PAK6 (p21 (RAC1) activated kinase 6) - Rat Genome Database

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Gene: PAK6 (p21 (RAC1) activated kinase 6) Sus scrofa
Analyze
Symbol: PAK6
Name: p21 (RAC1) activated kinase 6
RGD ID: 14011578
Description: ENCODES a protein that exhibits ATP binding (inferred); nucleotide binding (inferred); protein kinase activity (inferred); INVOLVED IN learning (ortholog); locomotory behavior (ortholog); memory (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); clear cell renal cell carcinoma (ortholog); colorectal cancer (ortholog); FOUND IN postsynaptic density (ortholog); INTERACTS WITH deoxynivalenol; zearalenone
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase PAK 6; serine/threonine-protein kinase PAK 6-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1131,039,318 - 131,076,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11131,039,313 - 131,077,420 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21146,145,830 - 146,151,173 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PAK6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1131,039,318 - 131,076,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11131,039,313 - 131,077,420 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21146,145,830 - 146,151,173 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAK6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,239,063 - 40,277,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,217,428 - 40,277,487 (+)EnsemblGRCh38hg38GRCh38
GRCh371540,531,264 - 40,569,688 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,319,368 - 38,356,979 (+)NCBINCBI36Build 36hg18NCBI36
Build 341538,319,367 - 38,356,979NCBI
Celera1517,275,604 - 17,335,680 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,352,605 - 17,412,646 (+)NCBIHuRef
CHM1_11540,629,582 - 40,689,654 (+)NCBICHM1_1
T2T-CHM13v2.01538,045,955 - 38,084,404 (+)NCBIT2T-CHM13v2.0
Pak6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,493,531 - 118,528,501 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,493,784 - 118,528,501 (+)EnsemblGRCm39 Ensembl
GRCm382118,663,045 - 118,698,020 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,663,303 - 118,698,020 (+)EnsemblGRCm38mm10GRCm38
MGSCv372118,489,313 - 118,523,756 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,354,744 - 118,388,677 (+)NCBIMGSCv36mm8
Celera2119,818,133 - 119,852,648 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.41NCBI
Pak6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,092,576 - 126,128,320 (+)NCBIGRCr8
mRatBN7.23105,638,248 - 105,674,399 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,638,653 - 105,672,975 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,312,014 - 109,345,868 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03117,907,575 - 117,941,432 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,567,941 - 115,601,794 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,442,175 - 110,486,317 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,442,637 - 110,487,526 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03116,987,226 - 117,027,426 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,141,150 - 105,191,676 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13105,080,467 - 105,088,577 (+)NCBI
Celera3104,554,473 - 104,587,411 (+)NCBICelera
Cytogenetic Map3q35NCBI
Pak6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,178,524 - 7,212,053 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,190,584 - 7,211,705 (+)NCBIChiLan1.0ChiLan1.0
PAK6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,473,050 - 29,511,489 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,624,528 - 33,662,919 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,173,171 - 19,211,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,441,567 - 37,466,520 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,453,802 - 37,465,119 (+)Ensemblpanpan1.1panPan2
PAK6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,424,410 - 7,462,265 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,425,948 - 7,461,815 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,478,897 - 7,516,220 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,553,994 - 7,588,094 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,577,691 - 7,588,086 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,475,297 - 7,512,646 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,581,248 - 7,618,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,709,827 - 7,747,189 (+)NCBIUU_Cfam_GSD_1.0
Pak6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864085,863,845 - 85,899,290 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364713,713,406 - 3,747,356 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364713,692,058 - 3,747,355 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAK6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,737,848 - 42,798,960 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,737,613 - 42,750,248 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,187,124 - 98,226,525 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pak6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,549,630 - 7,584,567 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248047,549,847 - 7,583,409 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PAK6
695 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium
Low 7 2 3 5 20 1 3 1
Below cutoff 3 3 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000005280   ⟹   ENSSSCP00000005152
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1131,039,705 - 131,076,631 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047256   ⟹   ENSSSCP00000031673
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1131,039,318 - 131,076,631 (-)Ensembl
RefSeq Acc Id: XM_021097786   ⟹   XP_020953445
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11131,039,313 - 131,077,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097791   ⟹   XP_020953450
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11131,039,313 - 131,077,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097802   ⟹   XP_020953461
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11131,039,313 - 131,077,420 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020953445 (Get FASTA)   NCBI Sequence Viewer  
  XP_020953450 (Get FASTA)   NCBI Sequence Viewer  
  XP_020953461 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000005152.5
  ENSSSCP00000031673
  ENSSSCP00000031673.1
  ENSSSCP00025007544.1
RefSeq Acc Id: XP_020953445   ⟸   XM_021097786
- UniProtKB: A0A286ZJP1 (UniProtKB/TrEMBL),   A0A8D0QVT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953450   ⟸   XM_021097791
- UniProtKB: A0A286ZJP1 (UniProtKB/TrEMBL),   A0A8D0QVT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953461   ⟸   XM_021097802
- UniProtKB: A0A286ZJP1 (UniProtKB/TrEMBL),   A0A8D0QVT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005152   ⟸   ENSSSCT00000005280
RefSeq Acc Id: ENSSSCP00000031673   ⟸   ENSSSCT00000047256
Protein Domains
CRIB   Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004781 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025013965 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005280.5 UniProtKB/TrEMBL
  ENSSSCT00000047256 ENTREZGENE
  ENSSSCT00000047256.1 UniProtKB/TrEMBL
  ENSSSCT00025018681.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.810.10 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro CRIB_dom UniProtKB/TrEMBL
  CRIB_dom_sf UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  PAK6 UniProtKB/TrEMBL
  PAK_BD UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
NCBI Gene PAK6 ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE PAK 6 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE TAO UniProtKB/TrEMBL
Pfam PBD UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PROSITE CRIB UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
SMART PBD UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A286ZJP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QVT2 ENTREZGENE, UniProtKB/TrEMBL
  F1SS32_PIG UniProtKB/TrEMBL
VGNC ID VGNC:103144 ENTREZGENE