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Gene: NR5A1 (nuclear receptor subfamily 5 group A member 1) Sus scrofa

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Symbol:

NR5A1

Name:

nuclear receptor subfamily 5 group A member 1

RGD ID:

14268903

Description:

ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN calcineurin-mediated signaling (ortholog); female gonad development (ortholog); hormone-mediated signaling pathway (ortholog); ASSOCIATED WITH 46 XX gonadal dysgenesis (ortholog); 46, XY Disorders of Sex Development (ortholog); 46,XX sex reversal 4 (ortholog); FOUND IN nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

adrenal 4-binding protein; fushi tarazu factor homolog 1; SF-1; steroid hormone receptor Ad4BP; steroidogenic factor 1; steroidogenic factor-1 SF-1; STF-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	265,284,493 - 265,311,417 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	265,284,491 - 265,311,547 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	299,123,683 - 299,135,326 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	1	q210-q211	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
NR5A1	Pig	gonadal dysgenesis	treatment	ISO	RGD:68350	9068941		RGD	PMID:16467257\|REF_RGD_ID:12904919
NR5A1	Pig	Zellweger syndrome		ISO	RGD:68493	9068941	DNA:deletions, missense mutations, nonsense mutation: exon:multiple	RGD	PMID:16141001\|REF_RGD_ID:11062374

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
NR5A1	Pig	46, XY Disorders of Sex Development		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: 46,XY disorder of sex development	ClinVar	PMID:17694559\|PMID:20887963\|PMID:25741868\|PMID:25989977\|PMID:26260161\|PMID:27899157\|PMID:28492532\|PMID:29265478\|PMID:30425642\|PMID:31513305
NR5A1	Pig	46,XX sex reversal 4		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: 46,XX sex reversal 4	ClinVar	PMID:11932325\|PMID:22549935\|PMID:25741868\|PMID:26523528\|PMID:27378692\|PMID:27490115\|PMID:27610946\|PMID:27855412\|PMID:28033660\|PMID:28492532
NR5A1	Pig	46,XY sex reversal 3		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: 46,XY sex reversal 3 \| ClinVar Annotator: match by term: more ...	ClinVar	PMID:11932325\|PMID:15070943\|PMID:15472171\|PMID:15579739\|PMID:17200175\|PMID:17576681\|PMID:17694559\|PMID:18414213\|PMID:19246354\|PMID:20887963\|PMID:21691958\|PMID:22028768\|PMID:22474171\|PMID:22549935\|PMID:25122490\|PMID:25326637\|PMID:25741868\|PMID:25989977\|PMID:26523528\|PMID:27169744\|PMID:27378692\|PMID:27490115\|PMID:27610946\|PMID:27855412\|PMID:27899157\|PMID:28033660\|PMID:28492532\|PMID:29095814\|PMID:29935645\|PMID:30425642\|PMID:31513305\|PMID:31745530\|PMID:31852928\|PMID:32738419\|PMID:33202802\|PMID:33351340\|PMID:35432193\|PMID:35690514\|PMID:35935368\|PMID:36572623\|PMID:38128121\|PMID:9536098
NR5A1	Pig	disorder of sexual development		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Disorder of sexual differentiation	ClinVar	PMID:25741868\|PMID:28492532\|PMID:31513305\|PMID:31852928\|PMID:35432193\|PMID:35935368
NR5A1	Pig	genetic disease		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:28492532
NR5A1	Pig	hereditary breast ovarian cancer syndrome		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure	ClinVar	PMID:25741868\|PMID:28492532
NR5A1	Pig	hereditary breast ovarian cancer syndrome		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure \| ClinVar Annotator: match by more ...	ClinVar	PMID:22028768\|PMID:22907560\|PMID:25122490\|PMID:25741868\|PMID:27169744\|PMID:28492532\|PMID:30425642
NR5A1	Pig	hereditary breast ovarian cancer syndrome		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure \| ClinVar Annotator: match by more ...	ClinVar	PMID:22028768\|PMID:22907560\|PMID:23154282\|PMID:25122490\|PMID:25383892\|PMID:25741868\|PMID:27169744\|PMID:28492532
NR5A1	Pig	male infertility		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Male infertility	ClinVar	PMID:17940071\|PMID:20887963\|PMID:25741868\|PMID:25989977\|PMID:28492532\|PMID:29935645\|PMID:30067310\|PMID:32655042\|PMID:35690514\|PMID:36572623
NR5A1	Pig	primary ovarian insufficiency 16		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure	ClinVar	PMID:22028768\|PMID:22907560\|PMID:25122490\|PMID:25741868\|PMID:27169744\|PMID:28492532\|PMID:30425642
NR5A1	Pig	primary ovarian insufficiency 7		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: ADRENAL INSUFFICIENCY, NR5A1-RELATED \| ClinVar Annotator: match by term: Premature more ...	ClinVar	PMID:11038323\|PMID:11932325\|PMID:17940071\|PMID:19246354\|PMID:25741868\|PMID:26523528\|PMID:27855412\|PMID:28492532\|PMID:30067310\|PMID:32655042\|PMID:34008892\|PMID:36572623
NR5A1	Pig	spermatogenic failure 1		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Oligosynaptic infertility	ClinVar	PMID:10369247\|PMID:11038323\|PMID:12907682\|PMID:16199547\|PMID:17576681\|PMID:17694559\|PMID:17940071\|PMID:19246354\|PMID:19269353\|PMID:19439508\|PMID:20887963\|PMID:22028768\|PMID:22100173\|PMID:22474171\|PMID:22549935\|PMID:22907560\|PMID:23543655\|PMID:23729601\|PMID:24591553\|PMID:25122490\|PMID:25741868\|PMID:25989977\|PMID:27169744\|PMID:27378692\|PMID:27490115\|PMID:27610946\|PMID:27899157\|PMID:28032338\|PMID:28033660\|PMID:28130116\|PMID:28326187\|PMID:28492532\|PMID:28938747\|PMID:29027299\|PMID:29095814\|PMID:29190620\|PMID:29265478\|PMID:29582157\|PMID:29935645\|PMID:30067310\|PMID:30406445\|PMID:30425642\|PMID:31513305\|PMID:31831369\|PMID:32008008\|PMID:32655042\|PMID:32738419\|PMID:32985417\|PMID:33351340\|PMID:34095689\|PMID:34461970\|PMID:35690514\|PMID:36572623\|PMID:36745277\|PMID:38128121\|PMID:9536098
NR5A1	Pig	spermatogenic failure 3		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Non-obstructive azoospermia	ClinVar	PMID:18414213\|PMID:20887963\|PMID:25741868\|PMID:25989977\|PMID:28492532\|PMID:35690514\|PMID:36572623
NR5A1	Pig	spermatogenic failure 57		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Male infertility with azoospermia or oligozoospermia due to single gene more ...	ClinVar	PMID:10369247\|PMID:11038323\|PMID:12907682\|PMID:19246354\|PMID:20887963\|PMID:22100173\|PMID:23543655\|PMID:25741868\|PMID:28492532
NR5A1	Pig	spermatogenic failure 8		ISO	RGD:68493	8554872	ClinVar Annotator: match by term: Spermatogenic failure 8	ClinVar	PMID:20887963\|PMID:25741868\|PMID:25989977\|PMID:28492532\|PMID:35690514\|PMID:36572623

