Symbol:
CNOT6L
Name:
CCR4-NOT transcription complex subunit 6 like
RGD ID:
11743640
Description:
ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (inferred); catalytic activity (inferred); exonuclease activity (inferred); INVOLVED IN mRNA destabilization (ortholog); nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ortholog); positive regulation of cell population proliferation (ortholog); PARTICIPATES IN microRNA pathway; FOUND IN CCR4-NOT complex (ortholog); cytosol (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
CCR4-NOT transcription complex subunit 6-like
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 3 52,244,754 - 52,353,101 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 4 52,431,326 - 52,539,612 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 4 46,374,255 - 46,482,552 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 4 52,220,159 - 52,327,311 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 4 52,263,010 - 52,320,307 (+) Ensembl panpan1.1 panPan2
JBrowse:
View Region in Genome Browser (JBrowse)
Model
CNOT6L (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 3 52,244,754 - 52,353,101 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 4 52,431,326 - 52,539,612 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 4 46,374,255 - 46,482,552 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 4 52,220,159 - 52,327,311 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 4 52,263,010 - 52,320,307 (+) Ensembl panpan1.1 panPan2
CNOT6L (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 4 77,713,387 - 77,820,269 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 4 77,713,387 - 77,819,615 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 4 78,634,541 - 78,741,423 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 4 78,853,565 - 78,959,568 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 4 79,004,337 - 79,097,701 NCBI Celera 4 75,935,929 - 76,042,004 (-) NCBI Celera Cytogenetic Map 4 q21.1 NCBI HuRef 4 74,386,458 - 74,492,461 (-) NCBI HuRef CHM1_1 4 78,611,478 - 78,717,345 (-) NCBI CHM1_1 T2T-CHM13v2.0 4 81,054,227 - 81,161,055 (-) NCBI T2T-CHM13v2.0
Cnot6l (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 5 96,218,192 - 96,312,044 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 5 96,218,192 - 96,312,030 (-) Ensembl GRCm39 Ensembl GRCm38 5 96,070,333 - 96,164,198 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 5 96,070,333 - 96,164,171 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 5 96,504,756 - 96,591,009 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 5 96,315,891 - 96,402,292 (-) NCBI MGSCv36 mm8 Celera 5 93,419,034 - 93,505,443 (-) NCBI Celera Cytogenetic Map 5 E3 NCBI cM Map 5 47.29 NCBI
Cnot6l (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 14 13,714,475 - 13,806,481 (+) NCBI GRCr8 mRatBN7.2 14 13,410,499 - 13,502,511 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 14 13,411,281 - 13,498,203 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 14 13,379,451 - 13,466,326 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 14 14,679,308 - 14,766,183 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 14 13,395,794 - 13,482,664 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 14 15,059,101 - 15,148,255 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 14 15,059,387 - 15,146,586 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 14 15,000,591 - 15,089,212 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 14 14,924,620 - 15,011,984 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 14 14,877,885 - 15,010,870 (+) NCBI Celera 14 13,458,539 - 13,545,193 (+) NCBI Celera Cytogenetic Map 14 p22 NCBI
Cnot6l (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955433 2,213,444 - 2,316,049 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955433 2,206,462 - 2,290,773 (-) NCBI ChiLan1.0 ChiLan1.0
CNOT6L (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 32 2,192,800 - 2,305,526 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 32 2,145,813 - 2,306,229 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 32 39,584,726 - 39,698,628 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 32 2,218,607 - 2,332,531 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 32 2,171,626 - 2,332,326 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 32 2,217,455 - 2,331,474 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 32 2,165,687 - 2,279,692 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 32 37,893,391 - 38,007,445 (+) NCBI UU_Cfam_GSD_1.0
Cnot6l (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405285 10,004,724 - 10,105,815 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936676 1,408,048 - 1,502,519 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936676 1,401,428 - 1,474,167 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
CNOT6L (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 8 73,185,999 - 73,335,741 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 8 73,191,721 - 73,335,779 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 8 77,392,505 - 77,496,997 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CNOT6L (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 7 26,210,368 - 26,312,938 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 7 26,217,371 - 26,312,567 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666037 4,562,902 - 4,666,026 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Cnot6l (Heterocephalus glaber - naked mole-rat)
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSPPAT00000036798 ⟹ ENSPPAP00000014122
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 4 52,263,010 - 52,320,307 (+) Ensembl
RefSeq Acc Id:
XM_034958604 ⟹ XP_034814495
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 3 52,245,351 - 52,353,101 (+) NCBI NHGRI_mPanPan1 4 52,431,993 - 52,539,612 (+) NCBI Mhudiblu_PPA_v0 4 46,374,964 - 46,482,552 (+) NCBI
RefSeq Acc Id:
XM_034958605 ⟹ XP_034814496
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 3 52,245,310 - 52,353,101 (+) NCBI NHGRI_mPanPan1 4 52,431,905 - 52,539,612 (+) NCBI Mhudiblu_PPA_v0 4 46,374,958 - 46,482,552 (+) NCBI
RefSeq Acc Id:
XM_034958606 ⟹ XP_034814497
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 3 52,244,754 - 52,353,101 (+) NCBI NHGRI_mPanPan1 4 52,431,326 - 52,539,612 (+) NCBI Mhudiblu_PPA_v0 4 46,374,255 - 46,482,552 (+) NCBI
RefSeq Acc Id:
XM_063603542 ⟹ XP_063459612
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 3 52,263,762 - 52,353,101 (+) NCBI
RefSeq Acc Id:
XP_034814497 ⟸ XM_034958606
- Peptide Label:
isoform X3
- UniProtKB:
A0A2R9AFH9 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_034814496 ⟸ XM_034958605
- Peptide Label:
isoform X2
- UniProtKB:
A0A2R9AFH9 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_034814495 ⟸ XM_034958604
- Peptide Label:
isoform X1
- UniProtKB:
A0A2R9AFH9 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSPPAP00000014122 ⟸ ENSPPAT00000036798
RefSeq Acc Id:
XP_063459612 ⟸ XM_063603542
- Peptide Label:
isoform X3
- UniProtKB:
A0A2R9AFH9 (UniProtKB/TrEMBL)