Pwwp2a (PWWP domain containing 2A)

Gene: Pwwp2a (PWWP domain containing 2A) Ictidomys tridecemlineatus

Analyze

Symbol:

Pwwp2a

Name:

PWWP domain containing 2A

RGD ID:

12736801

Description:

ENCODES a protein that exhibits methylated histone binding (ortholog); NuRD complex binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); positive regulation of transcription elongation by RNA polymerase II (ortholog); regulation of transcriptional start site selection at RNA polymerase II promoter (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

PWWP domain containing 2A, transcript variant X1; PWWP domain containing 2A, transcript variant X2; PWWP domain containing 2A, transcript variant X3; PWWP domain-containing protein 2A

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	104,949,993 - 104,986,924 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936515	3,399,339 - 3,436,003 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (ISO)

positive regulation of transcription elongation by RNA polymerase II (ISO)

regulation of transcriptional start site selection at RNA polymerase II promoter (ISO)

Cellular Component

nucleus (IEA)

Molecular Function

chromatin binding (IEA)

histone binding (IEA)

methylated histone binding (ISO)

NuRD complex binding (ISO)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Pwwp2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	104,949,993 - 104,986,924 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936515	3,399,339 - 3,436,003 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PWWP2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	160,044,316 - 160,119,450 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	160,061,801 - 160,119,450 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	159,502,889 - 159,546,457 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	159,435,467 - 159,479,030 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	155,534,450 - 155,578,003 (-)	NCBI		Celera
Cytogenetic Map	5	q33.3	NCBI
HuRef	5	154,597,226 - 154,640,986 (-)	NCBI		HuRef
CHM1_1	5	158,935,909 - 158,979,466 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	160,572,113 - 160,648,036 (-)	NCBI		T2T-CHM13v2.0

Pwwp2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	43,566,881 - 43,613,248 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	43,572,825 - 43,612,318 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	43,681,125 - 43,722,633 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	43,681,998 - 43,721,491 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	43,495,500 - 43,536,135 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	43,525,378 - 43,566,056 (+)	NCBI		MGSCv36	mm8
Celera	11	48,308,136 - 48,348,710 (+)	NCBI		Celera
Cytogenetic Map	11	B1.1	NCBI
cM Map	11	25.81	NCBI

Pwwp2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	28,654,272 - 28,696,693 (+)	NCBI		GRCr8
mRatBN7.2	10	28,155,509 - 28,195,255 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	28,155,605 - 28,194,308 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	32,915,090 - 32,953,781 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	1,453,464 - 1,492,155 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	27,885,634 - 27,924,324 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	29,288,060 - 29,335,425 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	29,289,203 - 29,334,478 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	29,128,931 - 29,175,653 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	28,789,156 - 28,828,007 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	28,813,480 - 28,815,082 (+)	NCBI
Celera	10	27,646,254 - 27,683,715 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

Pwwp2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	14,025,964 - 14,051,149 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	14,007,982 - 14,051,149 (-)	NCBI	ChiLan1.0	ChiLan1.0

PWWP2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	155,247,172 - 155,304,599 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	153,386,720 - 153,443,973 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	155,452,698 - 155,509,961 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	162,083,726 - 162,126,580 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	162,085,988 - 162,130,604 (-)	Ensembl	panpan1.1		panPan2

PWWP2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	50,558,972 - 50,596,546 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	50,453,374 - 50,490,652 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	50,994,006 - 51,031,276 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	50,993,644 - 51,031,271 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	50,802,291 - 50,839,748 (+)	NCBI		UMICH_Zoey_3.1
UU_Cfam_GSD_1.0	4	51,446,156 - 51,483,420 (+)	NCBI		UU_Cfam_GSD_1.0

PWWP2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	63,409,932 - 63,448,871 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	63,409,898 - 63,449,997 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	68,901,249 - 68,940,242 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PWWP2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	62,428,936 - 62,490,904 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	62,460,139 - 62,490,803 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	15,116,595 - 15,181,271 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pwwp2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	29,404,778 - 29,441,414 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	29,404,918 - 29,443,674 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021726472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021726472 ⟹ XP_021582147

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	104,949,993 - 104,986,924 (+)	NCBI
SpeTri2.0	NW_004936515	3,399,339 - 3,436,003 (+)	NCBI

