CE71 ENTREZGENE, UniProtKB/TrEMBL
  Q99LI7 ENTREZGENE