TRPM7 (transient receptor potential cation channel subfamily M member 7) - Rat Genome Database

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Gene: TRPM7 (transient receptor potential cation channel subfamily M member 7) Sus scrofa
Analyze
Symbol: TRPM7
Name: transient receptor potential cation channel subfamily M member 7
RGD ID: 13995424
Description: ENCODES a protein that exhibits calcium channel activity (ortholog); monoatomic cation channel activity (ortholog); protein kinase activity (ortholog); INVOLVED IN actomyosin structure organization (ortholog); calcium ion transport (ortholog); calcium-dependent cell-matrix adhesion (ortholog); ASSOCIATED WITH adenoma (ortholog); amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis-parkinsonism/dementia complex 1 (ortholog); FOUND IN neuronal cell body (ortholog); synaptic vesicle membrane (ortholog); varicosity (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,146,117 - 121,250,224 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11121,146,093 - 121,250,227 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21134,584,969 - 134,689,668 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202   PMID:34445449  


Genomics

Comparative Map Data
TRPM7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,146,117 - 121,250,224 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11121,146,093 - 121,250,227 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21134,584,969 - 134,689,668 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPM7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381550,557,158 - 50,686,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1550,552,473 - 50,686,797 (-)EnsemblGRCh38hg38GRCh38
GRCh371550,849,355 - 50,978,994 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361548,639,782 - 48,766,286 (-)NCBINCBI36Build 36hg18NCBI36
Build 341548,639,782 - 48,766,260NCBI
Celera1527,741,918 - 27,871,940 (-)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1527,680,107 - 27,809,975 (-)NCBIHuRef
CHM1_11550,967,308 - 51,096,974 (-)NCBICHM1_1
T2T-CHM13v2.01548,365,238 - 48,493,853 (-)NCBIT2T-CHM13v2.0
Trpm7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392126,633,478 - 126,718,181 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2126,633,485 - 126,718,150 (-)EnsemblGRCm39 Ensembl
GRCm382126,791,558 - 126,876,261 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2126,791,565 - 126,876,230 (-)EnsemblGRCm38mm10GRCm38
MGSCv372126,617,294 - 126,701,997 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,483,006 - 126,567,652 (-)NCBIMGSCv36mm8
Celera2128,031,446 - 128,117,211 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
Trpm7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,499,617 - 134,588,113 (-)NCBIGRCr8
mRatBN7.23114,046,258 - 114,134,799 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,046,258 - 114,135,190 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3117,929,825 - 118,020,772 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,525,352 - 126,616,298 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,185,735 - 124,276,677 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,258,189 - 119,347,084 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,259,467 - 119,330,345 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03125,783,080 - 125,871,514 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,320,799 - 114,410,498 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13114,227,081 - 114,234,961 (-)NCBI
Celera3112,886,549 - 112,974,913 (-)NCBICelera
Cytogenetic Map3q36NCBI
Trpm7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554093,691,039 - 3,785,908 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554093,690,722 - 3,787,139 (+)NCBIChiLan1.0ChiLan1.0
TRPM7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21639,808,442 - 39,937,735 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11543,988,947 - 44,115,197 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01529,513,220 - 29,639,506 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11547,852,859 - 47,977,451 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1547,853,187 - 47,977,451 (-)Ensemblpanpan1.1panPan2
TRPM7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13016,465,546 - 16,579,874 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3016,466,234 - 16,579,594 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3016,391,627 - 16,505,679 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03016,609,528 - 16,723,877 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3016,609,860 - 16,723,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13016,531,991 - 16,646,305 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03016,650,052 - 16,764,406 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03016,756,456 - 16,870,962 (-)NCBIUU_Cfam_GSD_1.0
Trpm7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864094,716,326 - 94,818,173 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647112,565,054 - 12,665,962 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647112,564,617 - 12,666,229 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPM7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12632,644,637 - 32,772,753 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2632,669,187 - 32,771,378 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048108,383,877 - 108,505,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpm7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247319,491,157 - 9,588,346 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247319,490,885 - 9,588,255 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRPM7
1621 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000005121   ⟹   ENSSSCP00000004997
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,146,117 - 121,250,224 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000050675   ⟹   ENSSSCP00000038017
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,146,126 - 121,249,908 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000055327   ⟹   ENSSSCP00000058791
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,146,162 - 121,250,200 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000059656   ⟹   ENSSSCP00000059261
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,146,115 - 121,250,224 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000064891   ⟹   ENSSSCP00000056602
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,146,115 - 121,250,224 (+)Ensembl
RefSeq Acc Id: XM_003121515   ⟹   XP_003121563
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,146,098 - 121,250,225 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013993003   ⟹   XP_013848457
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,146,393 - 121,250,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095609   ⟹   XP_020951268
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,146,393 - 121,250,220 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095614   ⟹   XP_020951273
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,146,093 - 121,250,220 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003121563 (Get FASTA)   NCBI Sequence Viewer  
  XP_013848457 (Get FASTA)   NCBI Sequence Viewer  
  XP_020951268 (Get FASTA)   NCBI Sequence Viewer  
  XP_020951273 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACD93210 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000004997
  ENSSSCP00000004997.5
  ENSSSCP00005044253.1
  ENSSSCP00005044308.1
  ENSSSCP00005044331.1
  ENSSSCP00015020169.1
  ENSSSCP00015020221.1
  ENSSSCP00015020327.1
  ENSSSCP00015020421.1
  ENSSSCP00025009622.1
  ENSSSCP00025009661.1
  ENSSSCP00025009692.1
  ENSSSCP00025009730.1
  ENSSSCP00030013284.1
  ENSSSCP00030013293.1
  ENSSSCP00030013317.1
  ENSSSCP00030013340.1
  ENSSSCP00030013353.1
  ENSSSCP00030013394.1
  ENSSSCP00035033125.1
  ENSSSCP00035033138.1
  ENSSSCP00035033147.1
  ENSSSCP00035033160.1
  ENSSSCP00040036829.1
  ENSSSCP00040037032.1
  ENSSSCP00040037206.1
  ENSSSCP00040037465.1
  ENSSSCP00045015107.1
  ENSSSCP00045015141.1
  ENSSSCP00045015199.1
  ENSSSCP00045015231.1
  ENSSSCP00050011782.1
  ENSSSCP00050011792.1
  ENSSSCP00050011805.1
  ENSSSCP00050011812.1
  ENSSSCP00055020674.1
  ENSSSCP00055020784.1
  ENSSSCP00055020977.1
  ENSSSCP00055021140.1
  ENSSSCP00055021331.1
  ENSSSCP00055021549.1
  ENSSSCP00060029883.1
  ENSSSCP00060029888.1
  ENSSSCP00060029892.1
  ENSSSCP00060029896.1
  ENSSSCP00065035659.1
  ENSSSCP00065035664.1
  ENSSSCP00065035671.1
  ENSSSCP00065035674.1
  ENSSSCP00070007078.1
  ENSSSCP00070007092.1
  ENSSSCP00070007116.1
  ENSSSCP00070007137.1
  ENSSSCP00070007151.1
  ENSSSCP00070007172.1
  ENSSSCP00070007199.1
  ENSSSCP00070007225.1
RefSeq Acc Id: XP_020951273   ⟸   XM_021095614
- Peptide Label: isoform X4
- UniProtKB: A0A4X1SVR4 (UniProtKB/TrEMBL),   A0A4X1SXH3 (UniProtKB/TrEMBL),   A0A8D0VYE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003121563   ⟸   XM_003121515
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SXJ2 (UniProtKB/TrEMBL),   A0A4X1SXH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013848457   ⟸   XM_013993003