Sequence:

show sequence

CCCGAGGAGCGCGAGGACACGCCGCTGCCCCAGCCCACAGCTCCGGCGCTGGTGCCGCCCGCGG
GCGGGGACTCCGCGGTGTCGCAATTGATTCCCGGCTCGGAGGTGCGGGTCACTCTGGACCACAT
CATTGAGGACGCGCTCGTCGTGTCGTTCCGCCTCGGAGAGAAGCTCTTCTCCGGGGTCCTCATG
GATCTGTCCAAAAGGTTTGGGCCCCATGGGATCCCTGTGACAGTATTTCCTAAAAGGGAATATA
AGGATAAACCGGAAGCCAGGCAGCTCCAAAGTAATACATTCCAAGAAGGGACAGAAGTCAAGGG
TGAAGTGAATGGTGCTGTTCCCAACGATCCTTCTGTCCCACCTCCTGAGCTGAGTTTGGCTGAA
AGCCTGTGGACTTCCAAACCACCACCTCTCTTCCATGAAGGAGCACCTTATCCTCCCCCTTTGT
TTATCAGGGACACATATAACCAATCAATACCTCAGCCTCCTCCTCGGAAAATTAAGCGACCCAA
ACGAAAAATGTACCGGGAAGAACCCACTTCAATAATAAATGCTATTAAACTACGACCCAGACAA
GTCCTCTGCGATAAGTGTAAAAACAGTGTTGTTGCTGAAAAAAAGGAAATTAGAAAAGGTAGTA
GTGCAAGTGACTCTTCTAAATATGAAGATAAAAAACGGAGAAATGAAAGTGTAGCTACTGTGAA
CAAAAAACTGAAAACTGACCATAAAGTGGATGGGAAAAACCAAAATGAAAGCCAGAGAAGAAAT
GCTGTGGTTAAGGTTTCAAATATTGCTCACAGCAGAGGCAGAGTAGTCAAAGTTTCTGCTCAGG
CAAATACGTCAAAAGCTCAGTTAAGTACTAAAAAAGTGCTCCAGAGTAAGAACATGGATCATGC
AAAAGCTCGGGAAGTATTGAAAATTGCCAAAGAAAAGGCACAAAAGAAGCAAAGTGAAACCTCT
ACTTCCAAAAATGCACATTCAAAAGTCCATTTCACTCGTCGATACCAGAATCCTAGCTCAGGTT
CCCTTCCACCCCGGGTTCGTTTAAAACCACAGAGGTACAGGAATGAAGAAAATGACTCTTCTCT
GAAGACAGGACTCGAGAAAATGCGGAGTGGCAAGATGGCACCCAAGCCCCAGTCTCGCTGCACC
TCCACCCGCTCAGCAGGTGAGGCCCCTTCAGAAAATCAGAGTCCCTCAAAAGGCCCTGAAGAGG
CCAGCAGTGGGGTTCAGGACACAAGTGAAGTGCCTGTACCTGGTGAGCAGGATGAACCACAGAC
ACTGGGCAAAAAGGGCAGCAAAAGCAATATCTCTGTTTACATGACCCTAAATCACAAGAAATCT
GACTCTTCCAGTGCTTCAGTGTGTAGCATTGATAGCACAGATGATTTGAAATCCTCCAACTCTG
AGTGTAGCTCTTCTGAAAGCTTTGATTTTCCTCCAGGCAGTATGCATGTACCTTCCACCTCCTC
CACTTCCTCCTCTTCAAAGGAAGAGAAAAAGCTCAGTAATTCCTTGAAAATGAAAATCTTTTCC
AAAAACGTCTCTAAATGCGTCACACCAGATGGCAGGACCATATGTGTAGGGGACATTGTTTGGG
CCAAGATATATGGCTTCCCTTGGTGGCCAGCCCGTATTCTTACTATAACTGTGAGCCGGAAAGA
TAACGGCCTTTTAGTCCGACAGGAGGCCCGCATTTCGTGGTTTGGGTCTCCAACAACATCTTTC
CTTGCTCTTTCGCAACTCTCCCCCTTTTTAGAAAACTTCCAGTCACGCTTTAATAAGAAGAGAA
AGGGCCTGTATCGCAAGGCTATCACAGAGGCGGCTAAGGCTGCCAAGCAACTGACCCCTGAAGT
GCGGGCTCTGTTGACACAGTTTGAAACGTGAACATGGACAGTAAGCACAAAGACATTAGCAGGC
