Symbol:
IRX5
Name:
iroquois homeobox 5
RGD ID:
14215050
Description:
ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH anodontia (ortholog); Bone Fractures (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN nucleus (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
iroquois-class homeodomain protein IRX-5
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
IRX5
IRX5 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 16 54,930,865 - 54,934,485 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 16 54,930,865 - 54,934,485 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 16 54,964,777 - 54,968,397 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 16 53,522,612 - 53,525,898 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 16 53,522,611 - 53,525,894 NCBI Celera 16 39,479,883 - 39,483,213 (+) NCBI Celera Cytogenetic Map 16 q12.2 NCBI HuRef 16 40,851,390 - 40,854,676 (+) NCBI HuRef CHM1_1 16 56,372,071 - 56,375,357 (+) NCBI CHM1_1 T2T-CHM13v2.0 16 60,728,978 - 60,732,598 (+) NCBI T2T-CHM13v2.0
Irx5 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 93,084,424 - 93,088,084 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 93,084,253 - 93,102,914 (+) Ensembl GRCm39 Ensembl GRCm38 8 92,357,796 - 92,361,456 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 92,357,625 - 92,376,286 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 94,881,695 - 94,885,355 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 95,246,924 - 95,250,584 (+) NCBI MGSCv36 mm8 Celera 8 96,669,925 - 96,673,589 (+) NCBI Celera Cytogenetic Map 8 C5 NCBI cM Map 8 44.93 NCBI
Irx5 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 30,812,033 - 30,816,885 (-) NCBI GRCr8 mRatBN7.2 19 14,639,052 - 14,643,911 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 14,624,225 - 14,642,318 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 16,335,573 - 16,338,267 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 21,530,376 - 21,533,070 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 24,476,554 - 24,479,248 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 16,415,813 - 16,421,088 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 16,415,636 - 16,421,191 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 27,490,017 - 27,494,759 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 15,747,720 - 15,750,414 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 19 14,553,091 - 14,555,785 (-) NCBI Celera Cytogenetic Map 19 p11 NCBI
Irx5 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955433 12,519,338 - 12,522,118 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955433 12,518,786 - 12,522,744 (+) NCBI ChiLan1.0 ChiLan1.0
IRX5 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 18 64,359,486 - 64,363,237 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 16 70,278,544 - 70,282,165 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 16 35,164,884 - 35,168,189 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 16 54,272,272 - 54,275,431 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 16 54,272,412 - 54,275,124 (+) Ensembl panpan1.1 panPan2
IRX5 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 2 60,957,353 - 60,978,782 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 2 60,968,193 - 61,041,385 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 2 57,609,385 - 57,612,765 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 2 61,516,686 - 61,520,066 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 2 61,509,877 - 61,582,135 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 2 58,341,971 - 58,345,349 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 2 59,367,066 - 59,370,437 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 2 60,245,608 - 60,248,977 (-) NCBI UU_Cfam_GSD_1.0
Irx5 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409349 52,231,182 - 52,234,905 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936475 7,354,642 - 7,358,553 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936475 7,354,273 - 7,358,328 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
IRX5
Irx5
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
2
2
11
1
7
5
11
2
2
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSSSCT00000042364 ⟹ ENSSSCP00000032113
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 6 30,511,894 - 30,514,808 (-) Ensembl
RefSeq Acc Id:
XM_021094164 ⟹ XP_020949823
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 6 30,511,263 - 30,515,015 (-) NCBI
Sequence:
CTCCTGCCAGTCCTCCCACCGACTACACCCCGGGAAGGAGGAGCTTCAGGCGCGCACAAGGCGTCAGAATCCTCAATTTCCAACTTAGCATCTTGGCAGGACCTTTGCGAAGCCAAAAGCAGAGCCCC
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RefSeq Acc Id:
XP_020949823 ⟸ XM_021094164
- UniProtKB:
A0A286ZKM7 (UniProtKB/TrEMBL)
- Sequence:
MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPGYNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATL
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Ensembl Acc Id:
ENSSSCP00000032113 ⟸ ENSSSCT00000042364
