NR5A1 (nuclear receptor subfamily 5 group A member 1) - Rat Genome Database

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Gene: NR5A1 (nuclear receptor subfamily 5 group A member 1) Sus scrofa
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Symbol: NR5A1
Name: nuclear receptor subfamily 5 group A member 1
RGD ID: 14268903
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN adrenal gland development (ortholog); calcineurin-mediated signaling (ortholog); female gonad development (ortholog); ASSOCIATED WITH 46 XX gonadal dysgenesis (ortholog); 46, XY Disorders of Sex Development (ortholog); 46,XX sex reversal 4 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: adrenal 4-binding protein; fushi tarazu factor homolog 1; SF-1; steroid hormone receptor Ad4BP; steroidogenic factor 1; steroidogenic factor-1 SF-1; STF-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,284,493 - 265,311,417 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,284,491 - 265,311,547 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,123,683 - 299,135,326 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q210-q211NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:9154138   PMID:9724033   PMID:14681463   PMID:17145712   PMID:22301074   PMID:26055431   PMID:29378329   PMID:30032202  


Genomics

Comparative Map Data
NR5A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,284,493 - 265,311,417 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,284,491 - 265,311,547 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,123,683 - 299,135,326 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q210-q211NCBI
NR5A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,481,236 - 124,507,399 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,481,236 - 124,507,420 (-)EnsemblGRCh38hg38GRCh38
GRCh379127,243,515 - 127,269,678 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,283,336 - 126,309,520 (-)NCBINCBI36Build 36hg18NCBI36
Build 349124,323,069 - 124,349,253NCBI
Celera997,890,732 - 97,916,915 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef996,856,059 - 96,882,213 (-)NCBIHuRef
CHM1_19127,392,508 - 127,418,653 (-)NCBICHM1_1
T2T-CHM13v2.09136,679,465 - 136,705,624 (-)NCBIT2T-CHM13v2.0
Nr5a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,582,668 - 38,604,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,582,668 - 38,604,554 (-)EnsemblGRCm39 Ensembl
GRCm38238,692,656 - 38,714,542 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl238,692,656 - 38,714,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv37238,548,180 - 38,570,062 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,514,636 - 38,536,512 (-)NCBIMGSCv36mm8
Celera240,416,849 - 40,438,726 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Nr5a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,874,505 - 42,896,109 (-)NCBIGRCr8
mRatBN7.2322,464,786 - 22,486,328 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,465,502 - 22,486,328 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx325,933,801 - 25,954,690 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,518,798 - 34,539,688 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,331,170 - 32,351,980 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0322,998,900 - 23,020,441 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,999,616 - 23,020,441 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,223,427 - 28,244,968 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,498,913 - 18,519,738 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,395,933 - 18,412,441 (-)NCBI
Celera320,898,726 - 20,919,551 (-)NCBICelera
Cytogenetic Map3q12NCBI
Nr5a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,632,220 - 3,654,375 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,632,248 - 3,654,367 (+)NCBIChiLan1.0ChiLan1.0
NR5A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,852,025 - 14,874,137 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,854,371 - 14,875,019 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,605,282 - 95,628,773 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,122,968 - 124,149,292 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,122,968 - 124,149,292 (-)Ensemblpanpan1.1panPan2
Nr5a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947192,970,909 - 193,007,215 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648712,739,439 - 12,763,734 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648712,739,445 - 12,763,729 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR5A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,640,453 - 13,666,748 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,640,473 - 13,666,863 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,411,630 - 2,438,042 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr5a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,605,877 - 10,626,386 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,603,504 - 10,626,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NR5A1