TGCTGGTTTCATGGACCTGTACCACAATGACAGAGAACATCAGAGCATCAGGACTGAATGAAAT
TGGAGATTTTTAAAGCTGCACTAAGAAGTAAATGTTAAGGCAGTGGTTAAACCCAACAGTCTAT
AAAGGGGCACTTGCATTATAATAAACTGAAGAAAAGGTATTAGGGAATATTTTCTAAAACTACT
GCAATAAATTATGCATGAGATGAGGAGAAAGTGATGTGAATACACATAAGAACTCACTTGAATC
TTACGTATGGAGAATCACTGACAATAACTTCCTTAGAATGTGAAGTTCTTATCAGTACAGTCTG
GACAGGCTTAAAGGGCACGGGATGATGCAGAAATGCTGAATTATTTTTCATACCTAAACTTCGT
GCTTGCTCCAAGGCTTATGTTAATCAGTTCAGATATGAGCAAAGGTATTTCTAGAATGGTTCTT
ATGAAACAGCAATAGTCTCGTGCTAAGGCCAATGTCTCCTTCAGGGTGCCAGTGGAAATAAGAG
GAAAGATTATCTAACATCCCGCTGGAGGGATGGCAAAGTGCCCCACTCCACAAACAAATTTGGA
TCATTTCTTTCTAAAGCAGGGCTGTATTATCTTGAATACATGTTTGCTTGTTAGAACATATTAA
GGTGTATTTATTTGCCACTAGTATTTAACATTTTGTGCACATTTTCATAACTACATGCTTATCT
TTTCATATTTTGACTCCAGGTGGATAGTCTAGTGTTGACCTTGGAGTGAAAATGTATACTCCAA
GAGCTAGTTCTTAATTTACTGAGCTGGAAAAATTTTATTCTTGTCTCTGTCCTTATTGATTTTA
TCTTGTTCAGAAGAGGTAACAACATCTGAATTTTGATGTGGACCTCTTTACAGAGAGCCCCTCC
GTCTAATTGCAAGAAATTCTCACAGGTGTCAGGTAGGACTTGGCCCTGGGGGATGAGTGGCCAG
AAGAGATCCATAAAGATAGCTTGAACTTTCTGTGCATGGAACACGAATTCTTAGTAGAGACCAT
AATTTCTTTCTTTGATAAGTACATATTATGAAAAACTTTAATTTTTCTTTTTTAATGAATGGAG
AAAACATGAGAAAATCAGATGGACCTGTGAGTACTACATTTTTAAGGCATTTTATATTTGATGG
TGCCGTACTTTTAATAAAAAAACTGAAGTTTTTTAGTGGCAATACTGATTTATTTTTTAAATCA
GAAAGATTATTCCATATTGGTTACTTGTTAAAAAAAAAAAGAAAAAAATGCCAAAAAAAAAAAA
ACCCACAAAAAACACCACAAATTCATTTGAAGCAACATAATAAATAGCTGAGCACTTGGCTCAG
GTGTTCTAACTTTCCGTGATCTTACTGTATAGGTTTGGAATTACCTAATGACCACATGCTCAGG
ATTGATAAAATGTTCTAGGTGAAAGTTTTAGAATATTTAATTTATCTGACTGATTGTTTTTTAC
AACTCAAGAAAACAGACAGTCTTGAGCCTTGTGAACTTAATACAAATCCTAATTACATTGCAAG
TAATTAAAAGTGTTGACTGCATCCCACAGTTGTCTTTTTGGAAGATTCAGTATTATGAAGTCAT
TATATATCTTATCAAATTGGAAAAAGTCAGCTCAGGAACTATAGCAGCAGGAAATTCTAAAGAT
GACAGGTACTATCAGGTACCCTACTCTAGATGGCCCAAGGGTGATGGCATGGGTCATCTTGGCC
TTTCAGATGCCTAACACCAGCAGTACCTTTTAGGCTCACTTCAAGAACCAGATGACTCCCAAGC
CTTGGTGGGATTACATGTGGATTGTATAATGAGGATTTTAAACTAAGCTTTAGGATTCTTTGTG
TAGAGTAATGGGAATGACCAAGAAGTAATAATATAAAGGCAAAATAAATGGGAGAGATCAAGTT
TTAAGTATCTAAATATTTTTTTCTCATAATAAATTCTCAAAGATGTTTTGTTACAAA

hide sequence

RefSeq Acc Id:

XM_021726473 ⟹ XP_021582148

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	104,949,993 - 104,982,222 (+)	NCBI
SpeTri2.0	NW_004936515	3,399,339 - 3,431,503 (+)	NCBI

Sequence:

show sequence

CCCGAGGAGCGCGAGGACACGCCGCTGCCCCAGCCCACAGCTCCGGCGCTGGTGCCGCCCGCGG
GCGGGGACTCCGCGGTGTCGCAATTGATTCCCGGCTCGGAGGTGCGGGTCACTCTGGACCACAT
CATTGAGGACGCGCTCGTCGTGTCGTTCCGCCTCGGAGAGAAGCTCTTCTCCGGGGTCCTCATG
GATCTGTCCAAAAGGTTTGGGCCCCATGGGATCCCTGTGACAGTATTTCCTAAAAGGGAATATA
AGGATAAACCGGAAGCCAGGCAGCTCCAAAGTAATACATTCCAAGAAGGGACAGAAGTCAAGGG
TGAAGTGAATGGTGCTGTTCCCAACGATCCTTCTGTCCCACCTCCTGAGCTGAGTTTGGCTGAA
AGCCTGTGGACTTCCAAACCACCACCTCTCTTCCATGAAGGAGCACCTTATCCTCCCCCTTTGT
TTATCAGGGACACATATAACCAATCAATACCTCAGCCTCCTCCTCGGAAAATTAAGCGACCCAA
ACGAAAAATGTACCGGGAAGAACCCACTTCAATAATAAATGCTATTAAACTACGACCCAGACAA
GTCCTCTGCGATAAGTGTAAAAACAGTGTTGTTGCTGAAAAAAAGGAAATTAGAAAAGGTAGTA
GTGCAAGTGACTCTTCTAAATATGAAGATAAAAAACGGAGAAATGAAAGTGTAGCTACTGTGAA
CAAAAAACTGAAAACTGACCATAAAGTGGATGGGAAAAACCAAAATGAAAGCCAGAGAAGAAAT
GCTGTGGTTAAGGTTTCAAATATTGCTCACAGCAGAGGCAGAGTAGTCAAAGTTTCTGCTCAGG
CAAATACGTCAAAAGCTCAGTTAAGTACTAAAAAAGTGCTCCAGAGTAAGAACATGGATCATGC
AAAAGCTCGGGAAGTATTGAAAATTGCCAAAGAAAAGGCACAAAAGAAGCAAAGTGAAACCTCT
ACTTCCAAAAATGCACATTCAAAAGTCCATTTCACTCGTCGATACCAGAATCCTAGCTCAGGTT
CCCTTCCACCCCGGGTTCGTTTAAAACCACAGAGGTACAGGAATGAAGAAAATGACTCTTCTCT
GAAGACAGGACTCGAGAAAATGCGGAGTGGCAAGATGGCACCCAAGCCCCAGTCTCGCTGCACC
TCCACCCGCTCAGCAGGTGAGGCCCCTTCAGAAAATCAGAGTCCCTCAAAAGGCCCTGAAGAGG
CCAGCAGTGGGGTTCAGGACACAAGTGAAGTGCCTGTACCTGGTGAGCAGGATGAACCACAGAC
ACTGGGCAAAAAGGGCAGCAAAAGCAATATCTCTGTTTACATGACCCTAAATCACAAGAAATCT
GACTCTTCCAGTGCTTCAGTGTGTAGCATTGATAGCACAGATGATTTGAAATCCTCCAACTCTG
AGTGTAGCTCTTCTGAAAGCTTTGATTTTCCTCCAGGCAGTATGCATGTACCTTCCACCTCCTC
CACTTCCTCCTCTTCAAAGGAAGAGAAAAAGCTCAGTAATTCCTTGAAAATGAAAATCTTTTCC
AAAAACGTCTCTAAATGCGTCACACCAGATGGCAGGACCATATGTGTAGGGGACATTGTTTGGG
CCAAGATATATGGCTTCCCTTGGTGGCCAGCCCGTATTCTTACTATAACTGTGAGCCGGAAAGA
TAACGGCCTTTTAGTCCGACAGGAGGCCCGCATTTCGTGGTTTGGGTCTCCAACAACATCTTTC
CTTGCTCTTTCGCAACTCTCCCCCTTTTTAGAAAACTTCCAGTCACGCTTTAATAAGAAGAGAA
AGGGCCTGTATCGCAAGGCTATCACAGAGGCGGCTAAGGCTGCCAAGCAACTGACCCCTGAAGT
GCGGGCTCTGTTGACACAGTTTGAAACGTGAACATGGACAGTAAGGTCTCAACAAATGGCAGCT
ATTACATCAGACAGTGACGAGTCCTGCTGCTCCCTT

