Churc1 (churchill domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Churc1 (churchill domain containing 1) Mus musculus
Analyze
Symbol: Churc1
Name: churchill domain containing 1
RGD ID: 1550122
MGI Page MGI
Description: Predicted to enable DNA binding activity. Predicted to be involved in fibroblast growth factor receptor signaling pathway. Predicted to act upstream of or within mesoderm development and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in brain; cranial ganglion; and dorsal root ganglion. Orthologous to human CHURC1 (churchill domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700030P15Rik; chch; My015; protein Churchill; RIKEN cDNA 1700030P15 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391276,812,312 - 76,829,954 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1276,812,312 - 76,829,954 (+)EnsemblGRCm39 Ensembl
GRCm381276,765,538 - 76,783,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1276,765,538 - 76,783,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371277,866,560 - 77,884,167 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361277,684,387 - 77,702,020 (+)NCBIMGSCv36mm8
Celera1277,847,888 - 77,865,485 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1233.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (ISA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14651851   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24952961  
PMID:34321999   PMID:38355793  


Genomics

Comparative Map Data
Churc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391276,812,312 - 76,829,954 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1276,812,312 - 76,829,954 (+)EnsemblGRCm39 Ensembl
GRCm381276,765,538 - 76,783,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1276,765,538 - 76,783,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371277,866,560 - 77,884,167 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361277,684,387 - 77,702,020 (+)NCBIMGSCv36mm8
Celera1277,847,888 - 77,865,485 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1233.73NCBI
CHURC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381464,914,455 - 64,935,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1464,914,361 - 64,944,591 (+)EnsemblGRCh38hg38GRCh38
GRCh371465,381,173 - 65,402,086 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361464,450,893 - 64,471,666 (+)NCBINCBI36Build 36hg18NCBI36
Build 341464,450,892 - 64,471,666NCBI
Celera1445,435,725 - 45,456,498 (+)NCBICelera
Cytogenetic Map14q23.3NCBI
HuRef1445,550,703 - 45,571,710 (+)NCBIHuRef
CHM1_11465,319,246 - 65,340,255 (+)NCBICHM1_1
T2T-CHM13v2.01459,119,323 - 59,140,237 (+)NCBIT2T-CHM13v2.0
Churc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86101,203,778 - 101,218,364 (+)NCBIGRCr8
mRatBN7.2695,464,488 - 95,485,208 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl695,470,683 - 95,619,586 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx695,859,353 - 95,873,851 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0696,157,893 - 96,172,388 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0695,586,691 - 95,601,186 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0699,817,439 - 99,831,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl699,817,431 - 99,831,576 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06109,213,899 - 109,228,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4699,349,205 - 99,364,032 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1699,352,657 - 99,367,493 (+)NCBI
Celera693,889,940 - 93,904,373 (+)NCBICelera
Cytogenetic Map6q24NCBI
Churc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554664,855,509 - 5,013,568 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554664,991,571 - 5,013,568 (-)NCBIChiLan1.0ChiLan1.0
CHURC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21566,028,203 - 66,048,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11465,244,726 - 65,265,325 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01445,497,783 - 45,518,393 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11464,377,180 - 64,406,694 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1464,377,180 - 64,398,135 (+)Ensemblpanpan1.1panPan2
CHURC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1839,301,090 - 39,318,352 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha838,993,476 - 39,010,423 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0839,524,123 - 39,541,093 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl839,523,840 - 39,541,089 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1839,145,417 - 39,162,376 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0839,218,253 - 39,235,185 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0839,577,289 - 39,594,268 (+)NCBIUU_Cfam_GSD_1.0
Churc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864065,604,640 - 65,623,823 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364958,567,894 - 8,713,978 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364958,567,908 - 8,587,059 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHURC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl788,985,083 - 89,012,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1788,985,019 - 89,013,119 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2795,365,933 - 95,394,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHURC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12442,127,080 - 42,155,572 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2442,127,093 - 42,148,474 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605330,297,389 - 30,326,344 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Churc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473435,964,914 - 36,117,852 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473436,098,613 - 36,117,928 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Churc1
660 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:444
Count of miRNA genes:238
Interacting mature miRNAs:253
Transcripts:ENSMUST00000041262, ENSMUST00000110399, ENSMUST00000126408, ENSMUST00000152917
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse

Markers in Region
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000041262   ⟹   ENSMUSP00000047015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1276,812,312 - 76,829,954 (+)Ensembl
GRCm38.p6 Ensembl1276,765,538 - 76,783,180 (+)Ensembl
Ensembl Acc Id: ENSMUST00000110399   ⟹   ENSMUSP00000106029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1276,812,349 - 76,829,921 (+)Ensembl
GRCm38.p6 Ensembl1276,765,575 - 76,783,147 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126408   ⟹   ENSMUSP00000122587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1276,812,329 - 76,829,893 (+)Ensembl
GRCm38.p6 Ensembl1276,765,555 - 76,783,119 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1276,815,262 - 76,822,685 (+)Ensembl
GRCm38.p6 Ensembl1276,768,488 - 76,775,911 (+)Ensembl
RefSeq Acc Id: NM_206534   ⟹   NP_996257
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391276,812,312 - 76,829,954 (+)NCBI
GRCm381276,765,538 - 76,783,180 (+)NCBI
MGSCv371277,866,560 - 77,884,167 (+)RGD
Celera1277,847,888 - 77,865,485 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_154884
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391276,812,312 - 76,829,954 (+)NCBI
GRCm381276,765,538 - 76,783,180 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_996257 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH19472 (Get FASTA)   NCBI Sequence Viewer  
  AAH76499 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000047015
  ENSMUSP00000047015.8
  ENSMUSP00000106029.3
  ENSMUSP00000122587.2
GenBank Protein Q6DG52 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_996257   ⟸   NM_206534
- UniProtKB: Q8VCP1 (UniProtKB/Swiss-Prot),   Q6DG52 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000106029   ⟸   ENSMUST00000110399
Ensembl Acc Id: ENSMUSP00000122587   ⟸   ENSMUST00000126408
Ensembl Acc Id: ENSMUSP00000047015   ⟸   ENSMUST00000041262

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6DG52-F1-model_v2 AlphaFold Q6DG52 1-112 view protein structure

Promoters
RGD ID:8678594
Promoter ID:EPDNEW_M17327
Type:initiation region
Name:Churc1_1
Description:Mus musculus churchill domain containing 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381276,765,566 - 76,765,626EPDNEW
RGD ID:6822967
Promoter ID:MM_KWN:11989
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000085463,   OTTMUST00000085468,   OTTMUST00000085470,   OTTMUST00000085473,   UC007NYR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361277,866,369 - 77,866,869 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923684 AgrOrtholog
Ensembl Genes ENSMUSG00000090258 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041262 ENTREZGENE
  ENSMUST00000041262.14 UniProtKB/Swiss-Prot
  ENSMUST00000110399.3 UniProtKB/Swiss-Prot
  ENSMUST00000126408 ENTREZGENE
  ENSMUST00000126408.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.4240 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Churchill_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transcrpt_activator_Churchill UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:211151 UniProtKB/Swiss-Prot
MGD MGI:1923684 ENTREZGENE
NCBI Gene Churc1 ENTREZGENE
PANTHER PROTEIN CHURCHILL UniProtKB/Swiss-Prot
  PROTEIN CHURCHILL UniProtKB/TrEMBL
  PROTEIN CHURCHILL UniProtKB/TrEMBL
  PTHR31931 UniProtKB/Swiss-Prot
Pfam Churchill UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Churc1 PhenoGen
UniProt CHUR_MOUSE UniProtKB/Swiss-Prot
  D3Z553_MOUSE UniProtKB/TrEMBL
  Q6DG52 ENTREZGENE
  Q8VCP1 ENTREZGENE
UniProt Secondary Q8VCP1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Churc1  churchill domain containing 1  1700030P15Rik  RIKEN cDNA 1700030P15 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 1700030P15Rik  RIKEN cDNA 1700030P15 gene  Churc1  churchill domain containing 1  Symbol and/or name change 5135510 APPROVED