784 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system
High
Medium 2 2
Low 1 2 1
Below cutoff 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000034748   ⟹   ENSSSCP00000047808
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1265,284,493 - 265,311,417 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085383   ⟹   ENSSSCP00000074228
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1265,284,493 - 265,311,417 (-)Ensembl
RefSeq Acc Id: NM_214179   ⟹   NP_999344
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11265,285,298 - 265,308,179 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082954   ⟹   XP_020938613
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11265,284,491 - 265,311,547 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082957   ⟹   XP_020938616
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11265,284,491 - 265,308,746 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020938613   ⟸   XM_021082954
- Peptide Label: isoform X1
- UniProtKB: P79387 (UniProtKB/Swiss-Prot),   A2BD07 (UniProtKB/Swiss-Prot),   A0A8D1MPH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938616   ⟸   XM_021082957
- Peptide Label: isoform X1
- UniProtKB: P79387 (UniProtKB/Swiss-Prot),   A2BD07 (UniProtKB/Swiss-Prot),   A0A8D1MPH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_999344   ⟸   NM_214179
- UniProtKB: A0A8D1MPH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047808   ⟸   ENSSSCT00000034748
RefSeq Acc Id: ENSSSCP00000074228   ⟸   ENSSSCT00000085383
Protein Domains
NR LBD   Nuclear receptor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005588 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005019645 UniProtKB/TrEMBL
  ENSSSCG00015037779 UniProtKB/Swiss-Prot
  ENSSSCG00025032540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030046093 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035076132 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040003271 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045033632 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050044836 UniProtKB/TrEMBL
  ENSSSCG00055028135 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00060077360 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00065021631 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070016898 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000034748 ENTREZGENE
  ENSSSCT00000034748.3 UniProtKB/Swiss-Prot
  ENSSSCT00000085383.1 UniProtKB/TrEMBL
  ENSSSCT00005031098.1 UniProtKB/TrEMBL
  ENSSSCT00015050376.1 UniProtKB/Swiss-Prot
  ENSSSCT00025044265.1 UniProtKB/Swiss-Prot
  ENSSSCT00025044320.1 UniProtKB/TrEMBL
  ENSSSCT00030064339.1 UniProtKB/TrEMBL
  ENSSSCT00030064379.1 UniProtKB/Swiss-Prot
  ENSSSCT00030064397.1 UniProtKB/TrEMBL
  ENSSSCT00035103591.1 UniProtKB/TrEMBL
  ENSSSCT00035103682.1 UniProtKB/Swiss-Prot
  ENSSSCT00035103731.1 UniProtKB/TrEMBL
  ENSSSCT00040004107.1 UniProtKB/Swiss-Prot
  ENSSSCT00040004112.1 UniProtKB/TrEMBL
  ENSSSCT00045057542.1 UniProtKB/TrEMBL
  ENSSSCT00045057600.1 UniProtKB/Swiss-Prot
  ENSSSCT00045057661.1 UniProtKB/TrEMBL
  ENSSSCT00050061032.1 UniProtKB/TrEMBL
  ENSSSCT00055055738.1 UniProtKB/Swiss-Prot
  ENSSSCT00055055775.1 UniProtKB/TrEMBL
  ENSSSCT00060106495.1 UniProtKB/Swiss-Prot
  ENSSSCT00060106503.1 UniProtKB/TrEMBL
  ENSSSCT00065028781.1 UniProtKB/Swiss-Prot
  ENSSSCT00065028784.1 UniProtKB/TrEMBL
  ENSSSCT00070033299.1 UniProtKB/Swiss-Prot
  ENSSSCT00070033306.1 UniProtKB/TrEMBL
  ENSSSCT00070033310.1 UniProtKB/Swiss-Prot
  ENSSSCT00070033311.1 UniProtKB/TrEMBL
  ENSSSCT00070033320.1 UniProtKB/TrEMBL
  ENSSSCT00070033327.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NR5_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397368 UniProtKB/Swiss-Prot
NCBI Gene NR5A1 ENTREZGENE
PANTHER PTHR24086 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STEROIDOGENIC FACTOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF Nuc_orph_FTZ-F1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1UD16_PIG UniProtKB/TrEMBL
  A0A4X1UHV3_PIG UniProtKB/TrEMBL
  A0A8D0IZZ3_PIG UniProtKB/TrEMBL
  A0A8D1B4D4_PIG UniProtKB/TrEMBL
  A0A8D1IZM2_PIG UniProtKB/TrEMBL
  A0A8D1MPH9 ENTREZGENE, UniProtKB/TrEMBL
  A2BD07 ENTREZGENE
  P79387 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A5G2RGQ9 UniProtKB/TrEMBL
  A2BD07 UniProtKB/Swiss-Prot
VGNC ID VGNC:90886 ENTREZGENE