hide sequence

RefSeq Acc Id:

XM_021726474 ⟹ XP_021582149

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	104,949,993 - 104,986,924 (+)	NCBI
SpeTri2.0	NW_004936515	3,399,339 - 3,436,003 (+)	NCBI

Sequence:

show sequence

CCCGAGGAGCGCGAGGACACGCCGCTGCCCCAGCCCACAGCTCCGGCGCTGGTGCCGCCCGCGG
GCGGGGACTCCGCGGTGTCGCAATTGATTCCCGGCTCGGAGGTGCGGGTCACTCTGGACCACAT
CATTGAGGACGCGCTCGTCGTGTCGTTCCGCCTCGGAGAGAAGCTCTTCTCCGGGGTCCTCATG
GATCTGTCCAAAAGGTTTGGGCCCCATGGGATCCCTGTGACAGTATTTCCTAAAAGGGAATATA
AGGATAAACCGGAAGCCAGGCAGCTCCAAAGTAATACATTCCAAGAAGGGACAGAAGTCAAGGG
TGAAGTGAATGGTGCTGTTCCCAACGATCCTTCTGTCCCACCTCCTGAGCTGAGTTTGGCTGAA
AGCCTGTGGACTTCCAAACCACCACCTCTCTTCCATGAAGGAGCACCTTATCCTCCCCCTTTGT
TTATCAGGGACACATATAACCAATCAATACCTCAGCCTCCTCCTCGGAAAATTAAGCGACCCAA
ACGAAAAATGTACCGGGAAGAACCCACTTCAATAATAAATGCTATTAAACTACGACCCAGACAA
GTCCTCTGCGATAAGTGTAAAAACAGTGTTGTTGCTGAAAAAAAGGAAATTAGAAAAGGTAGTA
GTGCAAGTGACTCTTCTAAATATGAAGATAAAAAACGGAGAAATGAAAGTGTAGCTACTGTGAA
CAAAAAACTGAAAACTGACCATAAAGTGGATGGGAAAAACCAAAATGAAAGCCAGAGAAGAAAT
GCTGTGGTTAAGGTTTCAAATATTGCTCACAGCAGAGGCAGAGTAGTCAAAGTTTCTGCTCAGG
CAAATACGTCAAAAGCTCAGTTAAGTACTAAAAAAGTGCTCCAGAGTAAGAACATGGATCATGC
AAAAGCTCGGGAAGTATTGAAAATTGCCAAAGAAAAGGCACAAAAGAAGCAAAGTGAAACCTCT
ACTTCCAAAAATGCACATTCAAAAGTCCATTTCACTCGTCGATACCAGAATCCTAGCTCAGGTT
CCCTTCCACCCCGGGTTCGTTTAAAACCACAGAGGTACAGGAATGAAGAAAATGACTCTTCTCT
GAAGACAGGACTCGAGAAAATGCGGAGTGGCAAGATGGCACCCAAGCCCCAGTCTCGCTGCACC
TCCACCCGCTCAGCAGCACAAAGACATTAGCAGGCTGCTGGTTTCATGGACCTGTACCACAATG
ACAGAGAACATCAGAGCATCAGGACTGAATGAAATTGGAGATTTTTAAAGCTGCACTAAGAAGT
AAATGTTAAGGCAGTGGTTAAACCCAACAGTCTATAAAGGGGCACTTGCATTATAATAAACTGA
AGAAAAGGTATTAGGGAATATTTTCTAAAACTACTGCAATAAATTATGCATGAGATGAGGAGAA
AGTGATGTGAATACACATAAGAACTCACTTGAATCTTACGTATGGAGAATCACTGACAATAACT
