RPSA (ribosomal protein SA) - Rat Genome Database

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Gene: RPSA (ribosomal protein SA) Sus scrofa
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Symbol: RPSA
Name: ribosomal protein SA
RGD ID: 14085627
Description: ENCODES a protein that exhibits DNA binding (ortholog); ribosome binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cell-cell adhesion (ortholog); epithelial cell differentiation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Animal Disease Models (ortholog); arrhythmogenic right ventricular dysplasia 5 (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane; cytosolic small ribosomal subunit; basement membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 37 kDa laminin receptor; 37/67 kDa laminin receptor; 37LRP; 40S ribosomal protein SA; 67 kDa laminin receptor; 67LR; laminin receptor 1; laminin-binding protein precursor p40; lamR; LAMR1; LBP/p40; LRP/LR; small ribosomal subunit protein uS2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1324,072,527 - 24,081,541 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11324,072,551 - 24,081,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,315,726 - 26,319,088 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21326,391,337 - 26,393,313 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:15790424   PMID:17434268   PMID:22301074   PMID:24930395   PMID:25694590   PMID:30032202  


Genomics

Comparative Map Data
RPSA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1324,072,527 - 24,081,541 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11324,072,551 - 24,081,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,315,726 - 26,319,088 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21326,391,337 - 26,393,313 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPSA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38339,406,720 - 39,412,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl339,406,716 - 39,426,255 (+)EnsemblGRCh38hg38GRCh38
GRCh37339,448,211 - 39,454,033 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,422,917 - 39,429,037 (+)NCBINCBI36Build 36hg18NCBI36
Build 34339,423,189 - 39,429,034NCBI
Celera339,389,788 - 39,395,643 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef339,491,541 - 39,497,373 (+)NCBIHuRef
CHM1_1339,399,317 - 39,405,084 (+)NCBICHM1_1
T2T-CHM13v2.0339,419,647 - 39,425,467 (+)NCBIT2T-CHM13v2.0
Rpsa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,956,832 - 119,961,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9119,956,755 - 119,961,435 (+)EnsemblGRCm39 Ensembl
GRCm389120,127,766 - 120,132,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,127,689 - 120,132,369 (+)EnsemblGRCm38mm10GRCm38
MGSCv379120,036,884 - 120,041,487 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369119,976,486 - 119,981,067 (+)NCBIMGSCv36mm8
Celera9120,596,577 - 120,601,180 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map971.41NCBI
Rpsa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88128,728,761 - 128,732,736 (+)NCBIGRCr8
mRatBN7.28119,851,225 - 119,855,103 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8119,851,225 - 119,855,247 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8125,431,583 - 125,435,441 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08123,630,619 - 123,634,477 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08121,471,061 - 121,474,920 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08128,806,053 - 128,809,987 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,806,129 - 128,809,986 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08128,006,814 - 128,010,671 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,100,239 - 125,104,096 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18125,119,975 - 125,123,833 (+)NCBI
Celera8118,996,237 - 119,000,094 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rpsa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542029,978,160 - 29,983,544 (-)NCBIChiLan1.0ChiLan1.0
RPSA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2239,366,441 - 39,372,455 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1339,371,203 - 39,377,212 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0339,311,321 - 39,317,083 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1339,591,012 - 39,596,745 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl339,591,012 - 39,596,748 (+)Ensemblpanpan1.1panPan2
RPSA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1239,070,953 - 9,077,058 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl239,070,953 - 9,077,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha239,106,400 - 9,112,506 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0239,355,693 - 9,361,799 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl239,355,693 - 9,361,798 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1239,168,769 - 9,174,877 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0239,311,676 - 9,317,784 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0239,305,292 - 9,311,400 (+)NCBIUU_Cfam_GSD_1.0
