SSPO (SCO-spondin) - Rat Genome Database

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Pathways
Gene: SSPO (SCO-spondin) Sus scrofa
Analyze
Symbol: SSPO
Name: SCO-spondin
RGD ID: 14180985
Description: ENCODES a protein that exhibits peptidase inhibitor activity (inferred); PARTICIPATES IN Hedgehog signaling pathway; mTOR signaling pathway; Notch signaling pathway; FOUND IN cytoplasm (ortholog); INTERACTS WITH deoxynivalenol; graphene oxide
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SCO-spondin, pseudogene; SSPOP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11855,783,659 - 55,839,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SSPO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11855,783,659 - 55,839,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SSPOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387149,776,042 - 149,833,965 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7149,776,042 - 149,833,829 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh377149,473,131 - 149,531,054 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367149,104,064 - 149,161,987 (+)NCBIBuild 36Build 36hg18NCBI36
Celera7144,142,344 - 144,200,269 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7143,549,056 - 143,606,500 (+)NCBIHuRef
CHM1_17149,481,703 - 149,539,633 (+)NCBICHM1_1
T2T-CHM13v2.07150,957,942 - 151,015,873 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27148,811,145 - 148,869,073 (+)NCBI
Sspo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39648,423,164 - 48,478,196 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl648,425,163 - 48,478,184 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38648,446,230 - 48,501,262 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl648,448,229 - 48,501,250 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37648,398,228 - 48,451,249 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36648,377,815 - 48,430,821 (+)NCBIMGSCv36mm8
Celera648,952,263 - 49,005,530 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map623.42NCBI
Sspo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,725,829 - 78,781,330 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl478,727,275 - 78,781,315 (+)EnsemblGRCr8
mRatBN7.2477,394,915 - 77,450,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl477,397,059 - 77,450,412 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx482,604,065 - 82,657,564 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0478,379,570 - 78,433,071 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0476,819,843 - 76,873,346 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd479,976,284 - 80,029,652 (+)NCBI
Lyon_Normotensive477,659,527 - 77,712,879 (+)NCBI
Lyon_Hypertensive478,176,459 - 78,229,817 (+)NCBI
F344_StmMcwi478,075,718 - 78,129,033 (+)NCBI
Rnor_6.0478,076,695 - 78,133,676 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl478,080,310 - 78,133,654 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.04142,741,801 - 142,797,367 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4476,533,300 - 76,587,372 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera472,334,747 - 72,387,924 (+)NCBICelera
Cytogenetic Map4q24NCBI
Sspo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,840,657 - 4,888,929 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554914,840,657 - 4,889,060 (+)NCBIChiLan1.0ChiLan1.0
SSPOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26186,333,198 - 186,390,593 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1738,343,462 - 38,400,857 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07141,477,578 - 141,537,109 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17153,952,527 - 154,009,016 (+)NCBIPanPan1.1PanPan1.1panPan2
SSPO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,547,529 - 14,599,163 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,548,097 - 14,599,147 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1615,156,808 - 15,207,847 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01616,262,986 - 16,314,042 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,262,986 - 16,314,042 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11614,643,044 - 14,694,009 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,223,874 - 15,274,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,274,039 - 15,325,105 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101972385
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap12225,204,755 - 225,260,151 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_0244051187,028,434 - 7,081,083 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,824,319 - 5,874,879 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,821,533 - 5,874,995 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103227202
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap121122,804,637 - 122,866,675 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366607214,298,648 - 14,359,362 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.121118,339,676 - 118,399,716 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Sspo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248006,196,413 - 6,242,808 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in SSPO
903 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021078747   ⟹   XP_020934406
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11855,783,659 - 55,839,167 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_084861143 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000076781.1
  ENSSSCP00000079217.1
RefSeq Acc Id: XP_020934406   ⟸   XM_021078747
- Sequence:
Protein Domains
CTCK   F5/8 type C   VWFC   VWFD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039661 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000045656.3 UniProtKB/TrEMBL
  ENSSSCT00000095078.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.620 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Low-density Lipoprotein Receptor UniProtKB/TrEMBL
  Thrombospondin type-1 (TSP1) repeat UniProtKB/TrEMBL
InterPro Cys_knot_C UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
  Mucin_vWF_Thrombospondin_sf UniProtKB/TrEMBL
  Pacifastin_dom_sf UniProtKB/TrEMBL
  Ser_inhib-like_sf UniProtKB/TrEMBL
  TIL_dom UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
  VWF/SSPO/ZAN-like_Cys-rich_dom UniProtKB/TrEMBL
  VWF_dom UniProtKB/TrEMBL
  VWF_type-D UniProtKB/TrEMBL
NCBI Gene SSPO ENTREZGENE
PANTHER EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED UniProtKB/TrEMBL
  SCO-SPONDIN UniProtKB/TrEMBL
Pfam F5_F8_type_C UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/TrEMBL
  PF08742 UniProtKB/TrEMBL
  TIL UniProtKB/TrEMBL
  TSP_1 UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
  VWF UniProtKB/TrEMBL
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE CTCK_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
  LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
  VWFC_1 UniProtKB/TrEMBL
  VWFC_2 UniProtKB/TrEMBL
  VWFD UniProtKB/TrEMBL
SMART LDLa UniProtKB/TrEMBL
  SM00041 UniProtKB/TrEMBL
  SM00832 UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
  VWC_out UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
Superfamily-SCOP FnI-like domain UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  LDL receptor-like module UniProtKB/TrEMBL
  PMP inhibitors UniProtKB/TrEMBL
  Serine protease inhibitors UniProtKB/TrEMBL
  TSP-1 type 1 repeat UniProtKB/TrEMBL
UniProt A0A8W4FBK8_PIG UniProtKB/TrEMBL
  A0A8W4FLN3_PIG UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-13 SSPO  SCO-spondin  SSPOP  SCO-spondin  Symbol and/or name change 5135510 APPROVED
2022-08-09 SSPOP  SCO-spondin  SSPO  SCO-spondin  Symbol and/or name change 5135510 APPROVED
2020-08-04 SSPO  SCO-spondin  SSPOP  SCO-spondin, pseudogene  Symbol and/or name change 5135510 APPROVED
2020-01-21 SSPOP  SCO-spondin, pseudogene  SSPO  SCO-spondin  Symbol and/or name change 5135510 APPROVED