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
NR5A1	Pig	46 XX gonadal dysgenesis		ISO	RGD:68493	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:19246354
NR5A1	Pig	46,XY complete gonadal dysgenesis		ISO	RGD:68493	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:10369247\|PMID:11932325\|PMID:15070943
NR5A1	Pig	Adrenal Insufficiency		ISO	RGD:68493	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:10369247
NR5A1	Pig	endometriosis		ISO	RGD:68493	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:17519303
NR5A1	Pig	Ovarian Neoplasms		ISO	RGD:68493	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:23291911
NR5A1	Pig	primary ovarian insufficiency		ISO	RGD:68493	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:19246354

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
NR5A1	Pig	hypogonadotropic hypogonadism		ISO	RGD:68494	9068941		MouseDO

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
NR5A1	Pig	46,XX sex reversal 4		ISO	RGD:68493	7240710		OMIM
NR5A1	Pig	46,XY sex reversal 3		ISO	RGD:68493	7240710		OMIM
NR5A1	Pig	primary ovarian insufficiency 7		ISO	RGD:68493	7240710		OMIM
NR5A1	Pig	spermatogenic failure 8		ISO	RGD:68493	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
NR5A1	Pig	adrenal gland development	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	calcineurin-mediated signaling		ISO	RGD:68350	9068941		RGD	PMID:25057110\|REF_RGD_ID:12904895
NR5A1	Pig	female gonad development		ISO	RGD:68350	9068941		RGD	PMID:12865342\|REF_RGD_ID:1598968
NR5A1	Pig	female gonad development	involved_in	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	female gonad development	involved_in	ISS	UniProtKB:Q13285	150520179		UniProt	GO_REF:0000024
NR5A1	Pig	hormone metabolic process	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	hormone-mediated signaling pathway	involved_in	IBA	FB:FBgn0001078\|PANTHER:PTN000639680\|RGD:68350	150520179		GO_Central	GO_REF:0000033
NR5A1	Pig	hormone-mediated signaling pathway		ISO	RGD:68350	9068941		RGD	PMID:25057110\|REF_RGD_ID:12904895
NR5A1	Pig	intracellular receptor signaling pathway	involved_in	IEA	GO:0004879	150520179		GOC	GO_REF:0000108
NR5A1	Pig	Leydig cell differentiation	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	luteinization	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	maintenance of protein location in nucleus	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	male gonad development	involved_in	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	male gonad development	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	male gonad development	involved_in	ISS	UniProtKB:Q13285	150520179		UniProt	GO_REF:0000024
NR5A1	Pig	male sex determination	involved_in	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	negative regulation of female gonad development	involved_in	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	positive regulation of DNA-templated transcription	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	positive regulation of DNA-templated transcription	involved_in	ISO	RGD:68494	9068941	PMID:19301398	UniProt	PMID:19301398
NR5A1	Pig	positive regulation of gene expression	involved_in	ISS	UniProtKB:Q13285	150520179		UniProt	GO_REF:0000024
NR5A1	Pig	positive regulation of gene expression	involved_in	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	positive regulation of male gonad development		ISO	RGD:68350	9068941		RGD	PMID:16467257\|REF_RGD_ID:12904919
NR5A1	Pig	positive regulation of male gonad development	involved_in	IEA	UniProtKB:P33242\|UniProtKB:Q13285\|ensembl:ENSMUSP00000108504\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	positive regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	positive regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	regulation of DNA-templated transcription	involved_in	IEA	ARBA:ARBA00028138	150520179		UniProt	GO_REF:0000117
NR5A1	Pig	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR001628\|InterPro:IPR013088	150520179		InterPro	GO_REF:0000002
NR5A1	Pig	regulation of DNA-templated transcription	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	regulation of transcription by RNA polymerase II	involved_in	IBA	FB:FBgn0001078\|MGI:1346833\|MGI:1346834\|PANTHER:PTN000639680\|UniProtKB:O00482\|UniProtKB:Q13285\|WB:WBGene00003623\|ZFIN:ZDB-GENE-010504-1	150520179		GO_Central	GO_REF:0000033
NR5A1	Pig	regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	response to gonadotropin-releasing hormone		ISO	RGD:68350	9068941		RGD	PMID:17344471\|REF_RGD_ID:12910563
NR5A1	Pig	Sertoli cell differentiation	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	sex determination	involved_in	ISS	UniProtKB:Q13285	150520179		UniProt	GO_REF:0000024
NR5A1	Pig	sex determination	involved_in	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	tissue development	involved_in	IBA	MGI:1346833\|MGI:1346834\|PANTHER:PTN000639680\|ZFIN:ZDB-GENE-990415-79	150520179		GO_Central	GO_REF:0000033
NR5A1	Pig	tissue development	acts_upstream_of_or_within	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	transcription by RNA polymerase II		ISO	RGD:68350	9068941		RGD	PMID:12697699\|REF_RGD_ID:1624302

