CIART (circadian associated repressor of transcription) - Rat Genome Database

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Gene: CIART (circadian associated repressor of transcription) Sus scrofa
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Symbol: CIART
Name: circadian associated repressor of transcription
RGD ID: 13880870
Description: ENCODES a protein that exhibits E-box binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); transcription cis-regulatory region binding (inferred); INVOLVED IN circadian regulation of gene expression (inferred); locomotor rhythm (inferred); negative regulation of DNA-templated transcription (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: circadian-associated transcriptional repressor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,800,931 - 98,804,739 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,800,849 - 98,809,573 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24108,088,573 - 108,093,770 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CIART
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,800,931 - 98,804,739 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,800,849 - 98,809,573 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24108,088,573 - 108,093,770 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIART
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381150,282,554 - 150,287,093 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1150,282,543 - 150,287,093 (+)EnsemblGRCh38hg38GRCh38
GRCh371150,254,964 - 150,259,505 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,521,853 - 148,526,125 (+)NCBINCBI36Build 36hg18NCBI36
Build 341147,068,301 - 147,072,574NCBI
Celera1123,370,960 - 123,375,233 (+)NCBICelera
Cytogenetic Map1q21.2NCBI
HuRef1121,633,885 - 121,638,163 (+)NCBIHuRef
CHM1_11151,650,945 - 151,655,215 (+)NCBICHM1_1
T2T-CHM13v2.01149,407,478 - 149,412,040 (+)NCBIT2T-CHM13v2.0
Ciart
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,785,812 - 95,790,012 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,785,815 - 95,789,563 (-)EnsemblGRCm39 Ensembl
GRCm38395,878,500 - 95,882,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,878,503 - 95,882,251 (-)EnsemblGRCm38mm10GRCm38
MGSCv37395,682,428 - 95,686,151 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,963,908 - 95,967,633 (-)NCBIMGSCv36mm8
Celera397,312,032 - 97,315,756 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.42NCBI
Ciart
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,108,744 - 186,113,778 (-)NCBIGRCr8
mRatBN7.22183,419,819 - 183,424,845 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,419,819 - 183,423,313 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,084,561 - 191,088,055 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,888,111 - 188,891,608 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,717,098 - 183,720,592 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02197,987,705 - 197,991,198 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2197,987,705 - 197,991,574 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,478,839 - 217,482,049 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,659,555 - 190,663,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2175,949,238 - 175,952,732 (-)NCBICelera
Cytogenetic Map2q34NCBI
Ciart
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955413490,117 - 494,332 (-)NCBIChiLan1.0ChiLan1.0
CIART
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,551,579 - 99,556,149 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,305,525 - 99,310,122 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01125,627,812 - 125,632,367 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,278,742 - 129,283,271 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,278,742 - 129,283,271 (+)Ensemblpanpan1.1panPan2
CIART
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,524,715 - 59,529,535 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,525,987 - 59,529,402 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,971,251 - 58,975,921 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,540,474 - 60,545,124 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,532,582 - 60,545,108 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,370,942 - 59,375,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,454,744 - 59,459,367 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,182,501 - 60,187,143 (+)NCBIUU_Cfam_GSD_1.0
Ciart
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,536,328 - 21,540,785 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936580566,745 - 571,160 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIART
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603813,005,562 - 13,010,479 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ciart
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,037,066 - 18,040,692 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,036,407 - 18,040,571 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CIART
79 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000007292   ⟹   ENSSSCP00000007097
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,800,931 - 98,804,471 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000060285   ⟹   ENSSSCP00000050673
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,800,931 - 98,804,739 (-)Ensembl
RefSeq Acc Id: XM_005655394   ⟹   XP_005655451
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,800,849 - 98,804,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005655395   ⟹   XP_005655452
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,800,849 - 98,804,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089912   ⟹   XP_020945571
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,800,849 - 98,809,573 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089913   ⟹   XP_020945572
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,800,849 - 98,809,573 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020945571   ⟸   XM_021089912
- Peptide Label: isoform X1
- UniProtKB: A0A287ATR8 (UniProtKB/TrEMBL),   A0A8D0SUG2 (UniProtKB/TrEMBL),   F1SS75 (UniProtKB/TrEMBL),   A0A8D1EC18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945572   ⟸   XM_021089913
- Peptide Label: isoform X1
- UniProtKB: A0A287ATR8 (UniProtKB/TrEMBL),   A0A8D0SUG2 (UniProtKB/TrEMBL),   F1SS75 (UniProtKB/TrEMBL),   A0A8D1EC18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655451   ⟸   XM_005655394
- Peptide Label: isoform X2
- UniProtKB: A0A287B3H5 (UniProtKB/TrEMBL),   A0A8D0MAD6 (UniProtKB/TrEMBL),   A0A8D1RXA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655452   ⟸   XM_005655395
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SGQ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000050673   ⟸   ENSSSCT00000060285
Ensembl Acc Id: ENSSSCP00000007097   ⟸   ENSSSCT00000007292


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038374 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015001500 UniProtKB/TrEMBL
  ENSSSCG00025062226 UniProtKB/TrEMBL
  ENSSSCG00030053833 UniProtKB/TrEMBL
  ENSSSCG00035054513 UniProtKB/TrEMBL
  ENSSSCG00040033736 UniProtKB/TrEMBL
  ENSSSCG00045016821 UniProtKB/TrEMBL
  ENSSSCG00050077454 UniProtKB/TrEMBL
  ENSSSCG00055027304 UniProtKB/TrEMBL
  ENSSSCG00060020891 UniProtKB/TrEMBL
  ENSSSCG00065071293 UniProtKB/TrEMBL
  ENSSSCG00070000902 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007292 ENTREZGENE
  ENSSSCT00000007292.5 UniProtKB/TrEMBL
  ENSSSCT00000060285 ENTREZGENE
  ENSSSCT00000060285.3 UniProtKB/TrEMBL
  ENSSSCT00015001889.1 UniProtKB/TrEMBL
  ENSSSCT00015001916.1 UniProtKB/TrEMBL
  ENSSSCT00025085213.1 UniProtKB/TrEMBL
  ENSSSCT00025085368.1 UniProtKB/TrEMBL
  ENSSSCT00030075085.1 UniProtKB/TrEMBL
  ENSSSCT00030075111.1 UniProtKB/TrEMBL
  ENSSSCT00035072740.1 UniProtKB/TrEMBL
  ENSSSCT00035072743.1 UniProtKB/TrEMBL
  ENSSSCT00040045410.1 UniProtKB/TrEMBL
  ENSSSCT00040045448.1 UniProtKB/TrEMBL
  ENSSSCT00040045515.1 UniProtKB/TrEMBL
  ENSSSCT00045028598.1 UniProtKB/TrEMBL
  ENSSSCT00045028642.1 UniProtKB/TrEMBL
  ENSSSCT00050106626.1 UniProtKB/TrEMBL
  ENSSSCT00050106653.1 UniProtKB/TrEMBL
  ENSSSCT00055053950.1 UniProtKB/TrEMBL
  ENSSSCT00055054005.1 UniProtKB/TrEMBL
  ENSSSCT00055054160.1 UniProtKB/TrEMBL
  ENSSSCT00060028327.1 UniProtKB/TrEMBL
  ENSSSCT00060028330.1 UniProtKB/TrEMBL
  ENSSSCT00065097964.1 UniProtKB/TrEMBL
  ENSSSCT00065097974.1 UniProtKB/TrEMBL
  ENSSSCT00070001726.1 UniProtKB/TrEMBL
InterPro Ciart UniProtKB/TrEMBL
KEGG Report ssc:100156195 UniProtKB/TrEMBL
NCBI Gene CIART ENTREZGENE
PANTHER CIRCADIAN-ASSOCIATED TRANSCRIPTIONAL REPRESSOR UniProtKB/TrEMBL
  PTHR35441 UniProtKB/TrEMBL
Pfam Ciart UniProtKB/TrEMBL
UniProt A0A287ATR8 ENTREZGENE
  A0A287B3H5 ENTREZGENE
  A0A4X1SGQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MAD6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SUG2 ENTREZGENE
  A0A8D1EC18 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RXA1 ENTREZGENE, UniProtKB/TrEMBL
  F1SS75 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287ATR8 UniProtKB/TrEMBL
  A0A287B3H5 UniProtKB/TrEMBL
  A0A8D0SUG2 UniProtKB/TrEMBL
VGNC ID VGNC:86694 ENTREZGENE