RAB1A (RAB1A, member RAS oncogene family) - Rat Genome Database

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Gene: RAB1A (RAB1A, member RAS oncogene family) Sus scrofa
Analyze
Symbol: RAB1A
Name: RAB1A, member RAS oncogene family
RGD ID: 14187205
Description: ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); cell migration (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); exocytic vesicle (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: RAB1B; RAB1B, member RAS oncogene family; ras-related protein Rab-1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl376,837,430 - 76,869,778 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1376,837,673 - 76,868,156 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2380,675,435 - 80,712,268 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:29128753  


Genomics

Comparative Map Data
RAB1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl376,837,430 - 76,869,778 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1376,837,673 - 76,868,156 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2380,675,435 - 80,712,268 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38265,086,854 - 65,130,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl265,070,696 - 65,130,331 (-)EnsemblGRCh38hg38GRCh38
GRCh37265,313,988 - 65,357,240 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36265,167,493 - 65,210,793 (-)NCBINCBI36Build 36hg18NCBI36
Build 34265,225,639 - 65,268,940NCBI
Celera265,160,375 - 65,204,151 (-)NCBICelera
Cytogenetic Map2p14NCBI
HuRef265,047,966 - 65,091,371 (-)NCBIHuRef
CHM1_1265,244,946 - 65,288,425 (-)NCBICHM1_1
T2T-CHM13v2.0265,096,482 - 65,139,769 (-)NCBIT2T-CHM13v2.0
Rab1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,151,412 - 20,176,856 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1120,151,432 - 20,176,856 (+)EnsemblGRCm39 Ensembl
GRCm381120,201,412 - 20,226,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,201,432 - 20,226,856 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,101,605 - 20,126,859 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,101,605 - 20,126,859 (+)NCBIMGSCv36mm8
Celera1122,350,977 - 22,376,228 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1112.92NCBI
Rab1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81498,623,582 - 98,648,766 (+)NCBIGRCr8
mRatBN7.21494,422,219 - 94,448,799 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1494,415,275 - 94,448,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1498,769,042 - 98,794,089 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014100,009,313 - 100,034,363 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01496,476,690 - 96,501,729 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014104,475,082 - 104,500,176 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14104,475,082 - 104,501,020 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014104,208,420 - 104,235,377 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414100,973,039 - 101,027,893 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114100,992,249 - 101,047,101 (+)NCBI
Celera1493,445,267 - 93,470,406 (+)NCBICelera
Cytogenetic Map14q22NCBI
Rab1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542419,393,589 - 19,421,373 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542419,393,589 - 19,421,373 (+)NCBIChiLan1.0ChiLan1.0
RAB1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21261,270,062 - 61,312,604 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A61,274,033 - 61,317,572 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A65,149,922 - 65,193,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A66,274,809 - 66,318,290 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A66,274,809 - 66,318,290 (-)Ensemblpanpan1.1panPan2
RAB1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11064,564,351 - 64,590,654 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1064,564,298 - 64,590,705 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1064,450,720 - 64,476,763 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01065,573,365 - 65,599,500 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1065,571,363 - 65,599,551 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11065,252,173 - 65,278,224 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01065,560,883 - 65,586,917 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01065,854,509 - 65,880,856 (-)NCBIUU_Cfam_GSD_1.0
Rab1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629218,679,767 - 18,712,642 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364919,858,645 - 9,891,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11441,890,055 - 41,932,180 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604569,948,865 - 69,995,044 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247628,420,305 - 8,449,647 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247628,420,336 - 8,448,478 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB1A
496 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000009153   ⟹   ENSSSCP00000008922
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,837,474 - 76,869,778 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000031971   ⟹   ENSSSCP00000019583
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,837,430 - 76,869,027 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000059098   ⟹   ENSSSCP00000053998
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,854,021 - 76,869,774 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000071654   ⟹   ENSSSCP00000068281
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,837,947 - 76,869,774 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000072082   ⟹   ENSSSCP00000061200
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,837,474 - 76,868,156 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000074694   ⟹   ENSSSCP00000074229
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,837,474 - 76,869,778 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000076963   ⟹   ENSSSCP00000059734
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,837,474 - 76,869,778 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000089717   ⟹   ENSSSCP00000059996
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,837,559 - 76,869,774 (+)Ensembl
RefSeq Acc Id: NM_001031787   ⟹   NP_001026957
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1376,837,673 - 76,868,156 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001026957   ⟸   NM_001031787
- UniProtKB: Q52NJ2 (UniProtKB/Swiss-Prot),   A0A4X1WAN7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000053998   ⟸   ENSSSCT00000059098
Ensembl Acc Id: ENSSSCP00000074229   ⟸   ENSSSCT00000074694
Ensembl Acc Id: ENSSSCP00000008922   ⟸   ENSSSCT00000009153
Ensembl Acc Id: ENSSSCP00000019583   ⟸   ENSSSCT00000031971
Ensembl Acc Id: ENSSSCP00000059996   ⟸   ENSSSCT00000089717
Ensembl Acc Id: ENSSSCP00000059734   ⟸   ENSSSCT00000076963
Ensembl Acc Id: ENSSSCP00000061200   ⟸   ENSSSCT00000072082
Ensembl Acc Id: ENSSSCP00000068281   ⟸   ENSSSCT00000071654


