Cnot6l (CCR4-NOT transcription complex, subunit 6-like) - Rat Genome Database

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Gene: Cnot6l (CCR4-NOT transcription complex, subunit 6-like) Mus musculus
Analyze
Symbol: Cnot6l
Name: CCR4-NOT transcription complex, subunit 6-like
RGD ID: 1551166
MGI Page MGI
Description: Enables poly(A)-specific ribonuclease activity. Acts upstream of or within nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay and positive regulation of cell population proliferation. Located in cytoplasm. Is expressed in several structures, including brain; genitourinary system; gut; hemolymphoid system gland; and musculature. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4932442K20Rik; CCR4-NOT transcription complex subunit 6-like; DKFZp434K098; MGC29037; RIKEN cDNA 4932442K20 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39596,218,192 - 96,312,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl596,218,192 - 96,312,030 (-)EnsemblGRCm39 Ensembl
GRCm38596,070,333 - 96,164,198 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl596,070,333 - 96,164,171 (-)EnsemblGRCm38mm10GRCm38
MGSCv37596,504,756 - 96,591,009 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36596,315,891 - 96,402,292 (-)NCBIMGSCv36mm8
Celera593,419,034 - 93,505,443 (-)NCBICelera
Cytogenetic Map5E3NCBI
cM Map547.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 76 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cnot6lMouse(-)-demecolcine decreases expressionISOCNOT6L (Homo sapiens)6480464Demecolcine results in decreased expression of CNOT6L mRNACTDPMID:23649840
Cnot6lMouse(-)-epigallocatechin 3-gallate multiple interactionsISOCNOT6L (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of CNOT6L mRNACTDPMID:22079256
Cnot6lMouse1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of CNOT6L mRNACTDPMID:22206623
Cnot6lMouse17alpha-ethynylestradiol increases expressionISOCnot6l (Rattus norvegicus)6480464Ethinyl Estradiol results in increased expression of CNOT6L mRNACTDPMID:29097150
Cnot6lMouse2,3',4,4',5-Pentachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:31388691
Cnot6lMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of CNOT6L mRNACTDPMID:21570461
Cnot6lMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOCnot6l (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of CNOT6L mRNACTDPMID:33387578
Cnot6lMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCnot6l (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of CNOT6L mRNACTDPMID:32109520
Cnot6lMouse2,3,7,8-Tetrachlorodibenzofuran decreases expressionISOCnot6l (Rattus norvegicus)64804642 more ...CTDPMID:32109520
Cnot6lMouse2-butoxyethanol decreases expressionEXP 6480464n-butoxyethanol results in decreased expression of CNOT6L mRNACTDPMID:19812364
Cnot6lMouse3,4-methylenedioxymethamphetamine increases expressionISOCnot6l (Rattus norvegicus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of CNOT6L mRNACTDPMID:30071829
Cnot6lMouse4,4'-diaminodiphenylmethane decreases expressionEXP 64804644 and 4'-diaminodiphenylmethane results in decreased expression of CNOT6L mRNACTDPMID:18648102
Cnot6lMouse4,4'-sulfonyldiphenol decreases expressionEXP 6480464bisphenol S results in decreased expression of CNOT6L mRNACTDPMID:39298647
Cnot6lMouseacetamide decreases expressionISOCnot6l (Rattus norvegicus)6480464acetamide results in decreased expression of CNOT6L mRNACTDPMID:31881176
Cnot6lMouseacrylamide increases expressionISOCNOT6L (Homo sapiens)6480464Acrylamide results in increased expression of CNOT6L mRNACTDPMID:32763439
Cnot6lMousearistolochic acid A decreases expressionISOCNOT6L (Homo sapiens)6480464aristolochic acid I results in decreased expression of CNOT6L mRNACTDPMID:33212167
Cnot6lMousearsenous acid increases expressionISOCNOT6L (Homo sapiens)6480464Arsenic Trioxide results in increased expression of CNOT6L mRNACTDPMID:20458559
Cnot6lMousebenzo[a]pyrene decreases expressionEXP 6480464Benzo(a)pyrene results in decreased expression of CNOT6L mRNACTDPMID:19770486
Cnot6lMousebenzo[a]pyrene diol epoxide I decreases expressionISOCNOT6L (Homo sapiens)64804647 more ...CTDPMID:19150397
Cnot6lMousebis(2-ethylhexyl) phthalate decreases expressionEXP 6480464Diethylhexyl Phthalate results in decreased expression of CNOT6L mRNACTDPMID:33754040

