CHURC1 (churchill domain containing 1) - Rat Genome Database

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Gene: CHURC1 (churchill domain containing 1) Sus scrofa
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Symbol: CHURC1
Name: churchill domain containing 1
RGD ID: 13890414
Description: ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN positive regulation of DNA-templated transcription (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein Churchill
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl788,985,083 - 89,012,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1788,985,019 - 89,013,119 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2795,365,933 - 95,394,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CHURC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl788,985,083 - 89,012,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1788,985,019 - 89,013,119 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2795,365,933 - 95,394,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHURC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381464,914,455 - 64,935,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1464,914,361 - 64,944,591 (+)EnsemblGRCh38hg38GRCh38
GRCh371465,381,173 - 65,402,086 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361464,450,893 - 64,471,666 (+)NCBINCBI36Build 36hg18NCBI36
Build 341464,450,892 - 64,471,666NCBI
Celera1445,435,725 - 45,456,498 (+)NCBICelera
Cytogenetic Map14q23.3NCBI
HuRef1445,550,703 - 45,571,710 (+)NCBIHuRef
CHM1_11465,319,246 - 65,340,255 (+)NCBICHM1_1
T2T-CHM13v2.01459,119,323 - 59,140,237 (+)NCBIT2T-CHM13v2.0
Churc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391276,812,312 - 76,829,954 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1276,812,312 - 76,829,954 (+)EnsemblGRCm39 Ensembl
GRCm381276,765,538 - 76,783,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1276,765,538 - 76,783,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371277,866,560 - 77,884,167 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361277,684,387 - 77,702,020 (+)NCBIMGSCv36mm8
Celera1277,847,888 - 77,865,485 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1233.73NCBI
Churc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86101,203,778 - 101,218,364 (+)NCBIGRCr8
mRatBN7.2695,464,488 - 95,485,208 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl695,470,683 - 95,619,586 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx695,859,353 - 95,873,851 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0696,157,893 - 96,172,388 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0695,586,691 - 95,601,186 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0699,817,439 - 99,831,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl699,817,431 - 99,831,576 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06109,213,899 - 109,228,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4699,349,205 - 99,364,032 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1699,352,657 - 99,367,493 (+)NCBI
Celera693,889,940 - 93,904,373 (+)NCBICelera
Cytogenetic Map6q24NCBI
Churc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554664,855,509 - 5,013,568 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554664,991,571 - 5,013,568 (-)NCBIChiLan1.0ChiLan1.0
CHURC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21566,028,203 - 66,048,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11465,244,726 - 65,265,325 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01445,497,783 - 45,518,393 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11464,377,180 - 64,406,694 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1464,377,180 - 64,398,135 (+)Ensemblpanpan1.1panPan2
CHURC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1839,301,090 - 39,318,352 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha838,993,476 - 39,010,423 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0839,524,123 - 39,541,093 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl839,523,840 - 39,541,089 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1839,145,417 - 39,162,376 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0839,218,253 - 39,235,185 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0839,577,289 - 39,594,268 (+)NCBIUU_Cfam_GSD_1.0
Churc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864065,604,640 - 65,623,823 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364958,567,894 - 8,713,978 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364958,567,908 - 8,587,059 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHURC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12442,127,080 - 42,155,572 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2442,127,093 - 42,148,474 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605330,297,389 - 30,326,344 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Churc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473435,964,914 - 36,117,852 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473436,098,613 - 36,117,928 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CHURC1
801 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000031251   ⟹   ENSSSCP00000019650
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl788,985,083 - 89,003,906 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000103336   ⟹   ENSSSCP00000076965
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl788,985,083 - 89,012,131 (+)Ensembl
RefSeq Acc Id: XM_003128640   ⟹   XP_003128688
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1788,985,019 - 89,003,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013978294   ⟹   XP_013833748
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1788,985,019 - 89,013,119 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013833748   ⟸   XM_013978294
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003128688   ⟸   XM_003128640
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UDW4 (UniProtKB/TrEMBL),   A0A4X1UDV9 (UniProtKB/TrEMBL),   A0A8D1F017 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000019650   ⟸   ENSSSCT00000031251
Ensembl Acc Id: ENSSSCP00000076965   ⟸   ENSSSCT00000103336


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022147 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015081281 UniProtKB/TrEMBL
  ENSSSCG00025042874 UniProtKB/TrEMBL
  ENSSSCG00030042468 UniProtKB/TrEMBL
  ENSSSCG00035009070 UniProtKB/TrEMBL
  ENSSSCG00040048734 UniProtKB/TrEMBL
  ENSSSCG00045005340 UniProtKB/TrEMBL
  ENSSSCG00050061028 UniProtKB/TrEMBL
  ENSSSCG00055006190 UniProtKB/TrEMBL
  ENSSSCG00060051488 UniProtKB/TrEMBL
  ENSSSCG00065060278 UniProtKB/TrEMBL
  ENSSSCG00070016047 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031251 ENTREZGENE
  ENSSSCT00000031251.4 UniProtKB/TrEMBL
  ENSSSCT00000103336.1 UniProtKB/TrEMBL
  ENSSSCT00015110874.1 UniProtKB/TrEMBL
  ENSSSCT00015110875.1 UniProtKB/TrEMBL
  ENSSSCT00025058152.1 UniProtKB/TrEMBL
  ENSSSCT00030059128.1 UniProtKB/TrEMBL
  ENSSSCT00030059145.1 UniProtKB/TrEMBL
  ENSSSCT00035011365.1 UniProtKB/TrEMBL
  ENSSSCT00040065671.1 UniProtKB/TrEMBL
  ENSSSCT00040065740.1 UniProtKB/TrEMBL
  ENSSSCT00045008875.1 UniProtKB/TrEMBL
  ENSSSCT00050083176.1 UniProtKB/TrEMBL
  ENSSSCT00055012058.1 UniProtKB/TrEMBL
  ENSSSCT00060070077.1 UniProtKB/TrEMBL
  ENSSSCT00060070081.1 UniProtKB/TrEMBL
  ENSSSCT00065082567.1 UniProtKB/TrEMBL
  ENSSSCT00070031520.1 UniProtKB/TrEMBL
  ENSSSCT00070031524.1 UniProtKB/TrEMBL
  ENSSSCT00070031529.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.4240 UniProtKB/TrEMBL
InterPro Churchill_sf UniProtKB/TrEMBL
  Transcrpt_activator_Churchill UniProtKB/TrEMBL
KEGG Report ssc:100514910 UniProtKB/TrEMBL
NCBI Gene CHURC1 ENTREZGENE
PANTHER PROTEIN CHURCHILL UniProtKB/TrEMBL
  PTHR31931 UniProtKB/TrEMBL
Pfam Churchill UniProtKB/TrEMBL
UniProt A0A4X1UBF4_PIG UniProtKB/TrEMBL
  A0A4X1UDV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UDW4 ENTREZGENE
  A0A8D1F017 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FCB8_PIG UniProtKB/TrEMBL
  F1SA59_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86689 ENTREZGENE