IQCE (IQ motif containing E) - Rat Genome Database

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Gene: IQCE (IQ motif containing E) Sus scrofa
Analyze
Symbol: IQCE
Name: IQ motif containing E
RGD ID: 14297665
Description: INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH brachydactyly (ortholog); genetic disease (ortholog); immunodeficiency 11A (ortholog); FOUND IN ciliary membrane (ortholog); extrinsic component of membrane (ortholog); plasma membrane protein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: IQ domain-containing protein E
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,861,200 - 1,903,036 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.131,861,487 - 1,903,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.232,124,748 - 2,168,376 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
IQCE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,861,200 - 1,903,036 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.131,861,487 - 1,903,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.232,124,748 - 2,168,376 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IQCE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl72,558,972 - 2,614,733 (+)EnsemblGRCh38hg38GRCh38
GRCh3872,558,978 - 2,614,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3772,598,613 - 2,654,362 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,565,158 - 2,620,894 (+)NCBINCBI36hg18NCBI36
Build 3472,371,872 - 2,423,779NCBI
Celera72,567,993 - 2,623,218 (+)NCBI
Cytogenetic Map7p22.3NCBI
HuRef72,517,599 - 2,572,724 (+)NCBIHuRef
CHM1_172,598,231 - 2,653,765 (+)NCBICHM1_1
CRA_TCAGchr7v272,646,544 - 2,702,212 (+)NCBI
Iqce
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,648,308 - 140,688,158 (-)NCBIGRCm39mm39
GRCm39 Ensembl5140,647,582 - 140,688,133 (-)Ensembl
GRCm385140,662,553 - 140,702,403 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,661,827 - 140,702,378 (-)EnsemblGRCm38mm10GRCm38
MGSCv375141,139,459 - 141,178,332 (-)NCBIGRCm37mm9NCBIm37
MGSCv365140,915,979 - 140,954,852 (-)NCBImm8
Celera5137,723,918 - 137,762,791 (-)NCBICelera
Cytogenetic Map5G2NCBI
Iqce
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21213,943,290 - 13,982,708 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1213,943,487 - 13,982,693 (+)Ensembl
Rnor_6.01216,030,607 - 16,069,872 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,857,805 - 16,067,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,028,202 - 18,067,110 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,414,172 - 14,451,362 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11214,442,250 - 14,468,742 (+)NCBI
Celera1215,703,595 - 15,742,833 (+)NCBICelera
Cytogenetic Map12q11NCBI
Iqce
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546012,676,649 - 12,724,613 (+)NCBIChiLan1.0ChiLan1.0
IQCE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.172,913,345 - 2,968,619 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl72,913,549 - 2,964,046 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v072,818,723 - 2,874,505 (+)NCBIMhudiblu_PPA_v0panPan3
IQCE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1614,538,693 - 14,579,095 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl614,532,181 - 14,577,435 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha615,995,640 - 16,041,843 (+)NCBI
ROS_Cfam_1.0614,659,001 - 14,705,205 (+)NCBI
UMICH_Zoey_3.1614,462,989 - 14,509,190 (+)NCBI
UNSW_CanFamBas_1.0614,391,420 - 14,437,616 (+)NCBI
UU_Cfam_GSD_1.0614,677,263 - 14,723,464 (+)NCBI
Iqce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344142,661,793 - 142,711,886 (+)NCBI
SpeTri2.0NW_004936823340,959 - 389,593 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IQCE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12818,963,871 - 19,014,509 (+)NCBI
ChlSab1.1 Ensembl2818,963,944 - 19,019,009 (+)Ensembl
Vero_WHO_p1.0NW_0236660902,752,561 - 2,807,874 (-)NCBI
Iqce
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474030,299,266 - 30,348,572 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000043199   ⟹   ENSSSCP00000040183
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl31,861,200 - 1,902,975 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052196   ⟹   ENSSSCP00000043553
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl31,861,200 - 1,902,975 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053404   ⟹   ENSSSCP00000045202
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl31,861,200 - 1,903,036 (-)Ensembl
RefSeq Acc Id: XM_013992267   ⟹   XP_013847721
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.131,861,487 - 1,903,107 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013847721 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013847721   ⟸   XM_013992267
- Sequence:
RefSeq Acc Id: ENSSSCP00000043553   ⟸   ENSSSCT00000052196
RefSeq Acc Id: ENSSSCP00000045202   ⟸   ENSSSCT00000053404
RefSeq Acc Id: ENSSSCP00000040183   ⟸   ENSSSCT00000043199


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007568 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070010208 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000040183 UniProtKB/TrEMBL
  ENSSSCP00000043553 UniProtKB/TrEMBL
  ENSSSCP00000045202 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070016541 UniProtKB/TrEMBL
  ENSSSCP00070016548 UniProtKB/TrEMBL
  ENSSSCP00070016570 UniProtKB/TrEMBL
  ENSSSCP00070016583 UniProtKB/TrEMBL
  ENSSSCP00070016618 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043199 UniProtKB/TrEMBL
  ENSSSCT00000052196 UniProtKB/TrEMBL
  ENSSSCT00000053404 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070019904 UniProtKB/TrEMBL
  ENSSSCT00070019918 UniProtKB/TrEMBL
  ENSSSCT00070019948 UniProtKB/TrEMBL
  ENSSSCT00070019962 UniProtKB/TrEMBL
  ENSSSCT00070019999 UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene IQCE ENTREZGENE
Pfam PF00612 UniProtKB/TrEMBL
PROSITE PS50096 UniProtKB/TrEMBL
SMART SM00015 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287A8P1_PIG UniProtKB/TrEMBL
  A0A287AI28_PIG UniProtKB/TrEMBL
  A0A287AMQ7_PIG UniProtKB/TrEMBL
  A0A4X1TIJ2_PIG UniProtKB/TrEMBL
  A0A4X1TKE8_PIG UniProtKB/TrEMBL
  A0A4X1TKL0_PIG UniProtKB/TrEMBL
  A0A4X1TMY4_PIG UniProtKB/TrEMBL
  A0A4X1TN40_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89188 ENTREZGENE