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Gene: CIART (circadian associated repressor of transcription) Canis lupus familiaris

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Symbol:

CIART

Name:

circadian associated repressor of transcription

RGD ID:

12142127

Description:

ENCODES a protein that exhibits E-box binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); transcription cis-regulatory region binding (inferred); INVOLVED IN circadian regulation of gene expression (inferred); locomotor rhythm (inferred); negative regulation of DNA-templated transcription (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH bisphenol A

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

circadian-associated transcriptional repressor

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	59,524,715 - 59,529,535 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	59,525,987 - 59,529,402 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	58,971,251 - 58,975,921 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	60,540,474 - 60,545,124 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	60,532,582 - 60,545,108 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	59,370,942 - 59,375,587 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	59,454,744 - 59,459,367 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	60,182,501 - 60,187,143 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIART	Dog	gastrointestinal stromal tumor		ISO	RGD:1347816	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
CIART	Dog	immunodeficiency 42		ISO	RGD:1347816	8554872	ClinVar Annotator: match by term: Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete more ...	ClinVar	PMID:28492532
CIART	Dog	MHC class II deficiency		ISO	RGD:1347816	8554872	ClinVar Annotator: match by term: MHC class II deficiency	ClinVar	PMID:28492532
CIART	Dog	parathyroid carcinoma		ISO	RGD:1347816	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
CIART	Dog	severe congenital neutropenia 3		ISO	RGD:1347816	8554872	ClinVar Annotator: match by term: Kostmann syndrome	ClinVar	PMID:28492532
CIART	Dog	severe congenital neutropenia 5		ISO	RGD:1347816	8554872	ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndrome	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIART	Dog	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of CIART mRNA	CTD	PMID:38866337

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIART	Dog	circadian regulation of gene expression	involved_in	IEA	InterPro:IPR031373	150520179		InterPro	GO_REF:0000002
CIART	Dog	circadian regulation of gene expression	involved_in	IBA	MGI:2684975\|PANTHER:PTN002860200	150520179		GO_Central	GO_REF:0000033
CIART	Dog	circadian regulation of gene expression	involved_in	IEA	UniProtKB:Q3TQ03\|ensembl:ENSMUSP00000124943	150520179		Ensembl	GO_REF:0000107
CIART	Dog	locomotor rhythm	involved_in	IEA	UniProtKB:Q3TQ03\|ensembl:ENSMUSP00000124943	150520179		Ensembl	GO_REF:0000107
CIART	Dog	negative regulation of DNA-templated transcription	involved_in	IBA	MGI:2684975\|PANTHER:PTN002860200	150520179		GO_Central	GO_REF:0000033
CIART	Dog	negative regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:Q3TQ03\|ensembl:ENSMUSP00000124943	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIART	Dog	nucleus	located_in	IEA	UniProtKB:Q3TQ03\|ensembl:ENSMUSP00000124943	150520179		Ensembl	GO_REF:0000107
CIART	Dog	nucleus	is_active_in	IBA	MGI:2684975\|PANTHER:PTN002860200	150520179		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIART	Dog	E-box binding	enables	IEA	UniProtKB:Q3TQ03\|ensembl:ENSMUSP00000124943	150520179		Ensembl	GO_REF:0000107
CIART	Dog	protein binding	enables	ISO	UniProtKB:O09106\|UniProtKB:O54943\|UniProtKB:P06537\|UniProtKB:Q99PV5\|UniProtKB:Q9R194\|UniProtKB:Q9WTL8	9068941	PMID:24736997	UniProt	PMID:24736997
CIART	Dog	protein binding	enables	ISO	UniProtKB:O54943\|UniProtKB:Q9WTL8	9068941	PMID:24385426	UniProt	PMID:24385426
CIART	Dog	protein binding	enables	ISO	UniProtKB:O09106\|UniProtKB:O54943\|UniProtKB:Q99PV5\|UniProtKB:Q9R194\|UniProtKB:Q9WTL8	9068941	PMID:24736997	IntAct	PMID:24736997
CIART	Dog	protein binding	enables	ISO	UniProtKB:O54943\|UniProtKB:Q9WTL8	9068941	PMID:24737000	IntAct	PMID:24737000
CIART	Dog	protein binding	enables	ISO	UniProtKB:P13473-2\|UniProtKB:P55212	9068941	PMID:32814053	IntAct	PMID:32814053
CIART	Dog	protein binding	enables	ISO	UniProtKB:O00327	9068941	PMID:24385426	UniProt	PMID:24385426
CIART	Dog	protein binding	enables	ISO	UniProtKB:O75553	9068941	PMID:25416956	IntAct	PMID:25416956
CIART	Dog	protein binding	enables	ISO	UniProtKB:Q13952-2	9068941	PMID:32296183	IntAct	PMID:32296183
CIART	Dog	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IEA	UniProtKB:Q3TQ03\|ensembl:ENSMUSP00000124943	150520179		Ensembl	GO_REF:0000107
CIART	Dog	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IBA	MGI:2684975\|PANTHER:PTN002860200	150520179		GO_Central	GO_REF:0000033
CIART	Dog	transcription cis-regulatory region binding	enables	IEA	InterPro:IPR031373	150520179		InterPro	GO_REF:0000002

