Pcgf3 (polycomb group ring finger 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Pcgf3 (polycomb group ring finger 3) Heterocephalus glaber
Analyze
Symbol: Pcgf3
Name: polycomb group ring finger 3
RGD ID: 18914108
Description: ENCODES a protein that exhibits histone H2AK119 ubiquitin ligase activity (ortholog); INVOLVED IN random inactivation of X chromosome (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH cherubism (ortholog); genetic disease (ortholog); Mental Retardation, Autosomal Recessive 53 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PcG protein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Polycomb group RING finger protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,294,689 - 26,326,318 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,294,675 - 26,344,864 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Pcgf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,294,689 - 26,326,318 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,294,675 - 26,344,864 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PCGF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384705,832 - 770,089 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4705,748 - 770,089 (+)EnsemblGRCh38hg38GRCh38
GRCh374699,621 - 763,877 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364689,573 - 754,428 (+)NCBINCBI36Build 36hg18NCBI36
Build 344689,572 - 754,255NCBI
Celera4654,586 - 701,073 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef4674,466 - 735,220 (+)NCBIHuRef
CHM1_14699,353 - 761,389 (+)NCBICHM1_1
T2T-CHM13v2.04705,458 - 767,880 (+)NCBIT2T-CHM13v2.0
Pcgf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,609,082 - 108,654,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,609,098 - 108,654,842 (+)EnsemblGRCm39 Ensembl
GRCm385108,461,259 - 108,506,976 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,461,232 - 108,506,976 (+)EnsemblGRCm38mm10GRCm38
MGSCv375108,890,351 - 108,932,118 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,701,634 - 108,743,401 (+)NCBIMGSCv36mm8
Celera5105,582,876 - 105,624,630 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.13NCBI
Pcgf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,381,976 - 1,436,709 (-)NCBIGRCr8
mRatBN7.2141,237,594 - 1,291,717 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,233,947 - 1,291,793 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx141,136,329 - 1,173,467 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0142,438,091 - 2,475,222 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,134,803 - 1,171,901 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,247,805 - 2,297,155 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,247,808 - 2,297,155 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,242,206 - 2,295,509 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,824,819 - 1,839,263 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,784,275 - 1,835,105 (-)NCBI
Celera141,276,942 - 1,313,583 (-)NCBICelera
Cytogenetic Map14p22NCBI
Pcgf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514307,332 - 350,039 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955514307,331 - 350,039 (+)NCBIChiLan1.0ChiLan1.0
PCGF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,015,288 - 1,086,487 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14973,254 - 1,043,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04802,990 - 874,063 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14746,147 - 805,443 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4746,137 - 805,443 (+)Ensemblpanpan1.1panPan2
PCGF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,673,424 - 91,708,751 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,676,496 - 91,708,754 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha394,138,937 - 94,187,941 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,673,047 - 92,722,052 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl392,673,047 - 92,722,019 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1391,844,192 - 91,893,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,900,171 - 91,949,129 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0392,281,790 - 92,330,796 (-)NCBIUU_Cfam_GSD_1.0
Pcgf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,647,474 - 68,671,564 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,349,171 - 22,373,393 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,349,166 - 22,373,256 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCGF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8140,446 - 182,261 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18140,435 - 189,796 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2880,086 - 128,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCGF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12748,015,976 - 48,077,688 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2748,020,010 - 48,053,520 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660514,401,028 - 4,463,055 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010694   ⟹   ENSHGLP00000010575
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475526,294,689 - 26,326,318 (-)Ensembl
RefSeq Acc Id: XM_004847491   ⟹   XP_004847548
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475526,294,675 - 26,344,860 (-)NCBI
RefSeq Acc Id: XM_021260459   ⟹   XP_021116118
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475526,298,616 - 26,344,864 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004847548 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116118 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB07018 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010575
  ENSHGLP00100059419
GenBank Protein JAN97722 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004847548   ⟸   XM_004847491
- Peptide Label: isoform X1
- UniProtKB: G5BCK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116118   ⟸   XM_021260459
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000010575   ⟸   ENSHGLT00000010694


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007583 Ensembl, ENTREZGENE
  ENSHGLG00100043157 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000010694 ENTREZGENE
  ENSHGLT00100044394 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RAWUL UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report hgl:101703010 UniProtKB/TrEMBL
NCBI Gene Pcgf3 ENTREZGENE
PANTHER POLYCOMB GROUP RING FINGER PROTEIN UniProtKB/TrEMBL
  POLYCOMB GROUP RING FINGER PROTEIN 3 UniProtKB/TrEMBL
Pfam RAWUL UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/TrEMBL
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt G5BCK7 ENTREZGENE, UniProtKB/TrEMBL