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
NR5A1	Pig	cytosol	located_in	IEA	UniProtKB:F1D8R8\|UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	nucleoplasm	located_in	IEA	UniProtKB:F1D8R8\|UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
NR5A1	Pig	nucleus	located_in	IEA	UniProtKB:P33242\|UniProtKB:Q13285\|ensembl:ENSMUSP00000108504\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	nucleus	located_in	ISS	UniProtKB:Q13285	150520179		HGNC-UCL	GO_REF:0000024
NR5A1	Pig	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
NR5A1	Pig	RNA polymerase II transcription regulator complex	part_of	IBA	MGI:1346833\|MGI:1346834\|PANTHER:PTN000639680	150520179		GO_Central	GO_REF:0000033
NR5A1	Pig	RNA polymerase II transcription regulator complex	part_of	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
NR5A1	Pig	chromatin binding	enables	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	DNA binding	enables	IEA	InterPro:IPR016355	150520179		InterPro	GO_REF:0000002
NR5A1	Pig	DNA binding	enables	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	DNA binding	enables	IEA	ARBA:ARBA00029224	150520179		UniProt	GO_REF:0000117
NR5A1	Pig	DNA binding	enables	ISS	UniProtKB:Q13285	150520179		HGNC-UCL	GO_REF:0000024
NR5A1	Pig	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	150520179		UniProt	GO_REF:0000043
NR5A1	Pig	DNA-binding transcription factor activity		ISO	RGD:68350	9068941		RGD	PMID:12697699\|REF_RGD_ID:1624302
NR5A1	Pig	DNA-binding transcription factor activity	enables	IEA	InterPro:IPR001628	150520179		InterPro	GO_REF:0000002
NR5A1	Pig	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	double-stranded DNA binding		ISO	RGD:68350	9068941		RGD	PMID:12697699\|REF_RGD_ID:1624302
NR5A1	Pig	enzyme binding	enables	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	lipid binding	enables	IEA	UniProtKB-KW:KW-0446	150520179		UniProt	GO_REF:0000043
NR5A1	Pig	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
NR5A1	Pig	nuclear receptor activity	enables	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	nuclear receptor activity	enables	IEA	InterPro:IPR016355	150520179		InterPro	GO_REF:0000002
NR5A1	Pig	phospholipid binding	enables	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:O60869	9068941	PMID:10567391	UniProt	PMID:10567391
NR5A1	Pig	protein binding	enables	ISO	PR:Q04886\|PR:Q04887	9068941	PMID:12732652	MGI	PMID:12732652
NR5A1	Pig	protein binding	enables	ISO	PR:Q99ME7	9068941	PMID:12651892	MGI	PMID:12651892
NR5A1	Pig	protein binding	enables	ISO	PR:P23708	9068941	PMID:12730328	MGI	PMID:12730328
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:P16333	9068941	PMID:17474147, PMID:39009827	IntAct	PMID:17474147\|PMID:39009827
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:P40937\|UniProtKB:P51843\|UniProtKB:P61024\|UniProtKB:Q53TS8\|UniProtKB:Q8WW24\|UniProtKB:Q96HA8	9068941	PMID:32296183	IntAct	PMID:32296183
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:P51843	9068941	PMID:16709599, PMID:25910212	UniProt	PMID:16709599\|PMID:25910212
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:O43639\|UniProtKB:P51843	9068941	PMID:25416956	IntAct	PMID:25416956
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:Q13510\|UniProtKB:Q13510-2	9068941	PMID:22927646	IntAct	PMID:22927646
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:P36956	9068941	PMID:23610160	ParkinsonsUK-UCL	PMID:23610160
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:Q13510-2	9068941	PMID:22927646	UniProt	PMID:22927646
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:P43694	9068941	PMID:21220346	UniProt	PMID:21220346
NR5A1	Pig	protein binding	enables	ISO	UniProtKB:Q92830	9068941	PMID:17664281	UniProt	PMID:17664281
NR5A1	Pig	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IEA	UniProtKB:P33242\|ensembl:ENSMUSP00000108504	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IBA	MGI:1346833\|MGI:1346834\|PANTHER:PTN000639680	150520179		GO_Central	GO_REF:0000033
NR5A1	Pig	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	sequence-specific DNA binding		ISO	RGD:68350	9068941		RGD	PMID:12697699\|REF_RGD_ID:1624302
NR5A1	Pig	sequence-specific DNA binding	enables	IEA	InterPro:IPR001628	150520179		InterPro	GO_REF:0000002
NR5A1	Pig	sequence-specific DNA binding	enables	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	sequence-specific double-stranded DNA binding	enables	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	transcription coregulator binding	enables	IEA	UniProtKB:Q13285\|ensembl:ENSP00000362690	150520179		Ensembl	GO_REF:0000107
NR5A1	Pig	zinc ion binding	enables	IEA	InterPro:IPR001628\|InterPro:IPR013088	150520179		InterPro	GO_REF:0000002
NR5A1	Pig	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	150520179		UniProt	GO_REF:0000043

PMID:9154138	PMID:9724033	PMID:14681463	PMID:17145712	PMID:22301074	PMID:26055431	PMID:29378329	PMID:30032202

NR5A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	265,284,493 - 265,311,417 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	265,284,491 - 265,311,547 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	299,123,683 - 299,135,326 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	1	q210-q211	NCBI

NR5A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	124,481,236 - 124,507,399 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	124,481,236 - 124,507,420 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	127,243,515 - 127,269,678 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	126,283,336 - 126,309,520 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	124,323,069 - 124,349,253	NCBI
Celera	9	97,890,732 - 97,916,915 (-)	NCBI		Celera
Cytogenetic Map	9	q33.3	NCBI
HuRef	9	96,856,059 - 96,882,213 (-)	NCBI		HuRef
CHM1_1	9	127,392,508 - 127,418,653 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	136,679,465 - 136,705,624 (-)	NCBI		T2T-CHM13v2.0

Nr5a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	38,582,668 - 38,604,554 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	38,582,668 - 38,604,554 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	38,692,656 - 38,714,542 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	38,692,656 - 38,714,542 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	38,548,180 - 38,570,062 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	38,514,636 - 38,536,512 (-)	NCBI		MGSCv36	mm8
Celera	2	40,416,849 - 40,438,726 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	24.42	NCBI