PMID:22301074	PMID:30032202

CIART
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	59,524,715 - 59,529,535 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	59,525,987 - 59,529,402 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	58,971,251 - 58,975,921 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	60,540,474 - 60,545,124 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	60,532,582 - 60,545,108 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	59,370,942 - 59,375,587 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	59,454,744 - 59,459,367 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	60,182,501 - 60,187,143 (+)	NCBI		UU_Cfam_GSD_1.0

CIART
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	150,282,554 - 150,287,093 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	150,282,543 - 150,287,093 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	150,254,964 - 150,259,505 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	148,521,853 - 148,526,125 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	147,068,301 - 147,072,574	NCBI
Celera	1	123,370,960 - 123,375,233 (+)	NCBI		Celera
Cytogenetic Map	1	q21.2	NCBI
HuRef	1	121,633,885 - 121,638,163 (+)	NCBI		HuRef
CHM1_1	1	151,650,945 - 151,655,215 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	149,407,478 - 149,412,040 (+)	NCBI		T2T-CHM13v2.0

Ciart
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	95,785,812 - 95,790,012 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	95,785,815 - 95,789,563 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	95,878,500 - 95,882,257 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	95,878,503 - 95,882,251 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	95,682,428 - 95,686,151 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	95,963,908 - 95,967,633 (-)	NCBI		MGSCv36	mm8
Celera	3	97,312,032 - 97,315,756 (-)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	41.42	NCBI

Ciart
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	186,108,744 - 186,113,778 (-)	NCBI		GRCr8
mRatBN7.2	2	183,419,819 - 183,424,845 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	183,419,819 - 183,423,313 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	191,084,561 - 191,088,055 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	188,888,111 - 188,891,608 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	183,717,098 - 183,720,592 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	197,987,705 - 197,991,198 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	197,987,705 - 197,991,574 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	217,478,839 - 217,482,049 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	190,659,555 - 190,663,895 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	175,949,238 - 175,952,732 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Ciart
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955413	490,117 - 494,332 (-)	NCBI	ChiLan1.0	ChiLan1.0

CIART
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	99,551,579 - 99,556,149 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	99,305,525 - 99,310,122 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	125,627,812 - 125,632,367 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	129,278,742 - 129,283,271 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	129,278,742 - 129,283,271 (+)	Ensembl	panpan1.1		panPan2

Ciart
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	21,536,328 - 21,540,785 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936580	566,745 - 571,160 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIART
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	98,800,931 - 98,804,739 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	98,800,849 - 98,809,573 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	108,088,573 - 108,093,770 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CIART
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666038	13,005,562 - 13,010,479 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ciart
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	18,037,066 - 18,040,692 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	18,036,407 - 18,040,571 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in CIART
47 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10