1 to 20 of 76 rows

Biological Process
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Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cnot6lMouseCCR4-NOT complex part_ofISSUniProtKB:Q96LI52290270 UniProtGO_REF:0000024
Cnot6lMouseCCR4-NOT complex part_ofISOUniProtKB:Q96LI52290270 GO_CentralGO_REF:0000119
Cnot6lMousecytoplasm located_inISOUniProtKB:Q96LI52290270 GO_CentralGO_REF:0000119
Cnot6lMousecytoplasm located_inIDA 2290270 PMID:17452450MGIPMID:17452450
Cnot6lMousecytosol located_inISOUniProtKB:Q96LI52290270 GO_CentralGO_REF:0000119
Cnot6lMousecytosol located_inTAS 2290270 ReactomeReactome:R-MMU-9817704 more ...
Cnot6lMousenucleus located_inISOUniProtKB:Q96LI52290270 GO_CentralGO_REF:0000119
Cnot6lMousenucleus located_inISSUniProtKB:Q96LI52290270 UniProtGO_REF:0000024

Molecular Function

  

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cnot6lMousemicroRNA pathway   ISOCNOT6L (Homo sapiens)9850101 RGD 
1 to 19 of 19 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cnot6lMouseabnormal circulating glucose level  IAGP 5509061 MGIPMID:30926667
Cnot6lMouseabnormal circulating insulin level  IAGP 5509061 MGIPMID:30926667
Cnot6lMouseabnormal circulating lipid level  IAGP 5509061 MGIPMID:30926667
Cnot6lMouseabnormal homeostasis  IAGP 5509061 MGIPMID:30926667
Cnot6lMousedecreased brown adipose tissue amount  IAGP 5509061 MGIPMID:30926667
Cnot6lMousedecreased brown fat cell size  IAGP 5509061 MGIPMID:30926667
Cnot6lMousedecreased litter size  IAGP 5509061 MGIPMID:31924127
Cnot6lMousedecreased liver weight  IAGP 5509061 MGIPMID:30926667
Cnot6lMousedecreased respiratory quotient  IAGP 5509061 MGIPMID:30926667
Cnot6lMousedecreased subcutaneous adipose tissue amount  IAGP 5509061 MGIPMID:30926667
Cnot6lMousedecreased susceptibility to diet-induced hepatic steatosis  IAGP 5509061 MGIPMID:30926667
Cnot6lMousedecreased susceptibility to diet-induced obesity  IAGP 5509061 MGIPMID:30926667
Cnot6lMousedecreased white adipose tissue amount  IAGP 5509061 MGIPMID:30926667
Cnot6lMouseincreased basal metabolism  IAGP 5509061 MGIPMID:30926667
Cnot6lMouseincreased circulating ketone body level  IAGP 5509061 MGIPMID:30926667
Cnot6lMouseincreased lean body mass  IAGP 5509061 MGIPMID:30926667
Cnot6lMouseincreased oxygen consumption  IAGP 5509061 MGIPMID:30926667
Cnot6lMouseno abnormal phenotype detected  IAGP 5509061 MGIPMID:31924127
Cnot6lMouseno abnormal phenotype detected  IAGP 5509061 MGIPMID:34026442
1 to 19 of 19 rows

#
Reference Title
Reference Citation
1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes. Wahle E and Winkler GS, Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17015433   PMID:17452450   PMID:18287559   PMID:18554416   PMID:18799693   PMID:19521500   PMID:20133598   PMID:21267068   PMID:21677750   PMID:21741365   PMID:21873635   PMID:21897366  
PMID:27618784   PMID:30335155   PMID:30456367   PMID:30478191   PMID:30628007   PMID:30733279   PMID:30926667   PMID:31924127   PMID:32554809   PMID:33530472   PMID:33634103   PMID:34026442  
PMID:34788619   PMID:34936029   PMID:35385705   PMID:35390160   PMID:36001654   PMID:37349316   PMID:39433858  



