PWWP2A (PWWP domain containing 2A) - Rat Genome Database

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Gene: PWWP2A (PWWP domain containing 2A) Sus scrofa
Analyze
Symbol: PWWP2A
Name: PWWP domain containing 2A
RGD ID: 13866223
Description: ENCODES a protein that exhibits histone H3K36me3 reader activity (ortholog); INVOLVED IN positive regulation of transcription elongation by RNA polymerase II (ortholog); regulation of transcriptional start site selection at RNA polymerase II promoter (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PWWP domain-containing protein 2A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1663,409,932 - 63,448,871 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11663,409,898 - 63,449,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21668,901,249 - 68,940,242 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PWWP2APignucleus located_inIEAUniProtKB:Q96N64 and ensembl:ENSP00000305151150520179 EnsemblGO_REF:0000107

Molecular Function
1 to 11 of 11 rows

  
1 to 11 of 11 rows

PMID:14681463   PMID:17145712   PMID:30032202  



PWWP2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1663,409,932 - 63,448,871 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11663,409,898 - 63,449,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21668,901,249 - 68,940,242 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PWWP2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385160,044,316 - 160,119,450 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5160,061,801 - 160,119,450 (-)EnsemblGRCh38hg38GRCh38
GRCh375159,502,889 - 159,546,457 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365159,435,467 - 159,479,030 (-)NCBINCBI36Build 36hg18NCBI36
Celera5155,534,450 - 155,578,003 (-)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5154,597,226 - 154,640,986 (-)NCBIHuRef
CHM1_15158,935,909 - 158,979,466 (-)NCBICHM1_1
T2T-CHM13v2.05160,572,113 - 160,648,036 (-)NCBIT2T-CHM13v2.0
Pwwp2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,566,881 - 43,613,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,572,825 - 43,612,318 (+)EnsemblGRCm39 Ensembl
GRCm381143,681,125 - 43,722,633 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,681,998 - 43,721,491 (+)EnsemblGRCm38mm10GRCm38
MGSCv371143,495,500 - 43,536,135 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361143,525,378 - 43,566,056 (+)NCBIMGSCv36mm8
Celera1148,308,136 - 48,348,710 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.81NCBI
Pwwp2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,654,272 - 28,696,693 (+)NCBIGRCr8
mRatBN7.21028,155,509 - 28,195,255 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,155,605 - 28,194,308 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1032,915,090 - 32,953,781 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,453,464 - 1,492,155 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,885,634 - 27,924,324 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,288,060 - 29,335,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,289,203 - 29,334,478 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,128,931 - 29,175,653 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,789,156 - 28,828,007 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11028,813,480 - 28,815,082 (+)NCBI
Celera1027,646,254 - 27,683,715 (+)NCBICelera
Cytogenetic Map10q21NCBI
Pwwp2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540814,025,964 - 14,051,149 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540814,007,982 - 14,051,149 (-)NCBIChiLan1.0ChiLan1.0
PWWP2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,247,172 - 155,304,599 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,386,720 - 153,443,973 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,452,698 - 155,509,961 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15162,083,726 - 162,126,580 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5162,085,988 - 162,130,604 (-)Ensemblpanpan1.1panPan2
PWWP2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1450,558,972 - 50,596,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha450,453,374 - 50,490,652 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0450,994,006 - 51,031,276 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl450,993,644 - 51,031,271 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1450,802,291 - 50,839,748 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.0451,446,156 - 51,483,420 (+)NCBIUU_Cfam_GSD_1.0
Pwwp2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213104,949,993 - 104,986,924 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365153,399,339 - 3,436,003 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PWWP2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12362,428,936 - 62,490,904 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2362,460,139 - 62,490,803 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603415,116,595 - 15,181,271 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pwwp2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473329,404,778 - 29,441,414 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473329,404,918 - 29,443,674 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in PWWP2A
1303 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3