RefSeq Transcripts	XM_003639643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005630746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038423035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038423036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038423037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038453077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038499534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038499535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038499536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038562106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038562107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038562108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038626202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038626203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038626204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000018735 ⟹ ENSCAFP00000017357

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	17	59,525,987 - 59,529,402 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845029874 ⟹ ENSCAFP00845023461

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	17	60,532,582 - 60,545,108 (+)	Ensembl

RefSeq Acc Id:

XM_003639643 ⟹ XP_003639691

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	17	59,524,715 - 59,529,535 (+)	NCBI
Dog10K_Boxer_Tasha	17	58,971,251 - 58,975,921 (+)	NCBI

Sequence:

show sequence

CGGACCTGCGGGTCACGAGGGCCCCGGGGGCGGCCGAGAGACGAGAGGACACACAGGGGCGTCCATCCGTTCTCTCGCACGTTGCACGCCCAAGTCGCCGATGGCTTCCACGTGCGGCCCTCGTGAGA
GGAGGCGCTCAACCGGGAGGGGGGACGGGACCGGAGGGGGGGTGGATCTGCTACTGAGGGGGAGCCGGAGTCCTACTCCCACATCCCAACACGCGCGCCTCCCAGCACACAACCAGTCTGCACACAGT
AACTGCACGTCTCCTGCCCACCACCATCCTATTTAAGGCCACGGGCTCCGCCCTTTCCACTCTTTCCATCCTCCTCCTTTTCTCCTCACCGGGTCCTTCTTGCGAGCCGCATGTAGGGGCGGGGCACG
GAATGCTTCCCTTCCAGCCAATCGTCATCTAGCTGTGTCTCTATTGGCCGAGCCCCTGGAGGCTGTAGCAAATGGGATGCGAACTTGGATAACATGCGTCACGCGCCGCCGACTAGCCAACCAATGAG
GCCGCGAGGTTCTGATCTTTGGGTACTCCGGGAGTTGTTCAGCCCCTGCTTCTGAACCTATGGATTCTCCAGCTAGCGATTACTCCTGTTCTTCCTACTCTCTGTCTTCCTGTCTTTCCACCTCCCCA
GTGAACAGTGACTTTGGCCTCCCGTCAGATAGTGAGGGGGAGGACAAGGGGGCCCATGGCCCCAGGTCAGATCCTGCTGGGCAGAGGGGAGGTTCTCGGCCCAGCCCGGGGCCTATCCGCTGCAGGCA
ACGAACCAAGGTTTCCAGCAACCAACATACAGCATCTCACCTGGAACAGCGGGGCTTGGCCTCTCCTATGGTGGGATCTGGGGTCAAAAAATCAAGAGATGGTGAATTACAGACCAACGTAAACATCC
AAGGTTGTACCACAGAAGGAGACCTGCTCTTTGCTCAGAAGTGTAAAGAGCTCCAAGGATTTATCCGTCCTCTCACAGACCTACTGAATGGGCTGAAGATGGGTCGATTTGAGAGAGGATTGAGCAGT
TTCCAGCAGAGTGTGGCAATGGACAGAATCCAGCGTATTGTAGGTATTTTGCAGAAGCCACAAATGGGGGAGCGTTATCTAGGAACCTTGCTACAGGTAGAAGGGATGTTAAAGACTTGGTTTCCTCA
TATAGCTGCCCAGAAGTCATCATTGAGTAGTAGCAGGCACCAGCTGACCAAGCATTTTCCAAGCCCCCACAGTTACTCAGCTGCTTCTTCTCCTGCACCTCCCCTGGAAAAGATGGACAAGACACAGT
TAGGACATCTACTGCTTAAACCAAAGCAGCCTTGGCACCTCACTGAATGGCCAACTATGCACCTTACTTGGATCCACACCACTCCAATCTGCAACCCCCCCCTCAGTTCCCCAGGTACCATTTCCTTT
AGCCATGGTCCTTTAGGCACTGGAGCCAGCATTGGTGTCATCCTTTTTGTCCAGCATGGAATGCAGCCTTTCACCCACTCTGCCCCAACCACTCCAGTTCCGCCCACCACAGCGTCTCCTGTCATCCC
TGTTGATCCTAAGAAACTCTCTAGAGAGGGACCTCATTGCCACAGTTTGCCAGCAACTCTGCCATCAGACTGGAGCTGTACCCTGTCTGGCCCTGGTCTACCCACTATGGCCAGAGAGATGACCATGG
GACATCTAGAGCAAATGAGAAGCCATCCTCCAGTTGCTCCTGAGGTCCATTCTCTCAACCCCTAATCCAGGACTTGAGACTGTGGTTTCTAATTTGTGTAAATGTATGTCTCTCATATATATTTTTTA
CTTTTCATGTGTACATTTGTGTTGAGGGAAGAGAAGTCCTTTTTGATTAAAGAAATTTTATACCTGAACA