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SXH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951268   ⟸   XM_021095609
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SXH3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000056602   ⟸   ENSSSCT00000064891
Ensembl Acc Id: ENSSSCP00000038017   ⟸   ENSSSCT00000050675
Ensembl Acc Id: ENSSSCP00000004997   ⟸   ENSSSCT00000005121
Ensembl Acc Id: ENSSSCP00000059261   ⟸   ENSSSCT00000059656
Ensembl Acc Id: ENSSSCP00000058791   ⟸   ENSSSCT00000055327
Protein Domains
Alpha-type protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004636 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044156 UniProtKB/TrEMBL
  ENSSSCG00015037948 UniProtKB/TrEMBL
  ENSSSCG00025017091 UniProtKB/TrEMBL
  ENSSSCG00030021304 UniProtKB/TrEMBL
  ENSSSCG00035059967 UniProtKB/TrEMBL
  ENSSSCG00040061955 UniProtKB/TrEMBL
  ENSSSCG00045012879 UniProtKB/TrEMBL
  ENSSSCG00050021114 UniProtKB/TrEMBL
  ENSSSCG00055013201 UniProtKB/TrEMBL
  ENSSSCG00060051015 UniProtKB/TrEMBL
  ENSSSCG00065059774 UniProtKB/TrEMBL
  ENSSSCG00070004245 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005121 ENTREZGENE
  ENSSSCT00000005121.5 UniProtKB/TrEMBL
  ENSSSCT00005071002.1 UniProtKB/TrEMBL
  ENSSSCT00005071098.1 UniProtKB/TrEMBL
  ENSSSCT00005071127.1 UniProtKB/TrEMBL
  ENSSSCT00015050549.1 UniProtKB/TrEMBL
  ENSSSCT00015050673.1 UniProtKB/TrEMBL
  ENSSSCT00015050924.1 UniProtKB/TrEMBL
  ENSSSCT00015051201.1 UniProtKB/TrEMBL
  ENSSSCT00025023070.1 UniProtKB/TrEMBL
  ENSSSCT00025023141.1 UniProtKB/TrEMBL
  ENSSSCT00025023199.1 UniProtKB/TrEMBL
  ENSSSCT00025023285.1 UniProtKB/TrEMBL
  ENSSSCT00030029576.1 UniProtKB/TrEMBL
  ENSSSCT00030029589.1 UniProtKB/TrEMBL
  ENSSSCT00030029647.1 UniProtKB/TrEMBL
  ENSSSCT00030029707.1 UniProtKB/TrEMBL
  ENSSSCT00030029746.1 UniProtKB/TrEMBL
  ENSSSCT00030029825.1 UniProtKB/TrEMBL
  ENSSSCT00035080386.1 UniProtKB/TrEMBL
  ENSSSCT00035080407.1 UniProtKB/TrEMBL
  ENSSSCT00035080421.1 UniProtKB/TrEMBL
  ENSSSCT00035080442.1 UniProtKB/TrEMBL
  ENSSSCT00040084426.1 UniProtKB/TrEMBL
  ENSSSCT00040084822.1 UniProtKB/TrEMBL
  ENSSSCT00040085133.1 UniProtKB/TrEMBL
  ENSSSCT00040085606.1 UniProtKB/TrEMBL
  ENSSSCT00045021942.1 UniProtKB/TrEMBL
  ENSSSCT00045021989.1 UniProtKB/TrEMBL
  ENSSSCT00045022058.1 UniProtKB/TrEMBL
  ENSSSCT00045022102.1 UniProtKB/TrEMBL
  ENSSSCT00050028471.1 UniProtKB/TrEMBL
  ENSSSCT00050028486.1 UniProtKB/TrEMBL
  ENSSSCT00050028518.1 UniProtKB/TrEMBL
  ENSSSCT00050028531.1 UniProtKB/TrEMBL
  ENSSSCT00055026011.1 UniProtKB/TrEMBL
  ENSSSCT00055026162.1 UniProtKB/TrEMBL
  ENSSSCT00055026403.1 UniProtKB/TrEMBL
  ENSSSCT00055026596.1 UniProtKB/TrEMBL
  ENSSSCT00055026840.1 UniProtKB/TrEMBL
  ENSSSCT00055027098.1 UniProtKB/TrEMBL
  ENSSSCT00060069413.1 UniProtKB/TrEMBL
  ENSSSCT00060069424.1 UniProtKB/TrEMBL
  ENSSSCT00060069430.1 UniProtKB/TrEMBL
  ENSSSCT00060069436.1 UniProtKB/TrEMBL
  ENSSSCT00065081871.1 UniProtKB/TrEMBL
  ENSSSCT00065081893.1 UniProtKB/TrEMBL
  ENSSSCT00065081900.1 UniProtKB/TrEMBL
  ENSSSCT00065081905.1 UniProtKB/TrEMBL
  ENSSSCT00070008598.1 UniProtKB/TrEMBL
  ENSSSCT00070008613.1 UniProtKB/TrEMBL
  ENSSSCT00070008639.1 UniProtKB/TrEMBL
  ENSSSCT00070008667.1 UniProtKB/TrEMBL
  ENSSSCT00070008689.1 UniProtKB/TrEMBL
  ENSSSCT00070008725.1 UniProtKB/TrEMBL
  ENSSSCT00070008762.1 UniProtKB/TrEMBL
  ENSSSCT00070008796.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1010 UniProtKB/TrEMBL
  MHCK/EF2 kinase UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  MHCK_EF2_kinase UniProtKB/TrEMBL
  TRPM UniProtKB/TrEMBL
  TRPM7 UniProtKB/TrEMBL
  TRPM_SLOG UniProtKB/TrEMBL
  TRPM_tetra UniProtKB/TrEMBL
  TRPM_tetra_sf UniProtKB/TrEMBL
KEGG Report ssc:100169932 UniProtKB/TrEMBL
NCBI Gene TRPM7 ENTREZGENE
PANTHER PTHR13800:SF8 UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 UniProtKB/TrEMBL
Pfam Alpha_kinase UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  LSDAT_euk UniProtKB/TrEMBL
  TRPM_tetra UniProtKB/TrEMBL
PROSITE ALPHA_KINASE UniProtKB/TrEMBL
SMART Alpha_kinase UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A4X1SVR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SW55_PIG UniProtKB/TrEMBL
  A0A4X1SX74_PIG UniProtKB/TrEMBL
  A0A4X1SXD5_PIG UniProtKB/TrEMBL
  A0A4X1SXH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXI4_PIG UniProtKB/TrEMBL
  A0A4X1SXJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXL5_PIG UniProtKB/TrEMBL
  A0A8D0VYE7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FLA3_PIG UniProtKB/TrEMBL
  A0A8D1HAI8_PIG UniProtKB/TrEMBL
  F1RYM3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94470 ENTREZGENE