Nr5a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	42,874,505 - 42,896,109 (-)	NCBI		GRCr8
mRatBN7.2	3	22,464,786 - 22,486,328 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	22,465,502 - 22,486,328 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	25,933,801 - 25,954,690 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	34,518,798 - 34,539,688 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	32,331,170 - 32,351,980 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	22,998,900 - 23,020,441 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	22,999,616 - 23,020,441 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	28,223,427 - 28,244,968 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	18,498,913 - 18,519,738 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	18,395,933 - 18,412,441 (-)	NCBI
Celera	3	20,898,726 - 20,919,551 (-)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

Nr5a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	3,632,220 - 3,654,375 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	3,632,248 - 3,654,367 (+)	NCBI	ChiLan1.0	ChiLan1.0

NR5A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	14,852,025 - 14,874,137 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	14,854,371 - 14,875,019 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	95,605,282 - 95,628,773 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	124,122,968 - 124,149,292 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	124,122,968 - 124,149,292 (-)	Ensembl	panpan1.1		panPan2

Nr5a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	192,970,909 - 193,007,215 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	12,739,439 - 12,763,734 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	12,739,445 - 12,763,729 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NR5A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	13,640,453 - 13,666,748 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	13,640,473 - 13,666,863 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	2,411,630 - 2,438,042 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nr5a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	10,605,877 - 10,626,386 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	10,603,504 - 10,626,259 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in NR5A1
782 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
1	5	3	2	2	2	5	3


RefSeq Transcripts	NM_214179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021082954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021082957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF006572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK398303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AP009124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU633730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01121244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U84399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000034748 ⟹ ENSSSCP00000047808

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	265,284,493 - 265,311,417 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000085383 ⟹ ENSSSCP00000074228