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008359 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005030552 UniProtKB/TrEMBL
  ENSSSCG00025036429 UniProtKB/TrEMBL
  ENSSSCG00030038046 UniProtKB/TrEMBL
  ENSSSCG00035078303 UniProtKB/TrEMBL
  ENSSSCG00040072979 UniProtKB/TrEMBL
  ENSSSCG00045012887 UniProtKB/TrEMBL
  ENSSSCG00050067712 UniProtKB/TrEMBL
  ENSSSCG00055012139 UniProtKB/TrEMBL
  ENSSSCG00060049732 UniProtKB/TrEMBL
  ENSSSCG00065026526 UniProtKB/TrEMBL
  ENSSSCG00070029991 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009153 ENTREZGENE
  ENSSSCT00000009153.3 UniProtKB/TrEMBL
  ENSSSCT00000031971.3 UniProtKB/TrEMBL
  ENSSSCT00000059098.3 UniProtKB/TrEMBL
  ENSSSCT00000071654.2 UniProtKB/TrEMBL
  ENSSSCT00000072082.2 UniProtKB/TrEMBL
  ENSSSCT00000074694.1 UniProtKB/TrEMBL
  ENSSSCT00000076963.1 UniProtKB/TrEMBL
  ENSSSCT00000089717.2 UniProtKB/TrEMBL
  ENSSSCT00005048863.1 UniProtKB/TrEMBL
  ENSSSCT00005048908.1 UniProtKB/TrEMBL
  ENSSSCT00025049692.1 UniProtKB/TrEMBL
  ENSSSCT00025049696.1 UniProtKB/TrEMBL
  ENSSSCT00025049787.1 UniProtKB/TrEMBL
  ENSSSCT00030053039.1 UniProtKB/TrEMBL
  ENSSSCT00030053052.1 UniProtKB/TrEMBL
  ENSSSCT00030053133.1 UniProtKB/TrEMBL
  ENSSSCT00035106927.1 UniProtKB/TrEMBL
  ENSSSCT00035107000.1 UniProtKB/TrEMBL
  ENSSSCT00035107254.1 UniProtKB/TrEMBL
  ENSSSCT00035107263.1 UniProtKB/TrEMBL
  ENSSSCT00040100679.1 UniProtKB/TrEMBL
  ENSSSCT00040100742.1 UniProtKB/TrEMBL
  ENSSSCT00040101102.1 UniProtKB/TrEMBL
  ENSSSCT00040101143.1 UniProtKB/TrEMBL
  ENSSSCT00045021976.1 UniProtKB/TrEMBL
  ENSSSCT00045021999.1 UniProtKB/TrEMBL
  ENSSSCT00045022124.1 UniProtKB/TrEMBL
  ENSSSCT00045022136.1 UniProtKB/TrEMBL
  ENSSSCT00050092439.1 UniProtKB/TrEMBL
  ENSSSCT00050092446.1 UniProtKB/TrEMBL
  ENSSSCT00050092494.1 UniProtKB/TrEMBL
  ENSSSCT00055023938.1 UniProtKB/TrEMBL
  ENSSSCT00055023965.1 UniProtKB/TrEMBL
  ENSSSCT00055024110.1 UniProtKB/TrEMBL
  ENSSSCT00060067575.1 UniProtKB/TrEMBL
  ENSSSCT00060067616.1 UniProtKB/TrEMBL
  ENSSSCT00060067675.1 UniProtKB/TrEMBL
  ENSSSCT00060067679.1 UniProtKB/TrEMBL
  ENSSSCT00065035664.1 UniProtKB/TrEMBL
  ENSSSCT00065035669.1 UniProtKB/TrEMBL
  ENSSSCT00065035682.1 UniProtKB/TrEMBL
  ENSSSCT00070060293.1 UniProtKB/TrEMBL
  ENSSSCT00070060302.1 UniProtKB/TrEMBL
  ENSSSCT00070060307.1 UniProtKB/TrEMBL
  ENSSSCT00070060310.1 UniProtKB/TrEMBL
  ENSSSCT00070060311.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase_Rab UniProtKB/TrEMBL
KEGG Report ssc:595116 UniProtKB/Swiss-Prot
NCBI Gene RAB1A ENTREZGENE
PANTHER LD21953P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LD44762P UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART ARF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287BD00_PIG UniProtKB/TrEMBL
  A0A4X1W4U3_PIG UniProtKB/TrEMBL
  A0A4X1W4V7_PIG UniProtKB/TrEMBL
  A0A4X1WAN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1WBU7_PIG UniProtKB/TrEMBL
  A0A4X1WBV2_PIG UniProtKB/TrEMBL
  A0A5G2Q820_PIG UniProtKB/TrEMBL
  A0A5G2QA22_PIG UniProtKB/TrEMBL
  A0A5G2QCI0_PIG UniProtKB/TrEMBL
  A0A5G2QTM4_PIG UniProtKB/TrEMBL
  A0A5G2RA85_PIG UniProtKB/TrEMBL
  A0A8D0MPH6_PIG UniProtKB/TrEMBL
  A0A8D1Y9K1_PIG UniProtKB/TrEMBL
  F2Z5U4_PIG UniProtKB/TrEMBL
  I3L6D2_PIG UniProtKB/TrEMBL
  Q52NJ2 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:104042 ENTREZGENE