PCGF3 (polycomb group ring finger 3) - Rat Genome Database

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Gene: PCGF3 (polycomb group ring finger 3) Sus scrofa
Analyze
Symbol: PCGF3
Name: polycomb group ring finger 3
RGD ID: 14016856
Description: ENCODES a protein that exhibits histone H2AK119 ubiquitin ligase activity (inferred); metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN random inactivation of X chromosome (inferred); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH cherubism (ortholog); Mental Retardation, Autosomal Recessive 53 (ortholog); FOUND IN membrane (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polycomb group RING finger protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8140,446 - 182,261 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18140,435 - 189,796 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2880,086 - 128,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCGF3Pigcherubism  ISORGD:13440338554872ClinVar Annotator: match by term: Fibrous dysplasia of jawClinVarPMID:28492532
PCGF3PigMental Retardation, Autosomal Recessive 53  ISORGD:13440338554872ClinVar Annotator: match by term: NEURODEVELOPMENTAL DISORDER WITH OR WITHOUT HYPOTONIA, SEIZURES, AND CEREBELLAR ATROPHYClinVarPMID:26996948|PMID:28492532|PMID:28581210|PMID:28771251|PMID:34113002


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCGF3Pigrandom inactivation of X chromosome involved_inIEAUniProtKB:Q8BTQ0|ensembl:ENSMUSP00000041790150520179 EnsemblGO_REF:0000107
PCGF3Pigregulation of transcription by RNA polymerase II involved_inIBAMGI:1918291|PANTHER:PTN000088533|UniProtKB:Q86SE9150520179 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCGF3Pigmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
PCGF3Pignucleoplasm located_inIEAUniProtKB:Q3KNV8|ensembl:ENSP00000354724150520179 EnsemblGO_REF:0000107
PCGF3Pignucleus located_inIEAUniProtKB:Q3KNV8|ensembl:ENSP00000354724150520179 EnsemblGO_REF:0000107
PCGF3Pignucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
PCGF3PigPcG protein complex part_ofIEAUniProtKB:Q3KNV8|UniProtKB:Q8BTQ0|ensembl:ENSMUSP00000041790|ensembl:ENSP00000354724150520179 EnsemblGO_REF:0000107
PCGF3PigPcG protein complex part_ofIEAARBA:ARBA00026510150520179 UniProtGO_REF:0000117
PCGF3PigPRC1 complex part_ofIBAPANTHER:PTN000088533|UniProtKB:Q9BYE7150520179 GO_CentralGO_REF:0000033
PCGF3PigX chromosome located_inIEAUniProtKB:Q8BTQ0|ensembl:ENSMUSP00000041790150520179 EnsemblGO_REF:0000107

Molecular Function
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCGF3Pighistone H2AK119 ubiquitin ligase activity enablesIEAUniProtKB:Q8BTQ0|ensembl:ENSMUSP00000041790150520179 EnsemblGO_REF:0000107
PCGF3Pigmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
PCGF3Pigprotein binding enablesISOUniProtKB:O959319068941 PMID:33961781IntActPMID:33961781
PCGF3Pigprotein binding enablesISOUniProtKB:Q9CQJ49068941 PMID:28596365UniProtPMID:28596365
PCGF3Pigprotein binding enablesISOUniProtKB:Q06587|UniProtKB:Q99496|UniProtKB:Q9HC529068941 PMID:27705803IntActPMID:27705803
PCGF3Pigprotein binding enablesISOUniProtKB:Q6W2J9-4|UniProtKB:Q8IXK09068941 PMID:25416956IntActPMID:25416956
PCGF3Pigprotein binding enablesISOUniProtKB:P78364|UniProtKB:Q06587|UniProtKB:Q994969068941 PMID:32296183IntActPMID:32296183
PCGF3Pigprotein binding enablesISOUniProtKB:O95503|UniProtKB:O95931|UniProtKB:Q9HC529068941 PMID:21282530IntActPMID:21282530
PCGF3Pigprotein binding enablesISOUniProtKB:Q06587|UniProtKB:Q994969068941 PMID:22493164, PMID:24981860IntActPMID:22493164|PMID:24981860
PCGF3Pigzinc ion binding enablesIEAUniProtKB-KW:KW-0863150520179 UniProtGO_REF:0000043
1 to 10 of 10 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCGF3Pighistone modification pathway   ISORGD:13440339068941 RGDPMID:23473600|PMID:25065329|REF_RGD_ID:9479058|REF_RGD_ID:9479060
PMID:30032202  