TCCTTAGAATGTGAAGTTCTTATCAGTACAGTCTGGACAGGCTTAAAGGGCACGGGATGATGCA
GAAATGCTGAATTATTTTTCATACCTAAACTTCGTGCTTGCTCCAAGGCTTATGTTAATCAGTT
CAGATATGAGCAAAGGTATTTCTAGAATGGTTCTTATGAAACAGCAATAGTCTCGTGCTAAGGC
CAATGTCTCCTTCAGGGTGCCAGTGGAAATAAGAGGAAAGATTATCTAACATCCCGCTGGAGGG
ATGGCAAAGTGCCCCACTCCACAAACAAATTTGGATCATTTCTTTCTAAAGCAGGGCTGTATTA
TCTTGAATACATGTTTGCTTGTTAGAACATATTAAGGTGTATTTATTTGCCACTAGTATTTAAC
ATTTTGTGCACATTTTCATAACTACATGCTTATCTTTTCATATTTTGACTCCAGGTGGATAGTC
TAGTGTTGACCTTGGAGTGAAAATGTATACTCCAAGAGCTAGTTCTTAATTTACTGAGCTGGAA
AAATTTTATTCTTGTCTCTGTCCTTATTGATTTTATCTTGTTCAGAAGAGGTAACAACATCTGA
ATTTTGATGTGGACCTCTTTACAGAGAGCCCCTCCGTCTAATTGCAAGAAATTCTCACAGGTGT
CAGGTAGGACTTGGCCCTGGGGGATGAGTGGCCAGAAGAGATCCATAAAGATAGCTTGAACTTT
CTGTGCATGGAACACGAATTCTTAGTAGAGACCATAATTTCTTTCTTTGATAAGTACATATTAT
GAAAAACTTTAATTTTTCTTTTTTAATGAATGGAGAAAACATGAGAAAATCAGATGGACCTGTG
AGTACTACATTTTTAAGGCATTTTATATTTGATGGTGCCGTACTTTTAATAAAAAAACTGAAGT
TTTTTAGTGGCAATACTGATTTATTTTTTAAATCAGAAAGATTATTCCATATTGGTTACTTGTT
AAAAAAAAAAAGAAAAAAATGCCAAAAAAAAAAAAACCCACAAAAAACACCACAAATTCATTTG
AAGCAACATAATAAATAGCTGAGCACTTGGCTCAGGTGTTCTAACTTTCCGTGATCTTACTGTA
TAGGTTTGGAATTACCTAATGACCACATGCTCAGGATTGATAAAATGTTCTAGGTGAAAGTTTT
AGAATATTTAATTTATCTGACTGATTGTTTTTTACAACTCAAGAAAACAGACAGTCTTGAGCCT
TGTGAACTTAATACAAATCCTAATTACATTGCAAGTAATTAAAAGTGTTGACTGCATCCCACAG
TTGTCTTTTTGGAAGATTCAGTATTATGAAGTCATTATATATCTTATCAAATTGGAAAAAGTCA
GCTCAGGAACTATAGCAGCAGGAAATTCTAAAGATGACAGGTACTATCAGGTACCCTACTCTAG
ATGGCCCAAGGGTGATGGCATGGGTCATCTTGGCCTTTCAGATGCCTAACACCAGCAGTACCTT
TTAGGCTCACTTCAAGAACCAGATGACTCCCAAGCCTTGGTGGGATTACATGTGGATTGTATAA
TGAGGATTTTAAACTAAGCTTTAGGATTCTTTGTGTAGAGTAATGGGAATGACCAAGAAGTAAT
AATATAAAGGCAAAATAAATGGGAGAGATCAAGTTTTAAGTATCTAAATATTTTTTTCTCATAA
TAAATTCTCAAAGATGTTTTGTTACAAA

hide sequence

RefSeq Acc Id:

XM_040272025 ⟹ XP_040127959

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	104,949,993 - 104,982,091 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_021582147	(Get FASTA)	NCBI Sequence Viewer
	XP_021582148	(Get FASTA)	NCBI Sequence Viewer
	XP_021582149	(Get FASTA)	NCBI Sequence Viewer
	XP_040127959	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000021895.2
	ENSSTOP00000026997.1
GenBank Protein	KAG3265360	(Get FASTA)	NCBI Sequence Viewer
	KAG3265361	(Get FASTA)	NCBI Sequence Viewer
	KAG3265362	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021582147 ⟸ XM_021726472
- Peptide Label:	isoform X1
- UniProtKB:	I3NBZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLSKRFGPHGIPVTVFPKREYKDKPEARQLQSNTFQEGTEVKGEVNGAVPNDPSVPPPELSLA ESLWTSKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREEPTSIINAIKLRPR QVLCDKCKNSVVAEKKEIRKGSSASDSSKYEDKKRRNESVATVNKKLKTDHKVDGKNQNESQRR NAVVKVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSET STSKNAHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKMRSGKMAPKPQSRC TSTRSAGEAPSENQSPSKGPEEASSGVQDTSEVPVPGEQDEPQTLGKKGSKSNISVYMTLNHKK SDSSSASVCSIDSTDDLKSSNSECSSSESFDFPPGSMHVPSTSSTSSSSKEEKKLSNSLKMKIF SKNVSKCVTPDGRTICVGDIVWAKIYGFPWWPARILTITVSRKDNGLLVRQEARISWFGSPTTS FLALSQLSPFLENFQSRFNKKRKGLYRKAITEAAKAAKQLTPEVRALLTQFET hide sequence

RefSeq Acc Id:

XP_021582149 ⟸ XM_021726474

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDLSKRFGPHGIPVTVFPKREYKDKPEARQLQSNTFQEGTEVKGEVNGAVPNDPSVPPPELSLA
ESLWTSKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREEPTSIINAIKLRPR
QVLCDKCKNSVVAEKKEIRKGSSASDSSKYEDKKRRNESVATVNKKLKTDHKVDGKNQNESQRR
NAVVKVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSET
STSKNAHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKMRSGKMAPKPQSRC
TSTRSAAQRH

hide sequence

RefSeq Acc Id:	XP_021582148 ⟸ XM_021726473
- Peptide Label:	isoform X1
- UniProtKB:	I3NBZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLSKRFGPHGIPVTVFPKREYKDKPEARQLQSNTFQEGTEVKGEVNGAVPNDPSVPPPELSLA ESLWTSKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREEPTSIINAIKLRPR QVLCDKCKNSVVAEKKEIRKGSSASDSSKYEDKKRRNESVATVNKKLKTDHKVDGKNQNESQRR NAVVKVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSET STSKNAHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKMRSGKMAPKPQSRC TSTRSAGEAPSENQSPSKGPEEASSGVQDTSEVPVPGEQDEPQTLGKKGSKSNISVYMTLNHKK SDSSSASVCSIDSTDDLKSSNSECSSSESFDFPPGSMHVPSTSSTSSSSKEEKKLSNSLKMKIF SKNVSKCVTPDGRTICVGDIVWAKIYGFPWWPARILTITVSRKDNGLLVRQEARISWFGSPTTS FLALSQLSPFLENFQSRFNKKRKGLYRKAITEAAKAAKQLTPEVRALLTQFET hide sequence

RefSeq Acc Id:	XP_040127959 ⟸ XM_040272025
- Peptide Label:	isoform X2

Protein Domains

PWWP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000021953	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000023312.2	UniProtKB/TrEMBL
	ENSSTOT00000041386.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.30.140	UniProtKB/TrEMBL
InterPro	PWWP_dom	UniProtKB/TrEMBL
NCBI Gene	Pwwp2a	ENTREZGENE
PANTHER	DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED	UniProtKB/TrEMBL
	PWWP DOMAIN-CONTAINING PROTEIN 2A	UniProtKB/TrEMBL
Pfam	PWWP	UniProtKB/TrEMBL
PROSITE	PWWP	UniProtKB/TrEMBL
SMART	PWWP	UniProtKB/TrEMBL
Superfamily-SCOP	Tudor/PWWP/MBT	UniProtKB/TrEMBL
UniProt	A0A287D0E8_ICTTR	UniProtKB/TrEMBL
	I3NBZ8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar