C1H1orf115 (chromosome 1 C1orf115 homolog) - Rat Genome Database

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Gene: C1H1orf115 (chromosome 1 C1orf115 homolog) Pan paniscus
Analyze
Symbol: C1H1orf115
Name: chromosome 1 C1orf115 homolog
RGD ID: 11748709
Description: INVOLVED IN regulation of response to drug (ortholog); ASSOCIATED WITH COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN 9+0 non-motile cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome 1 open reading frame, human C1orf115; required for drug-induced death protein 1; uncharacterized protein C1orf115 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2128,700,936 - 28,709,942 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1128,662,763 - 28,671,779 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01196,276,253 - 196,285,549 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11201,311,283 - 201,320,273 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
C1H1orf115
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2128,700,936 - 28,709,942 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1128,662,763 - 28,671,779 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01196,276,253 - 196,285,549 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11201,311,283 - 201,320,273 (+)NCBIpanpan1.1PanPan1.1panPan2
C1orf115
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,690,363 - 220,699,153 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,690,363 - 220,699,153 (+)EnsemblGRCh38hg38GRCh38
GRCh371220,863,705 - 220,872,495 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,930,251 - 218,939,122 (+)NCBINCBI36Build 36hg18NCBI36
Celera1194,082,992 - 194,091,863 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1191,538,249 - 191,547,115 (+)NCBIHuRef
CHM1_11222,136,076 - 222,144,946 (+)NCBICHM1_1
T2T-CHM13v2.01219,930,068 - 219,938,857 (+)NCBIT2T-CHM13v2.0
C130074G19Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,604,123 - 184,615,233 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,604,123 - 184,615,415 (-)EnsemblGRCm39 Ensembl
GRCm381184,871,926 - 184,883,036 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,871,926 - 184,883,218 (-)EnsemblGRCm38mm10GRCm38
MGSCv371186,695,805 - 186,706,915 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,572,714 - 186,583,802 (-)NCBIMGSCv36mm8
Celera1191,834,798 - 191,845,748 (-)NCBICelera
Cytogenetic Map1H5NCBI
cM Map189.22NCBI
C13h1orf115
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81398,953,841 - 98,963,577 (-)NCBIGRCr8
mRatBN7.21396,422,308 - 96,432,044 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1396,422,302 - 96,432,068 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1398,928,570 - 98,938,306 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013100,327,408 - 100,337,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01397,510,809 - 97,520,545 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013102,780,885 - 102,790,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13102,780,877 - 102,790,639 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013107,456,593 - 107,466,329 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413100,875,932 - 100,885,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113101,064,974 - 101,093,525 (-)NCBI
Celera1395,939,418 - 95,949,154 (-)NCBICelera
Cytogenetic Map13q26NCBI
CUNH1orf115
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555203,064,235 - 3,065,978 (-)NCBIChiLan1.0ChiLan1.0
CUNH1orf115
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934456,326,874 - 56,338,324 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366501,575,083 - 1,586,548 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366501,575,098 - 1,586,515 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C10H1orf115
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1010,115,923 - 10,127,714 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11010,115,917 - 10,127,722 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21012,317,346 - 12,329,153 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH1orf115
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,844,455 - 8,853,459 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660559,123,440 - 9,132,712 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf115
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248354,112,431 - 4,121,013 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_024925588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_024925588   ⟹   XP_024781356
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2128,700,936 - 28,709,942 (-)NCBI
NHGRI_mPanPan1128,662,763 - 28,671,779 (-)NCBI
Mhudiblu_PPA_v01196,276,253 - 196,285,549 (+)NCBI
PanPan1.11201,311,283 - 201,320,273 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_024781356 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_024781356   ⟸   XM_024925588
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene C1H1orf115 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 C1H1orf115  chromosome 1 C1orf115 homolog    chromosome 1 open reading frame, human C1orf115  Symbol and/or name change 5135510 APPROVED