Cnot6l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39596,218,192 - 96,312,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl596,218,192 - 96,312,030 (-)EnsemblGRCm39 Ensembl
GRCm38596,070,333 - 96,164,198 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl596,070,333 - 96,164,171 (-)EnsemblGRCm38mm10GRCm38
MGSCv37596,504,756 - 96,591,009 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36596,315,891 - 96,402,292 (-)NCBIMGSCv36mm8
Celera593,419,034 - 93,505,443 (-)NCBICelera
Cytogenetic Map5E3NCBI
cM Map547.29NCBI
CNOT6L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38477,713,387 - 77,820,269 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl477,713,387 - 77,819,615 (-)EnsemblGRCh38hg38GRCh38
GRCh37478,634,541 - 78,741,423 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36478,853,565 - 78,959,568 (-)NCBINCBI36Build 36hg18NCBI36
Build 34479,004,337 - 79,097,701NCBI
Celera475,935,929 - 76,042,004 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef474,386,458 - 74,492,461 (-)NCBIHuRef
CHM1_1478,611,478 - 78,717,345 (-)NCBICHM1_1
T2T-CHM13v2.0481,054,227 - 81,161,055 (-)NCBIT2T-CHM13v2.0
Cnot6l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81413,714,475 - 13,806,481 (+)NCBIGRCr8
mRatBN7.21413,410,499 - 13,502,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1413,411,281 - 13,498,203 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1413,379,451 - 13,466,326 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01414,679,308 - 14,766,183 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01413,395,794 - 13,482,664 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01415,059,101 - 15,148,255 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1415,059,387 - 15,146,586 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01415,000,591 - 15,089,212 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41414,924,620 - 15,011,984 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11414,877,885 - 15,010,870 (+)NCBI
Celera1413,458,539 - 13,545,193 (+)NCBICelera
Cytogenetic Map14p22NCBI
Cnot6l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554332,213,444 - 2,316,049 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554332,206,462 - 2,290,773 (-)NCBIChiLan1.0ChiLan1.0
CNOT6L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2352,244,754 - 52,353,101 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1452,431,326 - 52,539,612 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0446,374,255 - 46,482,552 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1452,220,159 - 52,327,311 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl452,263,010 - 52,320,307 (+)Ensemblpanpan1.1panPan2
CNOT6L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1322,192,800 - 2,305,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl322,145,813 - 2,306,229 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3239,584,726 - 39,698,628 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0322,218,607 - 2,332,531 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl322,171,626 - 2,332,326 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1322,217,455 - 2,331,474 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0322,165,687 - 2,279,692 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03237,893,391 - 38,007,445 (+)NCBIUU_Cfam_GSD_1.0
Cnot6l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528510,004,724 - 10,105,815 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366761,408,048 - 1,502,519 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366761,401,428 - 1,474,167 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNOT6L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl873,185,999 - 73,335,741 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1873,191,721 - 73,335,779 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2877,392,505 - 77,496,997 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNOT6L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1726,210,368 - 26,312,938 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl726,217,371 - 26,312,567 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660374,562,902 - 4,666,026 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnot6l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475713,219,267 - 13,340,955 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475713,218,464 - 13,346,404 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Cnot6l
3260 total Variants

Predicted Target Of
Summary Value
Count of predictions:4390
Count of miRNA genes:910
Interacting mature miRNAs:1308
Transcripts:ENSMUST00000036646, ENSMUST00000113005, ENSMUST00000122003, ENSMUST00000129646, ENSMUST00000137066, ENSMUST00000137207, ENSMUST00000141383, ENSMUST00000152490, ENSMUST00000154500, ENSMUST00000155901
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 56 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse

1 to 10 of 56 rows
UniSTS:235227  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38596,074,745 - 96,074,945UniSTSGRCm38
MGSCv37596,503,764 - 96,503,964UniSTSGRCm37
Celera593,418,042 - 93,418,242UniSTS
Cytogenetic Map5E3UniSTS
UniSTS:235229  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38596,072,357 - 96,072,448UniSTSGRCm38
MGSCv37596,501,376 - 96,501,467UniSTSGRCm37
Celera593,415,653 - 93,415,744UniSTS
Cytogenetic Map5E3UniSTS
UniSTS:235228  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38596,075,240 - 96,075,484UniSTSGRCm38
MGSCv37596,504,259 - 96,504,503UniSTSGRCm37
Celera593,418,537 - 93,418,781UniSTS
Cytogenetic Map5E3UniSTS