hide sequence

RefSeq Acc Id:

XM_005630746 ⟹ XP_005630803

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	17	59,525,270 - 59,529,535 (+)	NCBI
Dog10K_Boxer_Tasha	17	58,971,615 - 58,975,921 (+)	NCBI

Sequence:

show sequence

GCACGTGTCTGGGAGGGGGGAAGGGGCGGGACCAGTCGGGGAGAGGCAGAGGTGGGCAGCCCCGACCTGCAGAGTTGGAGAAGGAGCGGGAGACAGCCAGGTGGCGGACCGGTACAGGTTCTGATCTT
TGGGTACTCCGGGAGTTGTTCAGCCCCTGCTTCTGAACCTATGGATTCTCCAGCTAGCGATTACTCCTGTTCTTCCTACTCTCTGTCTTCCTGTCTTTCCACCTCCCCAGTGAACAGTGACTTTGGCC
TCCCGTCAGATAGTGAGGGGGAGGACAAGGGGGCCCATGGCCCCAGGTCAGATCCTGCTGGGCAGAGGGGAGGTTCTCGGCCCAGCCCGGGGCCTATCCGCTGCAGGCAACGAACCAAGGTTTCCAGC
AACCAACATACAGCATCTCACCTGGAACAGCGGGGCTTGGCCTCTCCTATGGTGGGATCTGGGGTCAAAAAATCAAGAGATGGTGAATTACAGACCAACGTAAACATCCAAGGTTGTACCACAGAAGG
AGACCTGCTCTTTGCTCAGAAGTGTAAAGAGCTCCAAGGATTTATCCGTCCTCTCACAGACCTACTGAATGGGCTGAAGATGGGTCGATTTGAGAGAGGATTGAGCAGTTTCCAGCAGAGTGTGGCAA
TGGACAGAATCCAGCGTATTGTAGGTATTTTGCAGAAGCCACAAATGGGGGAGCGTTATCTAGGAACCTTGCTACAGGTAGAAGGGATGTTAAAGACTTGGTTTCCTCATATAGCTGCCCAGAAGTCA
TCATTGAGTAGTAGCAGGCACCAGCTGACCAAGCATTTTCCAAGCCCCCACAGTTACTCAGCTGCTTCTTCTCCTGCACCTCCCCTGGAAAAGATGGACAAGACACAGTTAGGACATCTACTGCTTAA
ACCAAAGCAGCCTTGGCACCTCACTGAATGGCCAACTATGCACCTTACTTGGATCCACACCACTCCAATCTGCAACCCCCCCCTCAGTTCCCCAGGTACCATTTCCTTTAGCCATGGTCCTTTAGGCA
CTGGAGCCAGCATTGGTGTCATCCTTTTTGTCCAGCATGGAATGCAGCCTTTCACCCACTCTGCCCCAACCACTCCAGTTCCGCCCACCACAGCGTCTCCTGTCATCCCTGTTGATCCTAAGAAACTC
TCTAGAGAGGGACCTCATTGCCACAGTTTGCCAGCAACTCTGCCATCAGACTGGAGCTGTACCCTGTCTGGCCCTGGTCTACCCACTATGGCCAGAGAGATGACCATGGGACATCTAGAGCAAATGAG
AAGCCATCCTCCAGTTGCTCCTGAGGTCCATTCTCTCAACCCCTAATCCAGGACTTGAGACTGTGGTTTCTAATTTGTGTAAATGTATGTCTCTCATATATATTTTTTACTTTTCATGTGTACATTTG
TGTTGAGGGAAGAGAAGTCCTTTTTGATTAAAGAAATTTTATACCTGAACA

