C1orf115 (chromosome 1 open reading frame 115) - Rat Genome Database

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Gene: C1orf115 (chromosome 1 open reading frame 115) Homo sapiens
Analyze
Symbol: C1orf115
Name: chromosome 1 open reading frame 115
RGD ID: 1605938
HGNC Page HGNC:25873
Description: Involved in regulation of response to drug. Located in 9+0 non-motile cilium.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ14146; hypothetical protein LOC79762; RDD1; Required for Drug-induced Death 1; required for drug-induced death protein 1; RP11-322F10.4; uncharacterized protein C1orf115
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,690,363 - 220,699,153 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,690,363 - 220,699,153 (+)EnsemblGRCh38hg38GRCh38
GRCh371220,863,705 - 220,872,495 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,930,251 - 218,939,122 (+)NCBINCBI36Build 36hg18NCBI36
Celera1194,082,992 - 194,091,863 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1191,538,249 - 191,547,115 (+)NCBIHuRef
CHM1_11222,136,076 - 222,144,946 (+)NCBICHM1_1
T2T-CHM13v2.01219,930,068 - 219,938,857 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:14702039   PMID:15489334   PMID:16344560   PMID:16710414   PMID:21832049   PMID:27503909   PMID:29257953   PMID:32028983   PMID:32694731   PMID:33961781  
PMID:35970996  


Genomics

Comparative Map Data
C1orf115
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,690,363 - 220,699,153 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,690,363 - 220,699,153 (+)EnsemblGRCh38hg38GRCh38
GRCh371220,863,705 - 220,872,495 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,930,251 - 218,939,122 (+)NCBINCBI36Build 36hg18NCBI36
Celera1194,082,992 - 194,091,863 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1191,538,249 - 191,547,115 (+)NCBIHuRef
CHM1_11222,136,076 - 222,144,946 (+)NCBICHM1_1
T2T-CHM13v2.01219,930,068 - 219,938,857 (+)NCBIT2T-CHM13v2.0
C130074G19Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,604,123 - 184,615,233 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,604,123 - 184,615,415 (-)EnsemblGRCm39 Ensembl
GRCm381184,871,926 - 184,883,036 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,871,926 - 184,883,218 (-)EnsemblGRCm38mm10GRCm38
MGSCv371186,695,805 - 186,706,915 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,572,714 - 186,583,802 (-)NCBIMGSCv36mm8
Celera1191,834,798 - 191,845,748 (-)NCBICelera
Cytogenetic Map1H5NCBI
cM Map189.22NCBI
C13h1orf115 
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81398,953,841 - 98,963,577 (-)NCBIGRCr8
mRatBN7.21396,422,308 - 96,432,044 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1396,422,302 - 96,432,068 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1398,928,570 - 98,938,306 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013100,327,408 - 100,337,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01397,510,809 - 97,520,545 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013102,780,885 - 102,790,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13102,780,877 - 102,790,639 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013107,456,593 - 107,466,329 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413100,875,932 - 100,885,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113101,064,974 - 101,093,525 (-)NCBI
Celera1395,939,418 - 95,949,154 (-)NCBICelera
Cytogenetic Map13q26NCBI
CUNH1orf115
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555203,064,235 - 3,065,978 (-)NCBIChiLan1.0ChiLan1.0
C1H1orf115
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2128,700,936 - 28,709,942 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1128,662,763 - 28,671,779 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01196,276,253 - 196,285,549 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11201,311,283 - 201,320,273 (+)NCBIpanpan1.1PanPan1.1panPan2
CUNH1orf115
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934456,326,874 - 56,338,324 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366501,575,083 - 1,586,548 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366501,575,098 - 1,586,515 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C10H1orf115
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1010,115,923 - 10,127,714 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11010,115,917 - 10,127,722 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21012,317,346 - 12,329,153 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH1orf115
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,844,455 - 8,853,459 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660559,123,440 - 9,132,712 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf115
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248354,112,431 - 4,121,013 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C1orf115
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q41(chr1:215206760-222004068)x1 copy number loss See cases [RCV000050298] Chr1:215206760..222004068 [GRCh38]
Chr1:215380103..222177410 [GRCh37]
Chr1:213446726..220244033 [NCBI36]
Chr1:1q41
pathogenic
GRCh38/hg38 1q32.3-44(chr1:214023812-248918469)x3 copy number gain See cases [RCV000050981] Chr1:214023812..248918469 [GRCh38]
Chr1:214197155..249212668 [GRCh37]
Chr1:212263778..247179291 [NCBI36]
Chr1:1q32.3-44
pathogenic
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11
pathogenic
GRCh38/hg38 1q32.2-44(chr1:209646207-248931113)x3 copy number gain See cases [RCV000051861] Chr1:209646207..248931113 [GRCh38]
Chr1:209819552..249225312 [GRCh37]
Chr1:207886175..247191935 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q41(chr1:215447347-221971832)x3 copy number gain See cases [RCV000051874] Chr1:215447347..221971832 [GRCh38]
Chr1:215620690..222145174 [GRCh37]
Chr1:213687313..220211797 [NCBI36]
Chr1:1q41
pathogenic
GRCh38/hg38 1q32.2-44(chr1:209963625-248918469)x3 copy number gain See cases [RCV000134979] Chr1:209963625..248918469 [GRCh38]
Chr1:210136970..249212668 [GRCh37]
Chr1:208203593..247179291 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q41(chr1:220673535-223683512)x1 copy number loss See cases [RCV000135795] Chr1:220673535..223683512 [GRCh38]
Chr1:220846877..223871214 [GRCh37]
Chr1:218913500..221937837 [NCBI36]
Chr1:1q41
pathogenic
GRCh38/hg38 1q32.1-42.12(chr1:204764914-225408698)x3 copy number gain See cases [RCV000142054] Chr1:204764914..225408698 [GRCh38]
Chr1:204734042..225596400 [GRCh37]
Chr1:203000665..223663023 [NCBI36]
Chr1:1q32.1-42.12
pathogenic
GRCh38/hg38 1q32.2-44(chr1:207346642-248930485)x3 copy number gain See cases [RCV000143727] Chr1:207346642..248930485 [GRCh38]
Chr1:207519987..249224684 [GRCh37]
Chr1:205586610..247191307 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q41(chr1:215206760-222004068)x1 copy number loss See cases [RCV000148255] Chr1:215206760..222004068 [GRCh38]
Chr1:215380103..222177410 [GRCh37]
Chr1:213446726..220244033 [NCBI36]
Chr1:1q41
pathogenic
GRCh37/hg19 1q31.3-42.13(chr1:197811907-228997888)x3 copy number gain See cases [RCV000240137] Chr1:197811907..228997888 [GRCh37]
Chr1:1q31.3-42.13
pathogenic
Single allele deletion Loeys-Dietz syndrome 4 [RCV000210452] Chr1:215588712..222145072 [GRCh37]
Chr1:1q41
pathogenic
Single allele deletion Usher syndrome [RCV000505151] Chr1:216066818..222607612 [GRCh38]
Chr1:216240159..222780953 [GRCh37]
Chr1:1q41
likely pathogenic
GRCh37/hg19 1q31.3-44(chr1:195483439-249213000)x3 copy number gain See cases [RCV000449172] Chr1:195483439..249213000 [GRCh37]
Chr1:1q31.3-44
pathogenic
GRCh37/hg19 1q41-44(chr1:214697099-249224684)x3 copy number gain See cases [RCV000449210] Chr1:214697099..249224684 [GRCh37]
Chr1:1q41-44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q41-44(chr1:218252551-249224684)x3 copy number gain not provided [RCV000684700] Chr1:218252551..249224684 [GRCh37]
Chr1:1q41-44
pathogenic
GRCh37/hg19 1q41(chr1:220659314-220984506)x1 copy number loss not provided [RCV000684704] Chr1:220659314..220984506 [GRCh37]
Chr1:1q41
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q25.3-41(chr1:185644663-221698833)x3 copy number gain not provided [RCV000749265] Chr1:185644663..221698833 [GRCh37]
Chr1:1q25.3-41
pathogenic
GRCh37/hg19 1q41(chr1:219379258-222049547)x3 copy number gain not provided [RCV000848714] Chr1:219379258..222049547 [GRCh37]
Chr1:1q41
uncertain significance
GRCh37/hg19 1q41-42.11(chr1:219734913-224104993)x1 copy number loss not provided [RCV001005174] Chr1:219734913..224104993 [GRCh37]
Chr1:1q41-42.11
pathogenic
GRCh37/hg19 1q25.3-44(chr1:182388773-249111240)x3 copy number gain not provided [RCV000845852] Chr1:182388773..249111240 [GRCh37]
Chr1:1q25.3-44
pathogenic
GRCh37/hg19 1q41-43(chr1:219916966-239004378)x3 copy number gain not provided [RCV001005175] Chr1:219916966..239004378 [GRCh37]
Chr1:1q41-43
pathogenic
GRCh37/hg19 1q32.1-44(chr1:204045948-249218992)x3 copy number gain See cases [RCV001007407] Chr1:204045948..249218992 [GRCh37]
Chr1:1q32.1-44
pathogenic
GRCh37/hg19 1q32.2-44(chr1:210152794-249218992)x3 copy number gain See cases [RCV001194578] Chr1:210152794..249218992 [GRCh37]
Chr1:1q32.2-44
pathogenic
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44
uncertain significance
Single allele deletion Loeys-Dietz syndrome 4 [RCV001837015] Chr1:215199578..223035427 [GRCh37]
Chr1:1q41
pathogenic
NC_000001.10:g.(?_218520044)_(220986760_?)del deletion Martsolf syndrome [RCV003116596] Chr1:218520044..220986760 [GRCh37]
Chr1:1q41
pathogenic
NC_000001.10:g.(?_220088791)_(220986760_?)dup duplication not provided [RCV003119870] Chr1:220088791..220986760 [GRCh37]
Chr1:1q41
uncertain significance
GRCh37/hg19 1q31.3-44(chr1:197867914-249224684)x3 copy number gain See cases [RCV002287837] Chr1:197867914..249224684 [GRCh37]
Chr1:1q31.3-44
pathogenic
NM_024709.5(C1orf115):c.261C>G (p.Ser87Arg) single nucleotide variant Inborn genetic diseases [RCV002682006] Chr1:220690663 [GRCh38]
Chr1:220864005 [GRCh37]
Chr1:1q41
uncertain significance
GRCh38/hg38 1q32.2-42.13(chr1:228006998-228061271)x2 copy number loss Orofacial cleft 2 [RCV002481175] Chr1:228006998..228061271 [GRCh38]
Chr1:1q32.2-42.13
association
NM_024709.5(C1orf115):c.301T>C (p.Tyr101His) single nucleotide variant Inborn genetic diseases [RCV002659901] Chr1:220690703 [GRCh38]
Chr1:220864045 [GRCh37]
Chr1:1q41
uncertain significance
NM_024709.5(C1orf115):c.193G>A (p.Gly65Ser) single nucleotide variant Inborn genetic diseases [RCV002978508] Chr1:220690595 [GRCh38]
Chr1:220863937 [GRCh37]
Chr1:1q41
likely benign
NM_024709.5(C1orf115):c.170A>T (p.Asp57Val) single nucleotide variant Inborn genetic diseases [RCV002748368] Chr1:220690572 [GRCh38]
Chr1:220863914 [GRCh37]
Chr1:1q41
likely benign
NM_024709.5(C1orf115):c.260G>A (p.Ser87Asn) single nucleotide variant Inborn genetic diseases [RCV002648780] Chr1:220690662 [GRCh38]
Chr1:220864004 [GRCh37]
Chr1:1q41
uncertain significance
GRCh37/hg19 1q41(chr1:214853277-222111742)x1 copy number loss not provided [RCV003484033] Chr1:214853277..222111742 [GRCh37]
Chr1:1q41
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1131
Count of miRNA genes:721
Interacting mature miRNAs:842
Transcripts:ENST00000294889
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
HSC21A072  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371220,872,236 - 220,872,440UniSTSGRCh37
Build 361218,938,859 - 218,939,063RGDNCBI36
Celera1194,091,600 - 194,091,804RGD
Cytogenetic Map1q41UniSTS
HuRef1191,546,852 - 191,547,056UniSTS
GeneMap99-GB4 RH Map1707.33UniSTS
GeneMap99-GB4 RH Map1706.31UniSTS
Whitehead-RH Map1874.3UniSTS
NCBI RH Map11926.3UniSTS
A004A32  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371220,872,383 - 220,872,484UniSTSGRCh37
Build 361218,939,006 - 218,939,107RGDNCBI36
Celera1194,091,747 - 194,091,848RGD
Cytogenetic Map1q41UniSTS
HuRef1191,546,999 - 191,547,100UniSTS
GeneMap99-GB4 RH Map1706.33UniSTS
NCBI RH Map11926.3UniSTS
SHGC-17189  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371220,872,357 - 220,872,486UniSTSGRCh37
Build 361218,938,980 - 218,939,109RGDNCBI36
Celera1194,091,721 - 194,091,850RGD
Cytogenetic Map1q41UniSTS
HuRef1191,546,973 - 191,547,102UniSTS
Stanford-G3 RH Map18675.0UniSTS
NCBI RH Map11899.1UniSTS
GeneMap99-G3 RH Map18631.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2089 1494 1447 599 584 451 2917 1009 2863 331 1165 1485 153 1203 1684 4
Low 320 1377 266 22 995 12 1424 1160 815 75 275 103 17 1 1104
Below cutoff 14 113 6 1 203 1 6 12 10 6 1 8 1

Sequence


RefSeq Acc Id: ENST00000294889   ⟹   ENSP00000294889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1220,690,363 - 220,699,153 (+)Ensembl
RefSeq Acc Id: NM_024709   ⟹   NP_078985
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381220,690,363 - 220,699,153 (+)NCBI
GRCh371220,863,628 - 220,872,499 (+)RGD
Build 361218,930,251 - 218,939,122 (+)NCBI Archive
Celera1194,082,992 - 194,091,863 (+)RGD
HuRef1191,538,249 - 191,547,115 (+)ENTREZGENE
CHM1_11222,136,076 - 222,144,946 (+)NCBI
T2T-CHM13v2.01219,930,068 - 219,938,857 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_078985 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH36067 (Get FASTA)   NCBI Sequence Viewer  
  BAB14851 (Get FASTA)   NCBI Sequence Viewer  
  BAG52445 (Get FASTA)   NCBI Sequence Viewer  
  EAW93296 (Get FASTA)   NCBI Sequence Viewer  
  EAW93297 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000294889
  ENSP00000294889.5
GenBank Protein Q9H7X2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_078985   ⟸   NM_024709
- UniProtKB: B3KRN3 (UniProtKB/Swiss-Prot),   D3DTB2 (UniProtKB/Swiss-Prot),   Q9H7X2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000294889   ⟸   ENST00000294889

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H7X2-F1-model_v2 AlphaFold Q9H7X2 1-142 view protein structure

Promoters
RGD ID:6784733
Promoter ID:HG_KWN:7410
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:OTTHUMT00000090922
Position:
Human AssemblyChrPosition (strand)Source
Build 361218,930,119 - 218,930,619 (+)MPROMDB
RGD ID:6859030
Promoter ID:EPDNEW_H2679
Type:initiation region
Name:C1orf115_1
Description:chromosome 1 open reading frame 115
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381220,690,386 - 220,690,446EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25873 AgrOrtholog
COSMIC C1orf115 COSMIC
Ensembl Genes ENSG00000162817 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000294889 ENTREZGENE
  ENST00000294889.6 UniProtKB/Swiss-Prot
GTEx ENSG00000162817 GTEx
HGNC ID HGNC:25873 ENTREZGENE
Human Proteome Map C1orf115 Human Proteome Map
InterPro DUF4710 UniProtKB/Swiss-Prot
KEGG Report hsa:79762 UniProtKB/Swiss-Prot
NCBI Gene 79762 ENTREZGENE
PANTHER PTHR14680 UniProtKB/Swiss-Prot
  SI:DKEY-126G1.9-RELATED UniProtKB/Swiss-Prot
Pfam DUF4710 UniProtKB/Swiss-Prot
PharmGKB PA142672499 PharmGKB
UniProt B3KRN3 ENTREZGENE
  CA115_HUMAN UniProtKB/Swiss-Prot
  D3DTB2 ENTREZGENE
  Q9H7X2 ENTREZGENE
UniProt Secondary B3KRN3 UniProtKB/Swiss-Prot
  D3DTB2 UniProtKB/Swiss-Prot