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	265,284,493 - 265,311,417 (-)	Ensembl

RefSeq Acc Id:

NM_214179 ⟹ NP_999344

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	265,285,298 - 265,308,179 (-)	NCBI

Sequence:

show sequence

TCTCTCAGTGTCTCTGTAACCCTCTCCTTCTGTCTGATATGTCCCAGTTTTCACTTGTCTCTCGGTGTTTCAATCTGTCTCTACCACTGTGTCGCGGCTCTACCGCTGTCTCTCCCAGGTTTTCTCTT
TGGGGCCTCTGTCTCTCGGGCGTCTCTGATTCATAGTCTCTCTCTCTCTCATATCTCTCAGCTCTCTATCCCTAGCCCCTCTCTGTCTCTGTCTCTACCTCTGTCTCTCTGTCTTTCTTGTCCCCAGC
AGGATTTCCTGCGTCCGCATCAATAAGTCTCTGTCACTCTCGAATTTTCGTTGTCTCTGTTGCCCCCGGGGTACTCTCTCTGATAGGCAGCGGTGGTCGGTTTCTGCCCATCTGTCTATCTCTCTCAG
ACCCTGCCTCCCTCGAACCTGCCCGATCCCCTGAATACTTGGGCTCCACTCCCCCTGAGTTTCCTCGCCGGGGGAGCCCATCTCCTTTTCTCAGAATCCGGGGTTTTGTTCTCAACTGAACGAATCCA
GTCAAGGCGTAATCAATCAGAGAGTCCTGATCGGCGCGCAGGCCGGCCCAGGAGGAGCCCCCCAGGAGGGTTGGAGAGAGGGAGGGGCTGGAGCACAGGGACAGAGTCAGCAAGGACCAGCATGGAGC
TGCTCTGGCACATGTGGTGCCGGCTGGCTGCTCAGGGTGCTCTAACGGGTGCCCTTGACCACAGCGTGCAGCTGTGATGGGGCCACAGGCCAGACCCATGAAGAGGGTGCCATGGGGCGTAGGGTGCG
CCGTGGTGCACGACCTGCCCAACCGAGGTCCCCTGTGCTGCCGGTCGCGGTCCCGGCGGCAGTGACCCTCTCTTCCATCCACAGGTGGACGCCGCGGGCATGGACTATTGGTACGACGAGGACCTGGA
CGAACTGTGCCCCGTGTGTGGGGACAAGGTGTCTGGCTACCACTACGGGCTGCTCACATGCGAGACGTGTAAGGGCTTCTTCAAGCGCACGGTGCAGAACAACAAGCACTACACGTGCACCGAGAGTC
AGAGCTGCAAGATCGACAAGACGCAGCGCAAGCGCTGTCCCTTCTGCCGCTTCCAGAAGTGCCTGACGGTGGGGATGCGCCTGGAAGCCGTGCGTGCTGACGGCATGCGGGGTGGCCGGAACAAGTTT
GGGCCCATGTACAAGCGGGACCGGGCCCTGAAGCAGCAAAAGAAGGCACAGATTCGAGCCAATGGCTTCAAGCTGGAAACAGGCCCCCCAATGGGGGTGGCCCCACCACCGCCTCCCCCGCCGGACTA
CATGCTGCCCCCTGGCCTGCATGCACCTGAGCCCAAGGGCCTGGCCGCTGGTCCACCTACTGGGCCACTGGGCGACTTTGGGGCTCCGACGCTGCCGATGGCTGTACCCAGCGCCCACGGGCCACTGG
CTGGCTACCTCTATCCTGCCTTCCCTGGCCGCGCCATCAAGTCTGAGTACCCGGAGCCCTACGCCAGCCCCCCGCAGCCCGGGCCGCCCTACGGCTACCCAGAGCCCTTCTCCGGAGGGCCTGGGGTG
CCCGAGCTCATTGTGCAGCTGCTGCAGCTGGAGCCGGACGAGGACCAGGTACGGGCGCGCATCGTGGGCTGCCTGCAGGAACCAGCCAAAGGCCGCCCCGACCAGCCTGCGCCCTTCAGCCTCCTGTG
CAGGATGGCCGACCAGACCTTCATTTCCATCGTGGACTGGGCGCGCAGGTGCATGGTCTTCAAGGAGCTGGAGGTGGCCGATCAGATGACACTGCTGCAGAACTGCTGGAGTGAGCTGCATGTGTTCG
ACCACATCTACCGCCAGATCCAGCATGGCAAGGAGGGCAGCATCCTGCTGGTCACCGGGCAGGAGGTGGAGCTGACCACGGTGGCTGCCCAGGCAGGCTCCCTGCTGCATGGCCTGGTGCTGCGGGCA
CAGGAGCTGGTGCTGCAGCTGCATGCGCTGCAGCTGGACCGCCAGGAGTTCGTCTGCCTCAAGTTCCTCATTCTCTTCAGCCTGGATGTGAAGTTTCTGAATAACCACAGCCTGGTCAAGGACGCTCA
GGAGAAGGCGAACGCTGCCCTGCTTGATTACACCCTGTGCCACTACCCGCACTGCGGGGACAAATTCCAGCAGCTGCTGCTGTGCCTCGTGGAGGTGCGGGCGCTGAGCATGCAGGCCAAGGAATACC
TGTACCACAAGCACCTGGGCAACGAGATGCCCCGAAACAACCTGCTCATTGAGATGCTGCAGGCCAAGCAGACTTGAGCTTGGGCCCGAGGTGGGGGAGGGGGGCGGGCCGGGGCTTGGGGAGGGGCC
GCAGCACCCCCACGGCCTCCGGGTGGTTTATTTTATTATGCGGACCCAGGACCCCACCACGGAGGCCCCTGCCCCTGAGCCCTCTGAAGCTCTGTGTTTGGGAAGGTGGGTGAAAGGTGGGCAGGGCT
GGCTGAGGTGGGGTGGTCCCCCCCACTGGCACTTGGCACCCACTCAAAGTGGCCCAAGGAGGTGGCTGCTAACCACTCCCTCCCTCTCCCCACCCCCCCGCCCCCAGCTGTCTGTCCTGGGGACTGGA
GCACAGGCCCGGGGAGGAGGTTTGGATTCCCCAGTGGCCTCCGTGTCCTTTGAGTCAGAGGTCACTGTCCCCTCTCTCCTGCAGACAGAAGCAGAGGGAGTTGAGCAGACAGCAGCCGGGGGGAGCAG
GGAGGGCTTCCAGAATTTCCTCCCAGAAGCCAGGAGGGCCGCCCTCTGTTTTGTAAACCAGGGCTAACAAGAGTCTGCGAAATTAGACAAGGGACTGGTGGAGCCTAGAGGACACTGGGAGAACTGGT
CAGGCCCCGACGAACCCCCTGGGTCAACCTTCTACCCATCTGACTCCTGCAGGGGGGATCTTGGATGTGTTCTCTGAAAAGAATTTTGCTACAATCATCTTTCTAACCCTCTCCCAGC

hide sequence

RefSeq Acc Id:

XM_021082954 ⟹ XP_020938613

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	265,284,491 - 265,311,547 (-)	NCBI

Sequence:

show sequence

AGAGAAACACCAACAAAGAAGGAGAGAGGCCTGCAGAGTCACGTGGGGGCAGAGACCAATTGGGCCTCCGGTGGCCCCCCCACCCAGGGCGGGGAGGAGGAGGAGGAGGACGGACGGACAGGGCCAGC
CTACTGTCCGCCCGCCGCCCGCTGTGGCGTGAAGGAGTTCTTGTGTGCCCACGGTCGCCACTGCCCCACCTGGGCTGCTGGAGCTTCCCCTTGGAGCCCCCGGTGCCCACTGTCCACCACCATCCAGC
GTGAGAGCTCGCCTTCCGCTCCGTGGACGCCGCGGGCATGGACTATTCCTACGACGAGGACCTGGACGAACTGTGCCCCGTGTGTGGGGACAAGGTGTCTGGCTACCACTACGGGCTGCTCACATGCG
AGAGCTGTAAGGGCTTCTTCAAGCGCACGGTGCAGAACAACAAGCACTACACGTGCACCGAGAGTCAGAGCTGCAAGATCGACAAGACGCAGCGCAAGCGCTGTCCCTTCTGCCGCTTCCAGAAGTGC
CTGACGGTGGGGATGCGCCTGGAAGCCGTGCGTGCTGACCGCATGCGGGGTGGCCGGAACAAGTTTGGGCCCATGTACAAGCGGGACCGGGCCCTGAAGCAGCAGAAGAAGGCACAGATTCGAGCCAA
TGGCTTCAAGCTGGAGACAGGCCCCCCAATGGGGGTGGCCCCACCACCGCCTCCCCCGCCGGACTACATGCTGCCCCCTGGCCTGCATGCACCTGAGCCCAAGGGCCTGGCCGCTGGTCCACCTACTG
GGCCACTGGGCGACTTTGGGGCTCCGACGCTGCCGATGGCTGTACCCAGCGCCCACGGGCCACTGGCTGGCTACCTCTATCCTGCCTTCCCTGGCCGCGCCATCAAGTCTGAGTACCCGGAGCCCTAC
GCCAGCCCCCCGCAGCCCGGGCCGCCCTACGGCTACCCAGAGCCCTTCTCCGGAGGGCCTGGCGTGCCCGAGCTCATCGTGCAGCTGCTGCAGCTGGAGCCGGACGAGGACCAGGTACGGGCGCGCAT
CGTGGGCTGCCTGCAGGAACCAGCCAAAGGCCGCCCCGACCAGCCTGCGCCCTTCAGCCTCCTGTGCAGGATGGCCGACCAGACCTTCATTTCCATCGTGGACTGGGCGCGCAGGTGCATGGTCTTCA
AGGAGCTGGAGGTGGCCGATCAGATGACACTGCTGCAGAACTGCTGGAGTGAGCTGCTAGTGTTCGACCACATCTACCGCCAGATCCAGCATGGCAAGGAGGGCAGCATCCTGCTGGTCACCGGGCAG
GAGGTGGAGCTGACCACGGTGGCTGCCCAGGCAGGCTCCCTGCTGCATGGCCTGGTGCTGCGGGCACAGGAGCTGGTGCTGCAGCTGCATGCGCTGCAGCTGGACCGCCAGGAGTTCGTCTGCCTCAA
GTTCCTCATTCTCTTCAGCCTGGATGTGAAGTTTCTGAATAACCACAGCCTGGTCAAGGACGCTCAGGAGAAGGCGAACGCTGCCCTGCTTGATTACACCCTGTGCCACTACCCGCACTGCGGGGACA
AATTCCAGCAGCTGCTGCTGTGCCTCGTGGAGGTGCGGGCGCTGAGCATGCAGGCCAAGGAATACCTGTACCACAAGCACCTGGGCAACGAGATGCCCCGAAACAACCTGCTCATTGAGATGCTGCAG
GCCAAGCAGACTTGAGCTTGGGCCCGAGGTGGGGGAGGGGGGCGGGCCGGGGCTTGGGGAGGGGCCGCAGCACCCCCACGGCCTCCGGGTGGTTTATTTTATTATGCGGACCCAGGACCCCACCACGG
AGGCCCCTGCCCCTGAGCCCTCTGAAGCTCTGTGTTTGGGAAGGTGGGTGAAAGGTGGGCAGGGCCTGGCTGAGGTGGGGTGGTCCCCCCCACTGGCACTTGGCATCCACTCAAAGTGGCCCAAGGAG
GTGGCTGCTAACCACTCCCTCCCTCTCCCCACCCCCCCGCCCCCAGCTGTCTGTCCTGGGGACTGGAGCACAGGCCCGGGGAGGAGGTTTGGATTCCCCAGTGGGCCTCCGTGTCCTTTGAGTCAGAG
GTCATCTGTCCCCTCTCTCCTGCAGACAGAAGCAGAGGGAGTTGAGCAGACAGCAGCCGGGGGGAGCAGGGAGGGCTTCCAGAATTTCCTCCCAGAAGCCAGGAGGGCCGCCCTCTGTTTTGTAAACC
AGGGCTAACAAGAGTCTGCGAAATTAGACAAGGGACTGGTGGAGCCTAGAGGACACTGGGAGAACTGGTCAGGCCCCGACGACCCCCTCCCTCAACCTTCTACCCATCTGACTCCTGCAGGGGGGATC
TTGGATGTGTTCTCTGAAAAGAATTTTGCTACAATCATCTTTCTAACCCTCTCCCAGCAGGGGAGAACCTGGGCACATGCCAGCCCCACCCACAGGTGGCCCATCCAGGCTGGTATTTGTCTGCAAGG
CTGTAGTCAAGAAGTTGCTTGTTTGTTTGTTTCTGTTTTATTTGTCTTTTAATTCAGATACTCCTTGAAAGGTGTGTATGTGGACGGGCAGGGGGCAGATCTGAGGATCGAGGCTGGGATGTGGGGCT
TAGCACCAAATACAGTCCCTGGCTCCCCCAAACACCCTCATACCAAGCACCCCACGGTTGGTGCTGGGTCGTTATTTCTGAGCCCCCACTCCAATCCAGAGAAGAACTCCCCCCTCCTGCGCCGCCAC
TAGATGAACAGCAGGATGGCTTGTGGGGGGCTCGGAGTCTCTGTGGGTGGGAATACGGTGACCTTGGGGACAGTATCTGGATTCCAGATCAGGGACATTGCTGATGAGCCCTCTTTCACTGGCCCCAT
CCCATTGGGTCCCTTGCTTCAAACCCTTGATGCGGGGCCTCAACGCCTGTCCTATGTCCTGAAAGACACTCTCCGGGGCCAGGCCTAAGGGACAGTCCTCTGTCTCCGGGCCGGGCGTCTGCTGTCTG
TCCTGCTTTCATGTTGCCGCTGCAGCTTGCACTGAGCCCGCCTAGTTGGAGATGACTGGGCATTCCTGCCCCCGCCTTCCACCACCCCATCTCAGTCCCTACTCCTCCCCCCGAAACCTGTGCCCTGG
CCAGGCTGGAGACCCCCAGCCCCCAAACGAGAAGTGCCCTTAAGAACCCCCCAGCCCTCGCAGTCCTGGAATAAATTTTGCAATTAGTTTCCAGCTA

hide sequence

RefSeq Acc Id:

XM_021082957 ⟹ XP_020938616

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	265,284,491 - 265,308,746 (-)	NCBI

Sequence:

show sequence

GTGCGGGGCTCGCGCGGGCGGGACGCGGGGCGCTGCTGCTCGCAGGAGCGGCCAGGTGGACGCCGCGGGCATGGACTATTCCTACGACGAGGACCTGGACGAACTGTGCCCCGTGTGTGGGGACAAGG
TGTCTGGCTACCACTACGGGCTGCTCACATGCGAGAGCTGTAAGGGCTTCTTCAAGCGCACGGTGCAGAACAACAAGCACTACACGTGCACCGAGAGTCAGAGCTGCAAGATCGACAAGACGCAGCGC
AAGCGCTGTCCCTTCTGCCGCTTCCAGAAGTGCCTGACGGTGGGGATGCGCCTGGAAGCCGTGCGTGCTGACCGCATGCGGGGTGGCCGGAACAAGTTTGGGCCCATGTACAAGCGGGACCGGGCCCT
GAAGCAGCAGAAGAAGGCACAGATTCGAGCCAATGGCTTCAAGCTGGAGACAGGCCCCCCAATGGGGGTGGCCCCACCACCGCCTCCCCCGCCGGACTACATGCTGCCCCCTGGCCTGCATGCACCTG
AGCCCAAGGGCCTGGCCGCTGGTCCACCTACTGGGCCACTGGGCGACTTTGGGGCTCCGACGCTGCCGATGGCTGTACCCAGCGCCCACGGGCCACTGGCTGGCTACCTCTATCCTGCCTTCCCTGGC
CGCGCCATCAAGTCTGAGTACCCGGAGCCCTACGCCAGCCCCCCGCAGCCCGGGCCGCCCTACGGCTACCCAGAGCCCTTCTCCGGAGGGCCTGGCGTGCCCGAGCTCATCGTGCAGCTGCTGCAGCT
GGAGCCGGACGAGGACCAGGTACGGGCGCGCATCGTGGGCTGCCTGCAGGAACCAGCCAAAGGCCGCCCCGACCAGCCTGCGCCCTTCAGCCTCCTGTGCAGGATGGCCGACCAGACCTTCATTTCCA
TCGTGGACTGGGCGCGCAGGTGCATGGTCTTCAAGGAGCTGGAGGTGGCCGATCAGATGACACTGCTGCAGAACTGCTGGAGTGAGCTGCTAGTGTTCGACCACATCTACCGCCAGATCCAGCATGGC
AAGGAGGGCAGCATCCTGCTGGTCACCGGGCAGGAGGTGGAGCTGACCACGGTGGCTGCCCAGGCAGGCTCCCTGCTGCATGGCCTGGTGCTGCGGGCACAGGAGCTGGTGCTGCAGCTGCATGCGCT
GCAGCTGGACCGCCAGGAGTTCGTCTGCCTCAAGTTCCTCATTCTCTTCAGCCTGGATGTGAAGTTTCTGAATAACCACAGCCTGGTCAAGGACGCTCAGGAGAAGGCGAACGCTGCCCTGCTTGATT
ACACCCTGTGCCACTACCCGCACTGCGGGGACAAATTCCAGCAGCTGCTGCTGTGCCTCGTGGAGGTGCGGGCGCTGAGCATGCAGGCCAAGGAATACCTGTACCACAAGCACCTGGGCAACGAGATG
CCCCGAAACAACCTGCTCATTGAGATGCTGCAGGCCAAGCAGACTTGAGCTTGGGCCCGAGGTGGGGGAGGGGGGCGGGCCGGGGCTTGGGGAGGGGCCGCAGCACCCCCACGGCCTCCGGGTGGTTT
ATTTTATTATGCGGACCCAGGACCCCACCACGGAGGCCCCTGCCCCTGAGCCCTCTGAAGCTCTGTGTTTGGGAAGGTGGGTGAAAGGTGGGCAGGGCCTGGCTGAGGTGGGGTGGTCCCCCCCACTG
GCACTTGGCATCCACTCAAAGTGGCCCAAGGAGGTGGCTGCTAACCACTCCCTCCCTCTCCCCACCCCCCCGCCCCCAGCTGTCTGTCCTGGGGACTGGAGCACAGGCCCGGGGAGGAGGTTTGGATT
CCCCAGTGGGCCTCCGTGTCCTTTGAGTCAGAGGTCATCTGTCCCCTCTCTCCTGCAGACAGAAGCAGAGGGAGTTGAGCAGACAGCAGCCGGGGGGAGCAGGGAGGGCTTCCAGAATTTCCTCCCAG
AAGCCAGGAGGGCCGCCCTCTGTTTTGTAAACCAGGGCTAACAAGAGTCTGCGAAATTAGACAAGGGACTGGTGGAGCCTAGAGGACACTGGGAGAACTGGTCAGGCCCCGACGACCCCCTCCCTCAA
CCTTCTACCCATCTGACTCCTGCAGGGGGGATCTTGGATGTGTTCTCTGAAAAGAATTTTGCTACAATCATCTTTCTAACCCTCTCCCAGCAGGGGAGAACCTGGGCACATGCCAGCCCCACCCACAG
GTGGCCCATCCAGGCTGGTATTTGTCTGCAAGGCTGTAGTCAAGAAGTTGCTTGTTTGTTTGTTTCTGTTTTATTTGTCTTTTAATTCAGATACTCCTTGAAAGGTGTGTATGTGGACGGGCAGGGGG
CAGATCTGAGGATCGAGGCTGGGATGTGGGGCTTAGCACCAAATACAGTCCCTGGCTCCCCCAAACACCCTCATACCAAGCACCCCACGGTTGGTGCTGGGTCGTTATTTCTGAGCCCCCACTCCAAT
CCAGAGAAGAACTCCCCCCTCCTGCGCCGCCACTAGATGAACAGCAGGATGGCTTGTGGGGGGCTCGGAGTCTCTGTGGGTGGGAATACGGTGACCTTGGGGACAGTATCTGGATTCCAGATCAGGGA
CATTGCTGATGAGCCCTCTTTCACTGGCCCCATCCCATTGGGTCCCTTGCTTCAAACCCTTGATGCGGGGCCTCAACGCCTGTCCTATGTCCTGAAAGACACTCTCCGGGGCCAGGCCTAAGGGACAG
TCCTCTGTCTCCGGGCCGGGCGTCTGCTGTCTGTCCTGCTTTCATGTTGCCGCTGCAGCTTGCACTGAGCCCGCCTAGTTGGAGATGACTGGGCATTCCTGCCCCCGCCTTCCACCACCCCATCTCAG
TCCCTACTCCTCCCCCCGAAACCTGTGCCCTGGCCAGGCTGGAGACCCCCAGCCCCCAAACGAGAAGTGCCCTTAAGAACCCCCCAGCCCTCGCAGTCCTGGAATAAATTTTGCAATTAGTTTCCAGC
TA

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Protein RefSeqs	NP_999344	(Get FASTA)	NCBI Sequence Viewer
	XP_020938613	(Get FASTA)	NCBI Sequence Viewer
	XP_020938616	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB71658	(Get FASTA)	NCBI Sequence Viewer
	AAC64209	(Get FASTA)	NCBI Sequence Viewer
	BAF45331	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000047808
	ENSSSCP00000047808.1
	ENSSSCP00015020094.1
	ENSSSCP00025018842.1
	ENSSSCP00030029440.1
	ENSSSCP00035044375.1
	ENSSSCP00040001286.1
	ENSSSCP00045040288.1
	ENSSSCP00055044488.1
	ENSSSCP00060047033.1
	ENSSSCP00065011774.1
	ENSSSCP00070027811.1
	ENSSSCP00070027821.1
	ENSSSCP00090031591
	ENSSSCP00105007201
	ENSSSCP00110018612
	ENSSSCP00115012258
	ENSSSCP00130048673
GenBank Protein	P79387	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_020938613 ⟸ XM_021082954
- Peptide Label:	isoform X1
- UniProtKB:	P79387 (UniProtKB/Swiss-Prot), A2BD07 (UniProtKB/Swiss-Prot), A0A8D1MPH9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGV APPPPPPPDYMLPPGLHAPEPKGLAAGPPTGPLGDFGAPTLPMAVPSAHGPLAGYLYPAFPGRAIKSEYPEPYASPPQPGPPYGYPEPFSGGPGVPELIVQLLQLEPDEDQVRARIVGCLQEPAKGRP DQPAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLHGLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFL NNHSLVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT hide sequence

RefSeq Acc Id:	XP_020938616 ⟸ XM_021082957
- Peptide Label:	isoform X1
- UniProtKB:	P79387 (UniProtKB/Swiss-Prot), A2BD07 (UniProtKB/Swiss-Prot), A0A8D1MPH9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGV APPPPPPPDYMLPPGLHAPEPKGLAAGPPTGPLGDFGAPTLPMAVPSAHGPLAGYLYPAFPGRAIKSEYPEPYASPPQPGPPYGYPEPFSGGPGVPELIVQLLQLEPDEDQVRARIVGCLQEPAKGRP DQPAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLHGLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFL NNHSLVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT hide sequence

RefSeq Acc Id:

NP_999344 ⟸ NM_214179

- UniProtKB:

A0A8D1MPH9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDYWYDEDLDELCPVCGDKVSGYHYGLLTCETCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADGMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGV
APPPPPPPDYMLPPGLHAPEPKGLAAGPPTGPLGDFGAPTLPMAVPSAHGPLAGYLYPAFPGRAIKSEYPEPYASPPQPGPPYGYPEPFSGGPGVPELIVQLLQLEPDEDQVRARIVGCLQEPAKGRP
DQPAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELHVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLHGLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFL
NNHSLVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT

hide sequence

Ensembl Acc Id:

ENSSSCP00000047808 ⟸ ENSSSCT00000034748

Ensembl Acc Id:

ENSSSCP00000074228 ⟸ ENSSSCT00000085383

Protein Domains

NR LBD Nuclear receptor

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000005588	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSSSCG00015037779	UniProtKB/Swiss-Prot
	ENSSSCG00025032540	UniProtKB/Swiss-Prot
	ENSSSCG00030046093	UniProtKB/Swiss-Prot
	ENSSSCG00035076132	UniProtKB/Swiss-Prot
	ENSSSCG00040003271	UniProtKB/Swiss-Prot
	ENSSSCG00045033632	UniProtKB/Swiss-Prot
	ENSSSCG00055028135	UniProtKB/Swiss-Prot
	ENSSSCG00060077360	UniProtKB/Swiss-Prot
	ENSSSCG00065021631	UniProtKB/Swiss-Prot
	ENSSSCG00070016898	UniProtKB/Swiss-Prot
	ENSSSCG00090028667	UniProtKB/Swiss-Prot
	ENSSSCG00105004921	UniProtKB/Swiss-Prot
	ENSSSCG00110014795	UniProtKB/Swiss-Prot
	ENSSSCG00115007432	UniProtKB/Swiss-Prot
	ENSSSCG00130034741	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSSSCT00000034748	ENTREZGENE
	ENSSSCT00000034748.3	UniProtKB/Swiss-Prot
	ENSSSCT00015050376.1	UniProtKB/Swiss-Prot
	ENSSSCT00025044265.1	UniProtKB/Swiss-Prot
	ENSSSCT00030064379.1	UniProtKB/Swiss-Prot
	ENSSSCT00035103682.1	UniProtKB/Swiss-Prot
	ENSSSCT00040004107.1	UniProtKB/Swiss-Prot
	ENSSSCT00045057600.1	UniProtKB/Swiss-Prot
	ENSSSCT00055055738.1	UniProtKB/Swiss-Prot
	ENSSSCT00060106495.1	UniProtKB/Swiss-Prot
	ENSSSCT00065028781.1	UniProtKB/Swiss-Prot
	ENSSSCT00070033299.1	UniProtKB/Swiss-Prot
	ENSSSCT00070033310.1	UniProtKB/Swiss-Prot
	ENSSSCT00090050736	UniProtKB/Swiss-Prot
	ENSSSCT00105009836	UniProtKB/Swiss-Prot
	ENSSSCT00110027953	UniProtKB/Swiss-Prot
	ENSSSCT00115012975	UniProtKB/Swiss-Prot
	ENSSSCT00130067874	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.565.10	UniProtKB/Swiss-Prot
	3.30.50.10	UniProtKB/Swiss-Prot
InterPro	NHR-like_dom_sf	UniProtKB/Swiss-Prot
	NR5_fam	UniProtKB/Swiss-Prot
	Nucl_hrmn_rcpt_lig-bd	UniProtKB/Swiss-Prot
	Nuclear_hrmn_rcpt	UniProtKB/Swiss-Prot
	Znf_hrmn_rcpt	UniProtKB/Swiss-Prot
	Znf_NHR/GATA	UniProtKB/Swiss-Prot
KEGG Report	ssc:397368	UniProtKB/Swiss-Prot
NCBI Gene	NR5A1	ENTREZGENE
PANTHER	PTHR24086	UniProtKB/Swiss-Prot
	STEROIDOGENIC FACTOR 1	UniProtKB/Swiss-Prot
Pfam	Hormone_recep	UniProtKB/Swiss-Prot
	zf-C4	UniProtKB/Swiss-Prot
PIRSF	Nuc_orph_FTZ-F1	UniProtKB/Swiss-Prot
PRINTS	STRDHORMONER	UniProtKB/Swiss-Prot
	STROIDFINGER	UniProtKB/Swiss-Prot
PROSITE	NR_LBD	UniProtKB/Swiss-Prot
	NUCLEAR_REC_DBD_1	UniProtKB/Swiss-Prot
	NUCLEAR_REC_DBD_2	UniProtKB/Swiss-Prot
SMART	HOLI	UniProtKB/Swiss-Prot
	ZnF_C4	UniProtKB/Swiss-Prot
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot
	SSF48508	UniProtKB/Swiss-Prot
UniProt	A0A4X1UD16_PIG	UniProtKB/TrEMBL
	A0A4X1UHV3_PIG	UniProtKB/TrEMBL
	A0A8D0IZZ3_PIG	UniProtKB/TrEMBL
	A0A8D1B4D4_PIG	UniProtKB/TrEMBL
	A0A8D1IZM2_PIG	UniProtKB/TrEMBL
	A0A8D1MPH9	ENTREZGENE, UniProtKB/TrEMBL
	A2BD07	ENTREZGENE
	P79387	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A2BD07	UniProtKB/Swiss-Prot
VGNC ID	VGNC:90886	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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