PCGF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8140,446 - 182,261 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18140,435 - 189,796 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2880,086 - 128,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCGF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384705,832 - 770,089 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4705,748 - 770,089 (+)EnsemblGRCh38hg38GRCh38
GRCh374699,621 - 763,877 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364689,573 - 754,428 (+)NCBINCBI36Build 36hg18NCBI36
Build 344689,572 - 754,255NCBI
Celera4654,586 - 701,073 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef4674,466 - 735,220 (+)NCBIHuRef
CHM1_14699,353 - 761,389 (+)NCBICHM1_1
T2T-CHM13v2.04705,458 - 767,880 (+)NCBIT2T-CHM13v2.0
Pcgf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,609,082 - 108,654,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,609,098 - 108,654,842 (+)EnsemblGRCm39 Ensembl
GRCm385108,461,259 - 108,506,976 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,461,232 - 108,506,976 (+)EnsemblGRCm38mm10GRCm38
MGSCv375108,890,351 - 108,932,118 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,701,634 - 108,743,401 (+)NCBIMGSCv36mm8
Celera5105,582,876 - 105,624,630 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.13NCBI
Pcgf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,381,976 - 1,436,709 (-)NCBIGRCr8
mRatBN7.2141,237,594 - 1,291,717 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,233,947 - 1,291,793 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx141,136,329 - 1,173,467 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0142,438,091 - 2,475,222 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,134,803 - 1,171,901 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,247,805 - 2,297,155 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,247,808 - 2,297,155 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,242,206 - 2,295,509 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,824,819 - 1,839,263 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,784,275 - 1,835,105 (-)NCBI
Celera141,276,942 - 1,313,583 (-)NCBICelera
Cytogenetic Map14p22NCBI
Pcgf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514307,332 - 350,039 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955514307,331 - 350,039 (+)NCBIChiLan1.0ChiLan1.0
PCGF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,015,288 - 1,086,487 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14973,254 - 1,043,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04802,990 - 874,063 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14746,147 - 805,443 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4746,137 - 805,443 (+)Ensemblpanpan1.1panPan2
PCGF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,673,424 - 91,708,751 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,676,496 - 91,708,754 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha394,138,937 - 94,187,941 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,673,047 - 92,722,052 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl392,673,047 - 92,722,019 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1391,844,192 - 91,893,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,900,171 - 91,949,129 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0392,281,790 - 92,330,796 (-)NCBIUU_Cfam_GSD_1.0
Pcgf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,647,474 - 68,671,564 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,349,171 - 22,373,393 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,349,166 - 22,373,256 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCGF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12748,015,976 - 48,077,688 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2748,020,010 - 48,053,520 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660514,401,028 - 4,463,055 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcgf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,294,689 - 26,326,318 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,294,675 - 26,344,864 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in PCGF3
753 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000030851   ⟹   ENSSSCP00000021018
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8140,446 - 182,261 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000082128   ⟹   ENSSSCP00000063169
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8140,548 - 176,933 (+)Ensembl
RefSeq Acc Id: XM_021100823   ⟹   XP_020956482
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18140,437 - 185,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100824   ⟹   XP_020956483
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18140,437 - 185,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100825   ⟹   XP_020956484
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18140,437 - 185,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100826   ⟹   XP_020956485
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18140,435 - 180,221 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100827   ⟹   XP_020956486
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18140,436 - 180,221 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100828   ⟹   XP_020956487
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18140,436 - 189,796 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020956485   ⟸   XM_021100826
- Peptide Label: isoform X2
- UniProtKB: A0A8D1KWF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956487   ⟸   XM_021100828
- Peptide Label: isoform X4
- UniProtKB: A0A8D1KWF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956486   ⟸   XM_021100827
- Peptide Label: isoform X3
- UniProtKB: A0A8D1KWF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956483   ⟸   XM_021100824
- Peptide Label: isoform X1
- UniProtKB: A0A8D1KWF1 (UniProtKB/TrEMBL),   A0A4X1T6D0 (UniProtKB/TrEMBL),   I3LAF0 (UniProtKB/TrEMBL),   A0A8D0UT64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956484   ⟸   XM_021100825
- Peptide Label: isoform X1
- UniProtKB: A0A8D1KWF1 (UniProtKB/TrEMBL),   A0A4X1T6D0 (UniProtKB/TrEMBL),   I3LAF0 (UniProtKB/TrEMBL),   A0A8D0UT64 (UniProtKB/TrEMBL)
- Sequence:
RING-type



1 to 40 of 54 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000029983 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015004267 UniProtKB/TrEMBL
  ENSSSCG00025047296 UniProtKB/TrEMBL
  ENSSSCG00030073546 UniProtKB/TrEMBL
  ENSSSCG00035070826 UniProtKB/TrEMBL
  ENSSSCG00040068344 UniProtKB/TrEMBL
  ENSSSCG00045014186 UniProtKB/TrEMBL
  ENSSSCG00050002572 UniProtKB/TrEMBL
  ENSSSCG00055009212 UniProtKB/TrEMBL
  ENSSSCG00060027085 UniProtKB/TrEMBL
  ENSSSCG00065063580 UniProtKB/TrEMBL
  ENSSSCG00070006574 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030851 ENTREZGENE
  ENSSSCT00000030851.3 UniProtKB/TrEMBL
  ENSSSCT00000082128.1 UniProtKB/TrEMBL
  ENSSSCT00015005675.1 UniProtKB/TrEMBL
  ENSSSCT00025064311.1 UniProtKB/TrEMBL
  ENSSSCT00030102998.1 UniProtKB/TrEMBL
  ENSSSCT00035095722.1 UniProtKB/TrEMBL
  ENSSSCT00035095763.1 UniProtKB/TrEMBL
  ENSSSCT00035095773.1 UniProtKB/TrEMBL
  ENSSSCT00040093543.1 UniProtKB/TrEMBL
  ENSSSCT00045024145.1 UniProtKB/TrEMBL
  ENSSSCT00045024216.1 UniProtKB/TrEMBL
  ENSSSCT00045024240.1 UniProtKB/TrEMBL
  ENSSSCT00050003250.1 UniProtKB/TrEMBL
  ENSSSCT00055017993.1 UniProtKB/TrEMBL
  ENSSSCT00060036670.1 UniProtKB/TrEMBL
  ENSSSCT00065087230.1 UniProtKB/TrEMBL
  ENSSSCT00070012564.1 UniProtKB/TrEMBL
  ENSSSCT00070012570.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro PcG_RING_finger UniProtKB/TrEMBL
  RAWUL UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene PCGF3 ENTREZGENE
PANTHER POLYCOMB GROUP RING FINGER PROTEIN UniProtKB/TrEMBL
1 to 40 of 54 rows