Rpsa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118195,485,476 - 195,489,915 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647328,624,110 - 28,628,488 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPSA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11523,915 - 29,889 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660638,748,646 - 8,754,643 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpsa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473078,808,270 - 78,813,782 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPSA
478 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK231521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK236825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK236883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK239730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK240295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK345661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK352307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK392740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK392954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK400775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK400937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM050292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM267273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY610474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU466503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP102322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01013630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000012334   ⟹   ENSSSCP00000012012
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1324,072,527 - 24,081,541 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000045097   ⟹   ENSSSCP00000050495
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1324,072,740 - 24,083,686 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000057751   ⟹   ENSSSCP00000059243
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1324,072,740 - 24,081,538 (+)Ensembl
RefSeq Acc Id: NM_001037146   ⟹   NP_001032223
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11324,072,551 - 24,081,536 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001032223   ⟸   NM_001037146
- UniProtKB: Q4GWZ2 (UniProtKB/Swiss-Prot),   A0A480SME4 (UniProtKB/TrEMBL),   A0A8D1N4C6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000012012   ⟸   ENSSSCT00000012334
Ensembl Acc Id: ENSSSCP00000050495   ⟸   ENSSSCT00000045097
Ensembl Acc Id: ENSSSCP00000059243   ⟸   ENSSSCT00000057751
Protein Domains
Small ribosomal subunit protein uS2 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037236 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00015070750 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025041954 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035057281 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045005356 UniProtKB/TrEMBL
  ENSSSCG00050056687 UniProtKB/TrEMBL
  ENSSSCG00055012371 UniProtKB/TrEMBL
  ENSSSCG00060066518 UniProtKB/TrEMBL
  ENSSSCG00065077237 UniProtKB/Swiss-Prot
  ENSSSCG00070011407 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00110013914 UniProtKB/Swiss-Prot
  ENSSSCG00115003946 UniProtKB/Swiss-Prot
  ENSSSCG00115022462 UniProtKB/Swiss-Prot
  ENSSSCG00130019655 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000012334.4 UniProtKB/TrEMBL
  ENSSSCT00000057751 ENTREZGENE
  ENSSSCT00000057751.2 UniProtKB/Swiss-Prot
  ENSSSCT00015095037.1 UniProtKB/Swiss-Prot
  ENSSSCT00015095094.1 UniProtKB/TrEMBL
  ENSSSCT00025056901.1 UniProtKB/Swiss-Prot
  ENSSSCT00025057000.1 UniProtKB/TrEMBL
  ENSSSCT00035076613.1 UniProtKB/TrEMBL
  ENSSSCT00035076624.1 UniProtKB/Swiss-Prot
  ENSSSCT00045008895.1 UniProtKB/TrEMBL
  ENSSSCT00050077281.1 UniProtKB/TrEMBL
  ENSSSCT00055024338.1 UniProtKB/TrEMBL
  ENSSSCT00060090808.1 UniProtKB/TrEMBL
  ENSSSCT00065106787.1 UniProtKB/Swiss-Prot
  ENSSSCT00065106791.1 UniProtKB/Swiss-Prot
  ENSSSCT00065106826.1 UniProtKB/Swiss-Prot
  ENSSSCT00070022202.1 UniProtKB/Swiss-Prot
  ENSSSCT00070022210.1 UniProtKB/TrEMBL
  ENSSSCT00110026495 UniProtKB/Swiss-Prot
  ENSSSCT00115006758 UniProtKB/Swiss-Prot
  ENSSSCT00115039762 UniProtKB/Swiss-Prot
  ENSSSCT00130038112 UniProtKB/Swiss-Prot
Gene3D-CATH Glucose-6-phosphate isomerase like protein, domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 40S_ribosomal_SA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  40S_SA_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2_euk/arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2_flav_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:641351 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene RPSA ENTREZGENE
PANTHER PTHR11489 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 40S_SA_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RIBOSOMALS2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOMAL_S2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A480SME4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TT41_PIG UniProtKB/TrEMBL
  A0A5S8KR21_PIG UniProtKB/TrEMBL
  A0A8D0Q168_PIG UniProtKB/TrEMBL
  A0A8D1AJR9_PIG UniProtKB/TrEMBL
  A0A8D1N4C6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QGZ9_PIG UniProtKB/TrEMBL
  Q4GWZ2 ENTREZGENE, UniProtKB/Swiss-Prot