1 to 25 of 25 rows
RefSeq Transcripts NM_001285511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC149285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF173938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV652166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV655560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 25 of 25 rows

Ensembl Acc Id: ENSMUST00000036646   ⟹   ENSMUSP00000047522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,223,448 - 96,309,614 (-)Ensembl
GRCm38.p6 Ensembl596,075,589 - 96,161,755 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113005   ⟹   ENSMUSP00000108629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,223,596 - 96,309,614 (-)Ensembl
GRCm38.p6 Ensembl596,075,737 - 96,161,755 (-)Ensembl
Ensembl Acc Id: ENSMUST00000122003   ⟹   ENSMUSP00000113821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,224,660 - 96,309,406 (-)Ensembl
GRCm38.p6 Ensembl596,076,801 - 96,161,547 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129646   ⟹   ENSMUSP00000123653
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,254,158 - 96,309,601 (-)Ensembl
GRCm38.p6 Ensembl596,106,299 - 96,161,742 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,253,469 - 96,276,887 (-)Ensembl
GRCm38.p6 Ensembl596,105,610 - 96,129,028 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137207   ⟹   ENSMUSP00000121627
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,278,956 - 96,312,030 (-)Ensembl
GRCm38.p6 Ensembl596,131,097 - 96,164,171 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141383   ⟹   ENSMUSP00000114436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,278,920 - 96,309,730 (-)Ensembl
GRCm38.p6 Ensembl596,131,061 - 96,161,871 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,223,435 - 96,234,792 (-)Ensembl
GRCm38.p6 Ensembl596,075,576 - 96,086,933 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154500   ⟹   ENSMUSP00000116326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,279,067 - 96,309,622 (-)Ensembl
GRCm38.p6 Ensembl596,131,208 - 96,161,763 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155901   ⟹   ENSMUSP00000119415
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl596,218,192 - 96,309,849 (-)Ensembl
GRCm38.p6 Ensembl596,070,333 - 96,161,990 (-)Ensembl
RefSeq Acc Id: NM_001285511   ⟹   NP_001272440
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39596,218,192 - 96,309,406 (-)NCBI
GRCm38596,070,333 - 96,161,547 (-)NCBI
Celera593,413,629 - 93,505,443 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285514   ⟹   NP_001272443
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39596,218,192 - 96,309,614 (-)NCBI
GRCm38596,070,333 - 96,161,755 (-)NCBI
Celera593,413,629 - 93,505,443 (-)NCBI
Sequence:
RefSeq Acc Id: NM_144910   ⟹   NP_659159
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39596,218,192 - 96,309,849 (-)NCBI
GRCm38596,070,333 - 96,161,990 (-)NCBI
MGSCv37596,504,756 - 96,591,009 (-)RGD
Celera593,413,629 - 93,505,443 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_178854   ⟹   NP_849185
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39596,218,192 - 96,309,614 (-)NCBI
GRCm38596,070,333 - 96,161,755 (-)NCBI
MGSCv37596,504,756 - 96,591,009 (-)RGD
Celera593,413,629 - 93,505,443 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534870   ⟹   XP_006534933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39596,218,192 - 96,312,044 (-)NCBI
GRCm38596,070,333 - 96,164,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534871   ⟹   XP_006534934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39596,218,192 - 96,309,661 (-)NCBI
GRCm38596,070,333 - 96,161,819 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534872   ⟹   XP_006534935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39596,218,192 - 96,263,676 (-)NCBI
GRCm38596,070,333 - 96,115,815 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254398   ⟹   XP_030110258
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39596,218,192 - 96,310,399 (-)NCBI
GRCm38596,070,333 - 96,162,540 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254399   ⟹   XP_030110259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39596,218,192 - 96,309,318 (-)NCBI
GRCm38596,070,333 - 96,161,680 (-)NCBI
Sequence:
1 to 5 of 17 rows
1 to 5 of 17 rows
RefSeq Acc Id: NP_849185   ⟸   NM_178854
- Peptide Label: isoform 2
- UniProtKB: Q8VEG6 (UniProtKB/Swiss-Prot),   Q8C0P4 (UniProtKB/Swiss-Prot),   Q3U9M0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_659159   ⟸   NM_144910
- Peptide Label: isoform 1
- UniProtKB: Q8VEG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272443   ⟸   NM_001285514
- Peptide Label: isoform 3
- UniProtKB: Q8VEG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272440   ⟸   NM_001285511
- Peptide Label: isoform 1
- UniProtKB: Q8VEG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534933   ⟸   XM_006534870
- Peptide Label: isoform X1
- UniProtKB: Q8VEG6 (UniProtKB/Swiss-Prot)
- Sequence:

Name Modeler Protein Id AA Range Protein Structure
AF-Q8VEG6-F1-model_v2 AlphaFold Q8VEG6 1-555 view protein structure

RGD ID:6887220
Promoter ID:EPDNEW_M7061
Type:multiple initiation site
Name:Cnot6l_1
Description:Mus musculus CCR4-NOT transcription complex, subunit 6-like ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38596,161,757 - 96,161,817EPDNEW
RGD ID:6837280
Promoter ID:MM_KWN:42995
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4
Transcripts:ENSMUST00000113004,   OTTMUST00000065789
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36596,560,941 - 96,561,441 (-)MPROMDB
RGD ID:6837283
Promoter ID:MM_KWN:42996
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000113005,   OTTMUST00000065781,   OTTMUST00000065782,   OTTMUST00000065784,   OTTMUST00000065787,   OTTMUST00000065788,   UC008YFD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36596,590,551 - 96,591,982 (-)MPROMDB
RGD ID:6837278
Promoter ID:MM_KWN:42997
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B6,   Spleen
Transcripts:OTTMUST00000065786
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36596,592,904 - 96,593,404 (-)MPROMDB


1 to 38 of 38 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000034724 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000113005 ENTREZGENE
  ENSMUST00000113005.9 UniProtKB/Swiss-Prot
  ENSMUST00000122003.8 UniProtKB/Swiss-Prot
  ENSMUST00000155901 ENTREZGENE
  ENSMUST00000155901.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.60.10.10 UniProtKB/Swiss-Prot
  3.80.10.10 UniProtKB/Swiss-Prot
InterPro CCR4/nocturin_mRNA_transcr UniProtKB/Swiss-Prot
  Deadenylase_CCR4b UniProtKB/Swiss-Prot
  Endo/exonu/phosph_ase_sf UniProtKB/Swiss-Prot
  Endo/exonuclease/phosphatase UniProtKB/Swiss-Prot
  Leu-rich_rpt UniProtKB/Swiss-Prot
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:231464 UniProtKB/Swiss-Prot
MGD MGI:2443154 ENTREZGENE
NCBI Gene Cnot6l ENTREZGENE
PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 UniProtKB/Swiss-Prot
  CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 6-LIKE UniProtKB/Swiss-Prot
Pfam Exo_endo_phos UniProtKB/Swiss-Prot
  LRR_8 UniProtKB/Swiss-Prot
PhenoGen Cnot6l PhenoGen
PROSITE LRR UniProtKB/Swiss-Prot
SMART LRR_TYP UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
  SSF56219 UniProtKB/Swiss-Prot
UniProt CNO6L_MOUSE UniProtKB/Swiss-Prot
  D3YVH6_MOUSE UniProtKB/TrEMBL
  D3YXZ0_MOUSE UniProtKB/TrEMBL
  D3Z2G5_MOUSE UniProtKB/TrEMBL
  D3Z5R3_MOUSE UniProtKB/TrEMBL
  F8WJG1_MOUSE UniProtKB/TrEMBL
  Q3U9M0 ENTREZGENE
  Q8C0P4 ENTREZGENE
  Q8VEG6 ENTREZGENE
UniProt Secondary Q3U9M0 UniProtKB/Swiss-Prot
  Q8C0P4 UniProtKB/Swiss-Prot
1 to 38 of 38 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Cnot6l  CCR4-NOT transcription complex, subunit 6-like  4932442K20Rik  RIKEN cDNA 4932442K20 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 4932442K20Rik  RIKEN cDNA 4932442K20 gene  Cnot6l  CCR4-NOT transcription complex, subunit 6-like  Symbol and/or name change 5135510 APPROVED