hide sequence

RefSeq Acc Id:

XM_038423035 ⟹ XP_038278963

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	17	60,540,838 - 60,545,124 (+)	NCBI

RefSeq Acc Id:

XM_038423036 ⟹ XP_038278964

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	17	60,540,474 - 60,545,124 (+)	NCBI

RefSeq Acc Id:

XM_038423037 ⟹ XP_038278965

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	17	60,540,990 - 60,545,124 (+)	NCBI

RefSeq Acc Id:

XM_038453077 ⟹ XP_038309005

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	17	58,971,767 - 58,975,921 (+)	NCBI

RefSeq Acc Id:

XM_038499534 ⟹ XP_038355462

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	17	59,371,306 - 59,375,587 (+)	NCBI

RefSeq Acc Id:

XM_038499535 ⟹ XP_038355463

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	17	59,370,942 - 59,375,587 (+)	NCBI

RefSeq Acc Id:

XM_038499536 ⟹ XP_038355464

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	17	59,371,458 - 59,375,587 (+)	NCBI

RefSeq Acc Id:

XM_038562106 ⟹ XP_038418034

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	17	60,182,865 - 60,187,143 (+)	NCBI

RefSeq Acc Id:

XM_038562107 ⟹ XP_038418035

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	17	60,182,501 - 60,187,143 (+)	NCBI

RefSeq Acc Id:

XM_038562108 ⟹ XP_038418036

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	17	60,183,017 - 60,187,143 (+)	NCBI

RefSeq Acc Id:

XM_038626202 ⟹ XP_038482130

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	17	59,455,108 - 59,459,367 (+)	NCBI

RefSeq Acc Id:

XM_038626203 ⟹ XP_038482131

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	17	59,454,744 - 59,459,367 (+)	NCBI

RefSeq Acc Id:

XM_038626204 ⟹ XP_038482132

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	17	59,455,260 - 59,459,367 (+)	NCBI


Protein RefSeqs	XP_003639691	(Get FASTA)	NCBI Sequence Viewer
	XP_005630803	(Get FASTA)	NCBI Sequence Viewer
	XP_038278963	(Get FASTA)	NCBI Sequence Viewer
	XP_038278964	(Get FASTA)	NCBI Sequence Viewer
	XP_038278965	(Get FASTA)	NCBI Sequence Viewer
	XP_038309005	(Get FASTA)	NCBI Sequence Viewer
	XP_038355462	(Get FASTA)	NCBI Sequence Viewer
	XP_038355463	(Get FASTA)	NCBI Sequence Viewer
	XP_038355464	(Get FASTA)	NCBI Sequence Viewer
	XP_038418034	(Get FASTA)	NCBI Sequence Viewer
	XP_038418035	(Get FASTA)	NCBI Sequence Viewer
	XP_038418036	(Get FASTA)	NCBI Sequence Viewer
	XP_038482130	(Get FASTA)	NCBI Sequence Viewer
	XP_038482131	(Get FASTA)	NCBI Sequence Viewer
	XP_038482132	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000017357.4
	ENSCAFP00030008859.1
	ENSCAFP00040016275.1
	ENSCAFP00845023461
	ENSCAFP00845023461.1

