SSPO (Sus scrofa - pig) |
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SSPOP (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 7 | 149,776,042 - 149,833,965 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 7 | 149,776,042 - 149,833,829 (+) | Ensembl | | GRCh38.p14 Ensembl | hg38 | GRCh38 | GRCh37 | 7 | 149,473,131 - 149,531,054 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 7 | 149,104,064 - 149,161,987 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Celera | 7 | 144,142,344 - 144,200,269 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | q36.1 | NCBI | | | | | HuRef | 7 | 143,549,056 - 143,606,500 (+) | NCBI | | HuRef | | | CHM1_1 | 7 | 149,481,703 - 149,539,633 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 7 | 150,957,942 - 151,015,873 (+) | NCBI | | T2T-CHM13v2.0 | | | CRA_TCAGchr7v2 | 7 | 148,811,145 - 148,869,073 (+) | NCBI | | | | |
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Sspo (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 6 | 48,423,164 - 48,478,196 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 6 | 48,425,163 - 48,478,184 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 6 | 48,446,230 - 48,501,262 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 6 | 48,448,229 - 48,501,250 (+) | Ensembl | | GRCm38.p6 Ensembl | mm10 | GRCm38 | MGSCv37 | 6 | 48,398,228 - 48,451,249 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 6 | 48,377,815 - 48,430,821 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 6 | 48,952,263 - 49,005,530 (+) | NCBI | | Celera | | | Cytogenetic Map | 6 | B2.3 | NCBI | | | | | cM Map | 6 | 23.42 | NCBI | | | | |
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Sspo (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 4 | 78,725,829 - 78,781,330 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 4 | 78,727,275 - 78,781,315 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 4 | 77,394,915 - 77,450,526 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 4 | 77,397,059 - 77,450,412 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 4 | 82,604,065 - 82,657,564 (+) | NCBI | UTH_Rnor_SHR_Utx | | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 4 | 78,379,570 - 78,433,071 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | | UTH_Rnor_WKY_Bbb_1.0 | 4 | 76,819,843 - 76,873,346 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | | | | Dahl_SR_JrHsd | 4 | 79,976,284 - 80,029,652 (+) | NCBI | | | | | Lyon_Normotensive | 4 | 77,659,527 - 77,712,879 (+) | NCBI | | | | | Lyon_Hypertensive | 4 | 78,176,459 - 78,229,817 (+) | NCBI | | | | | F344_StmMcwi | 4 | 78,075,718 - 78,129,033 (+) | NCBI | | | | | Rnor_6.0 | 4 | 78,076,695 - 78,133,676 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 4 | 78,080,310 - 78,133,654 (+) | Ensembl | | Rnor_6.0 Ensembl | rn6 | Rnor6.0 | Rnor_5.0 | 4 | 142,741,801 - 142,797,367 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 4 | 76,533,300 - 76,587,372 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 4 | 72,334,747 - 72,387,924 (+) | NCBI | | Celera | | | Cytogenetic Map | 4 | q24 | NCBI | | | | |
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Sspo (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955491 | 4,840,657 - 4,888,929 (+) | Ensembl | | ChiLan1.0 Ensembl | | | ChiLan1.0 | NW_004955491 | 4,840,657 - 4,889,060 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SSPOP (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 6 | 186,333,198 - 186,390,593 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 7 | 38,343,462 - 38,400,857 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 7 | 141,477,578 - 141,537,109 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 7 | 153,952,527 - 154,009,016 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | |
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SSPO (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 16 | 14,547,529 - 14,599,163 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 16 | 14,548,097 - 14,599,147 (+) | Ensembl | | CanFam3.1 Ensembl | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 16 | 15,156,808 - 15,207,847 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 16 | 16,262,986 - 16,314,042 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 16 | 16,262,986 - 16,314,042 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 16 | 14,643,044 - 14,694,009 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 16 | 15,223,874 - 15,274,902 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 16 | 15,274,039 - 15,325,105 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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LOC101972385 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
mIctTri1.hap1 | 2 | 225,204,755 - 225,260,151 (+) | NCBI | | mIctTri1.hap1 | | | HiC_Itri_2 | NW_024405118 | 7,028,434 - 7,081,083 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936527 | 5,824,319 - 5,874,879 (+) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936527 | 5,821,533 - 5,874,995 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LOC103227202 (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
mChlSab1.0.hap1 | 21 | 122,804,637 - 122,866,675 (+) | NCBI | | mChlSab1.0.hap1 | | | Vero_WHO_p1.0 | NW_023666072 | 14,298,648 - 14,359,362 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | | ChlSab1.1 | 21 | 118,339,676 - 118,399,716 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | |
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Sspo (Heterocephalus glaber - naked mole-rat) |
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