CD38 (CD38 molecule) - Rat Genome Database

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Gene: CD38 (CD38 molecule) Sus scrofa
Analyze
Symbol: CD38
Name: CD38 molecule
RGD ID: 14007595
Description: ENCODES a protein that exhibits identical protein binding (ortholog); NAD+ nucleotidase, cyclic ADP-ribose generating (ortholog); INVOLVED IN artery smooth muscle contraction (ortholog); B cell proliferation (ortholog); B cell receptor signaling pathway (ortholog); PARTICIPATES IN ADP-ribosylation pathway, cyclic ribosylation; ASSOCIATED WITH Albuminuria (ortholog); Cardiomegaly (ortholog); Diabetic Nephropathies (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); nuclear membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,083,682 - 11,130,756 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,083,682 - 11,130,783 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2810,731,289 - 10,781,193 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:10920241   PMID:14681463   PMID:17145712   PMID:22301074   PMID:26660500   PMID:30032202  


Genomics

Comparative Map Data
CD38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,083,682 - 11,130,756 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,083,682 - 11,130,783 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2810,731,289 - 10,781,193 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38415,778,328 - 15,853,232 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl415,778,275 - 15,853,232 (+)EnsemblGRCh38hg38GRCh38
GRCh37415,779,951 - 15,854,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36415,389,029 - 15,459,806 (+)NCBINCBI36Build 36hg18NCBI36
Build 34415,456,199 - 15,526,975NCBI
Celera416,244,567 - 16,315,338 (+)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,130,537 - 15,200,389 (+)NCBIHuRef
CHM1_1415,777,961 - 15,848,763 (+)NCBICHM1_1
T2T-CHM13v2.0415,760,485 - 15,834,815 (+)NCBIT2T-CHM13v2.0
Cd38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39544,026,153 - 44,069,714 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl544,025,895 - 44,069,717 (+)EnsemblGRCm39 Ensembl
GRCm38543,868,809 - 43,912,374 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,868,553 - 43,912,375 (+)EnsemblGRCm38mm10GRCm38
MGSCv37544,260,066 - 44,303,613 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36544,157,098 - 44,200,622 (+)NCBIMGSCv36mm8
Celera541,298,320 - 41,341,871 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map523.85NCBI
Cd38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,384,532 - 71,424,794 (-)NCBIGRCr8
mRatBN7.21467,172,062 - 67,212,328 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,172,063 - 67,211,986 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1471,579,124 - 71,618,344 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01472,852,696 - 72,892,105 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01469,289,563 - 69,328,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01471,714,768 - 71,754,990 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,715,269 - 71,754,672 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01471,745,754 - 71,786,080 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,320,479 - 72,360,329 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11472,322,869 - 72,362,720 (-)NCBI
Celera1466,130,278 - 66,169,650 (-)NCBICelera
Cytogenetic Map14q21NCBI
Cd38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554808,178,473 - 8,217,643 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554808,177,178 - 8,218,483 (-)NCBIChiLan1.0ChiLan1.0
CD38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2316,068,255 - 16,136,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1416,266,125 - 16,337,568 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0410,228,803 - 10,295,129 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1415,525,835 - 15,587,677 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl415,525,835 - 15,587,677 (+)Ensemblpanpan1.1panPan2
CD38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,529,129 - 64,577,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,529,721 - 64,578,099 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,047,105 - 67,094,978 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0365,007,240 - 65,055,632 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl365,004,679 - 65,056,133 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1364,496,819 - 64,544,484 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,701,068 - 64,748,707 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,061,119 - 65,108,887 (-)NCBIUU_Cfam_GSD_1.0
Cd38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528558,407,127 - 58,454,437 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647712,108,742 - 12,156,248 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647712,109,761 - 12,156,037 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12734,375,859 - 34,449,131 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2734,376,271 - 34,449,425 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604781,109,026 - 81,183,145 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475516,034,771 - 16,093,866 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475516,035,412 - 16,093,610 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD38
2802 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000009565   ⟹   ENSSSCP00000009319
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl811,083,962 - 11,130,781 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000062525   ⟹   ENSSSCP00000058375
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl811,083,682 - 11,125,199 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000070685   ⟹   ENSSSCP00000060180
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl811,083,882 - 11,130,756 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000083631   ⟹   ENSSSCP00000071047
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl811,083,880 - 11,130,748 (+)Ensembl
RefSeq Acc Id: NM_001243883   ⟹   NP_001230812
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,083,682 - 11,130,783 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001230812   ⟸   NM_001243883
- UniProtKB: A0A4X1V968 (UniProtKB/TrEMBL),   A0A5G2QDP6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000009319   ⟸   ENSSSCT00000009565
Ensembl Acc Id: ENSSSCP00000071047   ⟸   ENSSSCT00000083631
Ensembl Acc Id: ENSSSCP00000060180   ⟸   ENSSSCT00000070685
Ensembl Acc Id: ENSSSCP00000058375   ⟸   ENSSSCT00000062525


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025039431 UniProtKB/TrEMBL
  ENSSSCG00035071314 UniProtKB/TrEMBL
  ENSSSCG00040061273 UniProtKB/TrEMBL
  ENSSSCG00070023475 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000062525.2 UniProtKB/TrEMBL
  ENSSSCT00000070685 ENTREZGENE
  ENSSSCT00000070685.1 UniProtKB/TrEMBL
  ENSSSCT00000083631.2 UniProtKB/TrEMBL
  ENSSSCT00025053580.1 UniProtKB/TrEMBL
  ENSSSCT00025053675.1 UniProtKB/TrEMBL
  ENSSSCT00025053725.1 UniProtKB/TrEMBL
  ENSSSCT00035096391.1 UniProtKB/TrEMBL
  ENSSSCT00035096411.1 UniProtKB/TrEMBL
  ENSSSCT00035096429.1 UniProtKB/TrEMBL
  ENSSSCT00035096439.1 UniProtKB/TrEMBL
  ENSSSCT00040083353.1 UniProtKB/TrEMBL
  ENSSSCT00040083474.1 UniProtKB/TrEMBL
  ENSSSCT00040083558.1 UniProtKB/TrEMBL
  ENSSSCT00040083682.1 UniProtKB/TrEMBL
  ENSSSCT00040083818.1 UniProtKB/TrEMBL
  ENSSSCT00070046789.1 UniProtKB/TrEMBL
  ENSSSCT00070046796.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro ADP-ribosyl_cyclase UniProtKB/TrEMBL
NCBI Gene CD38 ENTREZGENE
PANTHER PTHR10912 UniProtKB/TrEMBL
  PTHR10912:SF5 UniProtKB/TrEMBL
Pfam Rib_hydrolayse UniProtKB/TrEMBL
Superfamily-SCOP N-(deoxy)ribosyltransferase-like UniProtKB/TrEMBL
UniProt A0A287BQC6_PIG UniProtKB/TrEMBL
  A0A4X1V968 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VCX4_PIG UniProtKB/TrEMBL
  A0A5G2QDP6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RHX5_PIG UniProtKB/TrEMBL
  A0A8D0UR33_PIG UniProtKB/TrEMBL
  A0A8D1AW30_PIG UniProtKB/TrEMBL
  A0A8D1B0U3_PIG UniProtKB/TrEMBL
  A0A8D1B935_PIG UniProtKB/TrEMBL
  A0A8D1FGA0_PIG UniProtKB/TrEMBL
  A0A8D1KHS6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86412 ENTREZGENE