RefSeq Acc Id:

XP_003639691 ⟸ XM_003639643

- UniProtKB:

A0A8C0L5M9 (UniProtKB/TrEMBL), A0A8C0ME62 (UniProtKB/TrEMBL), A0A8I3P2Z3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSPASDYSCSSYSLSSCLSTSPVNSDFGLPSDSEGEDKGAHGPRSDPAGQRGGSRPSPGPIRCRQRTKVSSNQHTASHLEQRGLASPMVGSGVKKSRDGELQTNVNIQGCTTEGDLLFAQKCKELQG
FIRPLTDLLNGLKMGRFERGLSSFQQSVAMDRIQRIVGILQKPQMGERYLGTLLQVEGMLKTWFPHIAAQKSSLSSSRHQLTKHFPSPHSYSAASSPAPPLEKMDKTQLGHLLLKPKQPWHLTEWPTM
HLTWIHTTPICNPPLSSPGTISFSHGPLGTGASIGVILFVQHGMQPFTHSAPTTPVPPTTASPVIPVDPKKLSREGPHCHSLPATLPSDWSCTLSGPGLPTMAREMTMGHLEQMRSHPPVAPEVHSLN
P

hide sequence

RefSeq Acc Id:

XP_005630803 ⟸ XM_005630746

- UniProtKB:

A0A8C0L5M9 (UniProtKB/TrEMBL), A0A8C0ME62 (UniProtKB/TrEMBL), A0A8I3P2Z3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSPASDYSCSSYSLSSCLSTSPVNSDFGLPSDSEGEDKGAHGPRSDPAGQRGGSRPSPGPIRC
RQRTKVSSNQHTASHLEQRGLASPMVGSGVKKSRDGELQTNVNIQGCTTEGDLLFAQKCKELQGFIRPLTDLLNGLKMGRFERGLSSFQQSVAMDRIQRIVGILQKPQMGERYLGTLLQVEGMLKTWF
PHIAAQKSSLSSSRHQLTKHFPSPHSYSAASSPAPPLEKMDKTQLGHLLLKPKQPWHLTEWPTMHLTWIHTTPICNPPLSSPGTISFSHGPLGTGASIGVILFVQHGMQPFTHSAPTTPVPPTTASPV
IPVDPKKLSREGPHCHSLPATLPSDWSCTLSGPGLPTMAREMTMGHLEQMRSHPPVAPEVHSLNP

hide sequence

Ensembl Acc Id:

ENSCAFP00000017357 ⟸ ENSCAFT00000018735

RefSeq Acc Id:

XP_038355463 ⟸ XM_038499535

RefSeq Acc Id:

XP_038355462 ⟸ XM_038499534

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000011804	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030005497	UniProtKB/TrEMBL
	ENSCAFG00040010085	UniProtKB/TrEMBL
	ENSCAFG00845016855	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000018735.5	UniProtKB/TrEMBL
	ENSCAFT00030010113.1	UniProtKB/TrEMBL
	ENSCAFT00040018753.1	UniProtKB/TrEMBL
	ENSCAFT00845029874	ENTREZGENE
	ENSCAFT00845029874.1	UniProtKB/TrEMBL
InterPro	Ciart	UniProtKB/TrEMBL
KEGG Report	cfa:100856543	UniProtKB/TrEMBL
NCBI Gene	CIART	ENTREZGENE
PANTHER	CIRCADIAN-ASSOCIATED TRANSCRIPTIONAL REPRESSOR	UniProtKB/TrEMBL
	PTHR35441	UniProtKB/TrEMBL
Pfam	Ciart	UniProtKB/TrEMBL
UniProt	A0A8C0L5M9	ENTREZGENE
	A0A8C0ME62	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P2Z3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:39265	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar