Rab1a (RAB1A, member RAS oncogene family) - Rat Genome Database

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Gene: Rab1a (RAB1A, member RAS oncogene family) Heterocephalus glaber
Analyze
Symbol: Rab1a
Name: RAB1A, member RAS oncogene family
RGD ID: 18914941
Description: ENCODES a protein that exhibits GTP binding (ortholog); INVOLVED IN cilium assembly (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); establishment of endothelial intestinal barrier (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247628,420,305 - 8,449,647 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247628,420,336 - 8,448,478 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rab1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247628,420,305 - 8,449,647 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247628,420,336 - 8,448,478 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RAB1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38265,086,854 - 65,130,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl265,070,696 - 65,130,331 (-)EnsemblGRCh38hg38GRCh38
GRCh37265,313,988 - 65,357,240 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36265,167,493 - 65,210,793 (-)NCBINCBI36Build 36hg18NCBI36
Build 34265,225,639 - 65,268,940NCBI
Celera265,160,375 - 65,204,151 (-)NCBICelera
Cytogenetic Map2p14NCBI
HuRef265,047,966 - 65,091,371 (-)NCBIHuRef
CHM1_1265,244,946 - 65,288,425 (-)NCBICHM1_1
T2T-CHM13v2.0265,096,482 - 65,139,769 (-)NCBIT2T-CHM13v2.0
Rab1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,151,412 - 20,176,856 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1120,151,432 - 20,176,856 (+)EnsemblGRCm39 Ensembl
GRCm381120,201,412 - 20,226,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,201,432 - 20,226,856 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,101,605 - 20,126,859 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,101,605 - 20,126,859 (+)NCBIMGSCv36mm8
Celera1122,350,977 - 22,376,228 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1112.92NCBI
Rab1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81498,623,582 - 98,648,766 (+)NCBIGRCr8
mRatBN7.21494,422,219 - 94,448,799 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1494,415,275 - 94,448,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1498,769,042 - 98,794,089 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014100,009,313 - 100,034,363 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01496,476,690 - 96,501,729 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014104,475,082 - 104,500,176 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14104,475,082 - 104,501,020 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014104,208,420 - 104,235,377 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414100,973,039 - 101,027,893 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114100,992,249 - 101,047,101 (+)NCBI
Celera1493,445,267 - 93,470,406 (+)NCBICelera
Cytogenetic Map14q22NCBI
Rab1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542419,393,589 - 19,421,373 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542419,393,589 - 19,421,373 (+)NCBIChiLan1.0ChiLan1.0
RAB1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21261,270,062 - 61,312,604 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A61,274,033 - 61,317,572 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A65,149,922 - 65,193,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A66,274,809 - 66,318,290 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A66,274,809 - 66,318,290 (-)Ensemblpanpan1.1panPan2
RAB1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11064,564,351 - 64,590,654 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1064,564,298 - 64,590,705 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1064,450,720 - 64,476,763 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01065,573,365 - 65,599,500 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1065,571,363 - 65,599,551 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11065,252,173 - 65,278,224 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01065,560,883 - 65,586,917 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01065,854,509 - 65,880,856 (-)NCBIUU_Cfam_GSD_1.0
Rab1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629218,679,767 - 18,712,642 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364919,858,645 - 9,891,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl376,837,430 - 76,869,778 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1376,837,673 - 76,868,156 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2380,675,435 - 80,712,268 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11441,890,055 - 41,932,180 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604569,948,865 - 69,995,044 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019139   ⟹   ENSHGLP00000018950
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247628,420,305 - 8,449,647 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019140   ⟹   ENSHGLP00000018951
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247628,420,589 - 8,447,859 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019141   ⟹   ENSHGLP00000018952
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247628,420,589 - 8,447,859 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019142   ⟹   ENSHGLP00000018953
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247628,432,246 - 8,447,859 (+)Ensembl
RefSeq Acc Id: XM_004849961   ⟹   XP_004850018
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247628,420,336 - 8,448,478 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004850018 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018950
  ENSHGLP00000045987
GenBank Protein JAN96355 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004850018   ⟸   XM_004849961
- UniProtKB: A0A0P6IZP9 (UniProtKB/TrEMBL),   G5C5Z3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018953   ⟸   ENSHGLT00000019142
RefSeq Acc Id: ENSHGLP00000018951   ⟸   ENSHGLT00000019140
RefSeq Acc Id: ENSHGLP00000018952   ⟸   ENSHGLT00000019141
RefSeq Acc Id: ENSHGLP00000018950   ⟸   ENSHGLT00000019139


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013585 Ensembl, ENTREZGENE
  ENSHGLG00000045077 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000019139 ENTREZGENE
  ENSHGLT00000044385 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report hgl:101712610 UniProtKB/TrEMBL
NCBI Gene Rab1a ENTREZGENE
PANTHER LD21953P UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6IZP9 ENTREZGENE, UniProtKB/TrEMBL
  G5C5Z3 ENTREZGENE, UniProtKB/TrEMBL