1 to 16 of 16 rows
RefSeq Transcripts XM_005674533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002339710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002339711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK395431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK400601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP085377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01071461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENSSSCT00000043377   ⟹   ENSSSCP00000036395
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1663,409,932 - 63,448,871 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000059849   ⟹   ENSSSCP00000047440
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1663,409,952 - 63,448,863 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000060022   ⟹   ENSSSCP00000051661
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1663,409,932 - 63,434,801 (+)Ensembl
RefSeq Acc Id: XM_005674533   ⟹   XP_005674590
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,409,898 - 63,449,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076907   ⟹   XP_020932566
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,409,921 - 63,434,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076908   ⟹   XP_020932567
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,411,926 - 63,434,750 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076910   ⟹   XP_020932569
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,409,898 - 63,449,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076911   ⟹   XP_020932570
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,409,898 - 63,447,716 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076912   ⟹   XP_020932571
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,410,491 - 63,434,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076913   ⟹   XP_020932572
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,412,058 - 63,434,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076914   ⟹   XP_020932573
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,409,899 - 63,449,997 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002339710
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,409,898 - 63,449,997 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002339711
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11663,409,898 - 63,449,997 (+)NCBI
Sequence:
1 to 5 of 11 rows
1 to 5 of 11 rows
RefSeq Acc Id: XP_020932569   ⟸   XM_021076910
- Peptide Label: isoform X3
- UniProtKB: A0A8D1U4V7 (UniProtKB/TrEMBL),   A0A480MQS1 (UniProtKB/TrEMBL),   A0A481CBH5 (UniProtKB/TrEMBL),   A0A4X1TYF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005674590   ⟸   XM_005674533
- Peptide Label: isoform X4
- UniProtKB: A0A286ZXP7 (UniProtKB/TrEMBL),   A0A8D2C2Q0 (UniProtKB/TrEMBL),   A0A8D1CVG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932570   ⟸   XM_021076911
- Peptide Label: isoform X3
- UniProtKB: A0A8D1U4V7 (UniProtKB/TrEMBL),   A0A480MQS1 (UniProtKB/TrEMBL),   A0A481CBH5 (UniProtKB/TrEMBL),   A0A4X1TYF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932573   ⟸   XM_021076914
- Peptide Label: isoform X6
- UniProtKB: A0A8D1U4U0 (UniProtKB/TrEMBL),   A0A287AUB0 (UniProtKB/TrEMBL),   A0A8D1A5G8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932566   ⟸   XM_021076907
- Peptide Label: isoform X1
- UniProtKB: A0A287AR17 (UniProtKB/TrEMBL),   A0A287B5D8 (UniProtKB/TrEMBL),   A0A8D1CVU0 (UniProtKB/TrEMBL)
- Sequence:
PWWP



1 to 40 of 51 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000017038 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025028388 UniProtKB/TrEMBL
  ENSSSCG00030042390 UniProtKB/TrEMBL
  ENSSSCG00035045115 UniProtKB/TrEMBL
  ENSSSCG00045018463 UniProtKB/TrEMBL
  ENSSSCG00055017312 UniProtKB/TrEMBL
  ENSSSCG00065023996 UniProtKB/TrEMBL
  ENSSSCG00070013295 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043377 ENTREZGENE
  ENSSSCT00000043377.3 UniProtKB/TrEMBL
  ENSSSCT00000059849 ENTREZGENE
  ENSSSCT00000059849.3 UniProtKB/TrEMBL
  ENSSSCT00000060022 ENTREZGENE
  ENSSSCT00000060022.3 UniProtKB/TrEMBL
  ENSSSCT00025038549.1 UniProtKB/TrEMBL
  ENSSSCT00030058996.1 UniProtKB/TrEMBL
  ENSSSCT00035059954.1 UniProtKB/TrEMBL
  ENSSSCT00035059957.1 UniProtKB/TrEMBL
  ENSSSCT00035059964.1 UniProtKB/TrEMBL
  ENSSSCT00045031437.1 UniProtKB/TrEMBL
  ENSSSCT00045031497.1 UniProtKB/TrEMBL
  ENSSSCT00055033993.1 UniProtKB/TrEMBL
  ENSSSCT00055034063.1 UniProtKB/TrEMBL
  ENSSSCT00055034163.1 UniProtKB/TrEMBL
  ENSSSCT00065031931.1 UniProtKB/TrEMBL
  ENSSSCT00065031936.1 UniProtKB/TrEMBL
  ENSSSCT00070025918.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
InterPro PWWP_dom UniProtKB/TrEMBL
NCBI Gene PWWP2A ENTREZGENE
PANTHER LP07818P1 UniProtKB/TrEMBL
  OS12G0136300 PROTEIN UniProtKB/TrEMBL
Pfam PWWP UniProtKB/TrEMBL
PROSITE PWWP UniProtKB/TrEMBL
SMART PWWP UniProtKB/TrEMBL
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A286ZXP7 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AR17 ENTREZGENE
  A0A287AUB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B5D8 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 51 rows