Cstf3 (cleavage stimulation factor subunit 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cstf3 (cleavage stimulation factor subunit 3) Heterocephalus glaber
Analyze
Symbol: Cstf3
Name: cleavage stimulation factor subunit 3
RGD ID: 18928952
Description: ENCODES a protein that exhibits mRNA binding (inferred); INVOLVED IN co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway (inferred); mRNA 3'-end processing (inferred); RNA 3'-end processing (inferred); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; ASSOCIATED WITH intellectual disability (ortholog); FOUND IN mRNA cleavage stimulating factor complex (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476714,071,392 - 14,144,258 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476714,071,196 - 14,144,758 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cstf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476714,071,392 - 14,144,258 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476714,071,196 - 14,144,758 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CSTF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,084,584 - 33,161,480 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1133,077,188 - 33,162,371 (-)EnsemblGRCh38hg38GRCh38
GRCh371133,106,130 - 33,183,026 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361133,062,706 - 33,139,613 (-)NCBINCBI36Build 36hg18NCBI36
Build 341133,062,727 - 33,139,578NCBI
Celera1133,252,825 - 33,329,726 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1132,800,798 - 32,877,697 (-)NCBIHuRef
CHM1_11133,105,588 - 33,182,478 (-)NCBICHM1_1
T2T-CHM13v2.01133,220,126 - 33,297,015 (-)NCBIT2T-CHM13v2.0
Cstf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392104,420,829 - 104,495,770 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2104,420,868 - 104,495,774 (+)EnsemblGRCm39 Ensembl
GRCm382104,590,484 - 104,665,425 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,590,523 - 104,665,429 (+)EnsemblGRCm38mm10GRCm38
MGSCv372104,430,641 - 104,505,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362104,391,362 - 104,466,264 (+)NCBIMGSCv36mm8
Celera2105,828,672 - 105,903,653 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.84NCBI
Cstf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83111,421,291 - 111,492,539 (+)NCBIGRCr8
mRatBN7.2390,966,415 - 91,037,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,966,354 - 91,042,196 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx394,460,422 - 94,531,676 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03103,059,495 - 103,130,743 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03100,889,656 - 100,960,806 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0394,530,586 - 94,603,378 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,530,586 - 94,607,588 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03101,156,169 - 101,228,401 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4389,919,376 - 89,991,676 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1389,815,940 - 89,892,116 (+)NCBI
Celera390,026,496 - 90,097,116 (+)NCBICelera
Cytogenetic Map3q32NCBI
Cstf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,050,088 - 13,123,784 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,049,908 - 13,124,274 (+)NCBIChiLan1.0ChiLan1.0
CSTF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2935,307,998 - 35,386,385 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11135,312,687 - 35,391,781 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01133,061,237 - 33,137,911 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,945,428 - 33,022,079 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,945,934 - 33,021,885 (-)Ensemblpanpan1.1panPan2
CSTF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11834,493,922 - 34,563,899 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1834,493,980 - 34,568,326 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1834,105,542 - 34,175,542 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01835,105,023 - 35,175,020 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1835,104,999 - 35,175,017 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11834,673,600 - 34,743,514 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01834,257,453 - 34,327,428 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01834,892,507 - 34,962,475 (+)NCBIUU_Cfam_GSD_1.0
Cstf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494731,629,531 - 31,707,483 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365334,754,514 - 4,831,769 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365334,754,335 - 4,832,278 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSTF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl227,769,421 - 27,850,382 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1227,769,457 - 27,850,382 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2230,402,895 - 30,418,796 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSTF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1132,083,831 - 32,106,704 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038129,218,549 - 129,295,945 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000025246   ⟹   ENSHGLP00000025024
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476714,071,392 - 14,144,258 (+)Ensembl
RefSeq Acc Id: XM_004852073   ⟹   XP_004852130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476714,071,196 - 14,144,758 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004852130 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025024
  ENSHGLP00000058098
GenBank Protein JAN97853 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004852130   ⟸   XM_004852073
- UniProtKB: A0A0N8ESZ8 (UniProtKB/TrEMBL),   G5AN90 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000025024   ⟸   ENSHGLT00000025246


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017834 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000025246 ENTREZGENE
  ENSHGLT00000086023 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.1040 UniProtKB/TrEMBL
InterPro HAT UniProtKB/TrEMBL
  Rna14-like UniProtKB/TrEMBL
  Suf UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101713352 UniProtKB/TrEMBL
NCBI Gene Cstf3 ENTREZGENE
PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 3 UniProtKB/TrEMBL
  PTHR19980 UniProtKB/TrEMBL
Pfam Suf UniProtKB/TrEMBL
SMART HAT UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0N8ESZ8 ENTREZGENE, UniProtKB/TrEMBL
  G5AN90 ENTREZGENE, UniProtKB/TrEMBL