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Gene: C10H1orf115 (chromosome 10 C1orf115 homolog) Sus scrofa

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Symbol:

C10H1orf115 (Ensembl: C1orf115)

Name:

chromosome 10 C1orf115 homolog

RGD ID:

13899026

Description:

INVOLVED IN regulation of response to drug (inferred); ASSOCIATED WITH COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); Loeys-Dietz syndrome 4 (ortholog); FOUND IN 9+0 non-motile cilium (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

uncharacterized protein C1orf115 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	10,115,923 - 10,127,714 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	10,115,917 - 10,127,722 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	12,317,346 - 12,329,153 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

gastrointestinal stromal tumor (ISO)

Loeys-Dietz syndrome 4 (ISO)

Martsolf Syndrome (ISO)

parathyroid carcinoma (ISO)

Usher syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of response to drug (IEA)

Cellular Component

9+0 non-motile cilium (IEA)

References

Genomics

Comparative Map Data

C10H1orf115
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	10,115,923 - 10,127,714 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	10,115,917 - 10,127,722 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	12,317,346 - 12,329,153 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C1orf115
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	220,690,363 - 220,699,153 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	220,690,363 - 220,699,153 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	220,863,705 - 220,872,495 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	218,930,251 - 218,939,122 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	194,082,992 - 194,091,863 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI
HuRef	1	191,538,249 - 191,547,115 (+)	NCBI		HuRef
CHM1_1	1	222,136,076 - 222,144,946 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	219,930,068 - 219,938,857 (+)	NCBI		T2T-CHM13v2.0

C130074G19Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	184,604,123 - 184,615,233 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	184,604,123 - 184,615,415 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	184,871,926 - 184,883,036 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	184,871,926 - 184,883,218 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	186,695,805 - 186,706,915 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	186,572,714 - 186,583,802 (-)	NCBI		MGSCv36	mm8
Celera	1	191,834,798 - 191,845,748 (-)	NCBI		Celera
Cytogenetic Map	1	H5	NCBI
cM Map	1	89.22	NCBI

C13h1orf115
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	98,953,841 - 98,963,577 (-)	NCBI		GRCr8
mRatBN7.2	13	96,422,308 - 96,432,044 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	96,422,302 - 96,432,068 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	98,928,570 - 98,938,306 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	100,327,408 - 100,337,144 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	97,510,809 - 97,520,545 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	102,780,885 - 102,790,621 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	102,780,877 - 102,790,639 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	107,456,593 - 107,466,329 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	100,875,932 - 100,885,668 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	101,064,974 - 101,093,525 (-)	NCBI
Celera	13	95,939,418 - 95,949,154 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

CUNH1orf115
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955520	3,064,235 - 3,065,978 (-)	NCBI	ChiLan1.0	ChiLan1.0

C1H1orf115
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	28,700,936 - 28,709,942 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	28,662,763 - 28,671,779 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	196,276,253 - 196,285,549 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	201,311,283 - 201,320,273 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

CUNH1orf115
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	56,326,874 - 56,338,324 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936650	1,575,083 - 1,586,548 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936650	1,575,098 - 1,586,515 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CUNH1orf115
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	8,844,455 - 8,853,459 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666055	9,123,440 - 9,132,712 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH1orf115
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624835	4,112,431 - 4,121,013 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in C10H1orf115
534 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	5	14	12	23	3	6	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003130507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU927960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01113583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000022625 ⟹ ENSSSCP00000023310

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	10	10,115,923 - 10,127,714 (+)	Ensembl

RefSeq Acc Id:

XM_003130507 ⟹ XP_003130555

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	10	10,115,917 - 10,127,722 (+)	NCBI

Sequence:

show sequence

GGGCTGGGCCGGGCAGCAGGTGGGCGGGGGTGGAGGCGCGGGCAGGAGCGCGGGCAGGGAGCAA
AGGTTGCAGTCTTCCAGTACCGACCTCAGCCGGAGGGCGGGCGGCATCATGACGGTGGGAGCCA
GGCTCCGGACCCAGGCGGCGAGCAGCCTCCCGCGCCGCGGGCCCCTCTTCCGGGCGCGAGGGCG
GACCGAGCGGGACGAGGAGGCGGCCGCTATCCTGGAGCATCTGGAGAGCGGGGCCGAGGAGGAG
GAGAGCGCGGAGCGCGCGCGGCTCCCGGGGACCCGGGGCGCGCGGAAGGTGCACCTGGCCGTCC
TCCCCGAGCGCTACGAGCCGCTGGAGGAGCCAGCGCCCGGCGACAAGCCCAAGAAGAAGTACCG
GCAGAAGCTGAAGAAGTACGGCAAGAACGTCGGGAAGGTTCTCTCCAAAGGATGTCGCTACGTT
GTCGTGGGCCTGCAAGGATTCGCTGCAGCCTACTCTGCTCCCTTCGGAGTCGCCACCAGCGTGG
TGTCCTTTGTCCGCTAGCGGAGACGCCGTGTGAGTGATCGGCAGCCCCCCCGTTCTGGGAACAG
CGTGAACCCAGGAGCATTTCAGACTTGAACCCACAAAATACTTGGAAGAAAAAACAAAACGTCT
TGGTTGAGTCGGATGAGTGGTCTGAACACGTCACCCGCGCCCATCTGCTGAGCTGTCCACGTCT
CCTCTCGGACACGGGTGGCCCCGATGGACAATCCCGCAGAGAATTAGGCTGAAGTCAGGTTTGG
GATGAGAATCGGTTTGCTAAAACCCGAGCCTCCCCTGAAGGTGGCGGTGGGGCGGTGGGGGGGG
GGGTCGCACGGGGGCAAGCACCGGCCAGAAGCCAGCACACTGGGGGGGTAGCTGAGTGGTCGTT
AGGGATGGGGGATGGGGCGGATCTTGATCTGGAGCGAGTGGGCTTGATTTCCTCTATTCTGGAA
AGCTCGAAGGCTGACAGGGCTCTCGGCTCTTGGCTGCCCGGCTTCTAAGGGCACCAAAGGGACC
GTTTGTTTCTGAAGTCACTCCCACACCCATCTCCTTCCTGCACTCCTCTGCCACCAGGAGTTTA
ATTACAGGCTGGAGAAGAAGGAAGGAAGAAACATCTCTTTGAAGGCAACGATGCTTTGAAACCG
GGACTGGCGATGAGTCATGACTGTTGAAAGTAGATGAAGGCTTGTCCTTTTCCTCCCCTTTTTC
TCTGACATGAACGTGGAGGTAGCGATGAGGGGGAGGAGGGTTGGCAAGTTCAAGGGCAGGTGGT
TTGAGGGAGGGAGTGCTCCCGAAGACGGCTGTGTCCAGTCCCGCCCAGGCCGCCCCAGCCACGT
GGCAGGGGCCGGCTGAGGTCGTGGGCCTCCTGCCTTGGCTGCCCGGTACCATCCACGCCCTCCT
CCTCGACACCAGCACCAAGGATGCTCTGCCTTGGGAAGCAGGGAGATGCCACACCCAGAAGTGA
AAGCGGATGACTTAGAGAAGGAGCCGGAAAGTAGGAGACAGGTGCAGAGGGAGCAGAAGAAGGA
TGCTGAACGGGAGAAGAGGAAGCACAGGAGCCGGGGCCGGGTTATCAGCGCTGGAACATCTCAG
GCTCTGGGCAGGGCCAGGGGAGGCTGGGTGGGCAGAGGTGCCGCCATGCTGGTGCTCCCAGACC
TCCTGAGGCCTGTGAGCTCACGCTGGCTGCCTCTGCCACATCCTTTCCCTCTTCTGTGCTGCCC
GGCTAGACATCTCTCAGCTGGATCTGAAGCTGGGCTGGGCAAGGGTCTGTGCCGTTGGACTGCT
GGACAAGGAGGTGCCTGCTGAACCTCCACGGCAGGGCCCTGTTCTGACATGGTTTCCAGAATAT
CCAGAAGCCCAAAAGAGTCACTGAGGACTAGATTGCGGGATCCATGGCAACGGCTGTTTGTTCT
CCTGGTGAGAGTTGCCGGACCAGGCACAGGTGGCCTCAGTGCTCACGCTTCACCCATCAGGCCC
CACCAGGTGGCTCCCAGAAGTGGAGAAGAGGGAAAGACAGACAGACGGACGGACGGAAAGAGGA
ACGAGTGGAGGAGAATGTTGTAGCTGTGAAGCTAGACGCAGCGTCGTGTTTTGGAGGTTCACGC
TGAAGGGGAACTTGGATCCAAGTCCTGCATCGAGAATGTGTGTGAGGAACACGAGAACAGGAAT
GGCCTTGTGTTAGCGCAAATGCTGCAAGTGCACATTTTTGTACACGTAGCATAATCAGAGCTTG
CCTGGTTGCGTGGAGCAAAGGGGAGATGGCGGTGGAAGGAAAAGCAAAGCCTCCCAGCTGAGTG
GGAAAGAGAATCAGACCTGTGTGGCCTCAGGTGACAGGAAAGATGGGCGGCAGGGAGGAGTCTG
GGGCGTTCAGAGGATGCCTTCCTGGTGGCCTGGCGTCGAGTCTGTGACTGGGAGGGACGAGAGC
GGCTGAGGTTCATCTGAGGGAGCCCCCCACCCACAGCCCCACAAATTAGAGACACTATGAGACC
CAACATGTTTGGCCCTGAGGTTTTGAATTCTGGTTGAGAATTAACCTAGAGATTTCCAAAGCCT
GAACTCGCAGGGATTGTCCGGGAGCCACAGTCCTGTCCCAGCAGGTGAGCTGTCACTCCCCGGA
TGGGACACCCGTGCCTCAAATTTCCTCTTTGCCTTTTCTCTCCCTTCCATTTTTGAAACTATTT
ATCAGTGTCCACACCCTACTCAAAACGGAGCTTTTCCTTTTTTGTGCTTGACCAAGAGGCTTCT
TTCATGGGCTTTTCTCGCCCTATTATGTAAATAAAAGCTCTGATTTGTCTAATGTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_003130555	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000023310
	ENSSSCP00000023310.1
	ENSSSCP00015015734.1
	ENSSSCP00025008136.1
	ENSSSCP00030030258.1
	ENSSSCP00035023397.1
	ENSSSCP00040007957.1
	ENSSSCP00045028858.1
	ENSSSCP00050036115.1
	ENSSSCP00055011868.1
	ENSSSCP00060024918.1
	ENSSSCP00065044213.1

RefSeq Acc Id:	XP_003130555 ⟸ XM_003130507
- UniProtKB:	I3LGW6 (UniProtKB/TrEMBL), A0A8D2A9K4 (UniProtKB/TrEMBL), A0A8D0QY74 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVGARLRTQAASSLPRRGPLFRARGRTERDEEAAAILEHLESGAEEEESAERARLPGTRGARK VHLAVLPERYEPLEEPAPGDKPKKKYRQKLKKYGKNVGKVLSKGCRYVVVGLQGFAAAYSAPFG VATSVVSFVR hide sequence

Ensembl Acc Id:

ENSSSCP00000023310 ⟸ ENSSSCT00000022625

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000027882	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015029959	UniProtKB/TrEMBL
	ENSSSCG00025014943	UniProtKB/TrEMBL
	ENSSSCG00030047336	UniProtKB/TrEMBL
	ENSSSCG00035043819	UniProtKB/TrEMBL
	ENSSSCG00040014420	UniProtKB/TrEMBL
	ENSSSCG00045024414	UniProtKB/TrEMBL
	ENSSSCG00050061778	UniProtKB/TrEMBL
	ENSSSCG00055007724	UniProtKB/TrEMBL
	ENSSSCG00060042955	UniProtKB/TrEMBL
	ENSSSCG00065073098	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000022625	ENTREZGENE
	ENSSSCT00000022625.4	UniProtKB/TrEMBL
	ENSSSCT00015039712.1	UniProtKB/TrEMBL
	ENSSSCT00025019971.1	UniProtKB/TrEMBL
	ENSSSCT00030066075.1	UniProtKB/TrEMBL
	ENSSSCT00035058223.1	UniProtKB/TrEMBL
	ENSSSCT00040019274.1	UniProtKB/TrEMBL
	ENSSSCT00045041597.1	UniProtKB/TrEMBL
	ENSSSCT00050084161.1	UniProtKB/TrEMBL
	ENSSSCT00055015091.1	UniProtKB/TrEMBL
	ENSSSCT00060058234.1	UniProtKB/TrEMBL
	ENSSSCT00065100558.1	UniProtKB/TrEMBL
InterPro	DUF4710	UniProtKB/TrEMBL
KEGG Report	ssc:100516689	UniProtKB/TrEMBL
NCBI Gene	C10H1orf115	ENTREZGENE
PANTHER	PTHR14680	UniProtKB/TrEMBL
	SI:DKEY-126G1.9-RELATED	UniProtKB/TrEMBL
Pfam	DUF4710	UniProtKB/TrEMBL
UniProt	A0A8D0QY74	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D2A9K4	ENTREZGENE, UniProtKB/TrEMBL
	I3LGW6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:96111	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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