Pwwp2a (PWWP domain containing 2A) - Rat Genome Database

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Gene: Pwwp2a (PWWP domain containing 2A) Mus musculus
Analyze
Symbol: Pwwp2a
Name: PWWP domain containing 2A
RGD ID: 1314194
MGI Page MGI
Description: Predicted to enable NuRD complex binding activity; chromatin binding activity; and methylated histone binding activity. Involved in chromatin remodeling; positive regulation of transcription elongation by RNA polymerase II; and regulation of transcriptional start site selection at RNA polymerase II promoter. Predicted to be active in nucleus. Orthologous to human PWWP2A (PWWP domain containing 2A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4631424J17Rik; AI891583; AU024105; D930040F23Rik; PWWP domain-containing protein 2A; RP23-320E20.3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,566,881 - 43,613,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,572,825 - 43,612,318 (+)EnsemblGRCm39 Ensembl
GRCm381143,681,125 - 43,722,633 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,681,998 - 43,721,491 (+)EnsemblGRCm38mm10GRCm38
MGSCv371143,495,500 - 43,536,135 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361143,525,378 - 43,566,056 (+)NCBIMGSCv36mm8
Celera1148,308,136 - 48,348,710 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15368895   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:21267068   PMID:21873635   PMID:30228260   PMID:33235983   PMID:38355793  


Genomics

Comparative Map Data
Pwwp2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,566,881 - 43,613,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,572,825 - 43,612,318 (+)EnsemblGRCm39 Ensembl
GRCm381143,681,125 - 43,722,633 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,681,998 - 43,721,491 (+)EnsemblGRCm38mm10GRCm38
MGSCv371143,495,500 - 43,536,135 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361143,525,378 - 43,566,056 (+)NCBIMGSCv36mm8
Celera1148,308,136 - 48,348,710 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.81NCBI
PWWP2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385160,044,316 - 160,119,450 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5160,061,801 - 160,119,450 (-)EnsemblGRCh38hg38GRCh38
GRCh375159,502,889 - 159,546,457 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365159,435,467 - 159,479,030 (-)NCBINCBI36Build 36hg18NCBI36
Celera5155,534,450 - 155,578,003 (-)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5154,597,226 - 154,640,986 (-)NCBIHuRef
CHM1_15158,935,909 - 158,979,466 (-)NCBICHM1_1
T2T-CHM13v2.05160,572,113 - 160,648,036 (-)NCBIT2T-CHM13v2.0
Pwwp2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,654,272 - 28,696,693 (+)NCBIGRCr8
mRatBN7.21028,155,509 - 28,195,255 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,155,605 - 28,194,308 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1032,915,090 - 32,953,781 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,453,464 - 1,492,155 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,885,634 - 27,924,324 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,288,060 - 29,335,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,289,203 - 29,334,478 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,128,931 - 29,175,653 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,789,156 - 28,828,007 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11028,813,480 - 28,815,082 (+)NCBI
Celera1027,646,254 - 27,683,715 (+)NCBICelera
Cytogenetic Map10q21NCBI
Pwwp2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540814,025,964 - 14,051,149 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540814,007,982 - 14,051,149 (-)NCBIChiLan1.0ChiLan1.0
PWWP2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,247,172 - 155,304,599 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,386,720 - 153,443,973 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,452,698 - 155,509,961 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15162,083,726 - 162,126,580 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5162,085,988 - 162,130,604 (-)Ensemblpanpan1.1panPan2
PWWP2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1450,558,972 - 50,596,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha450,453,374 - 50,490,652 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0450,994,006 - 51,031,276 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl450,993,644 - 51,031,271 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1450,802,291 - 50,839,748 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.0451,446,156 - 51,483,420 (+)NCBIUU_Cfam_GSD_1.0
Pwwp2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213104,949,993 - 104,986,924 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365153,399,339 - 3,436,003 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PWWP2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1663,409,932 - 63,448,871 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11663,409,898 - 63,449,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21668,901,249 - 68,940,242 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PWWP2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12362,428,936 - 62,490,904 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2362,460,139 - 62,490,803 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603415,116,595 - 15,181,271 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pwwp2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473329,404,778 - 29,441,414 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473329,404,918 - 29,443,674 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pwwp2a
1726 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:834
Count of miRNA genes:373
Interacting mature miRNAs:427
Transcripts:ENSMUST00000061070, ENSMUST00000094294, ENSMUST00000109280, ENSMUST00000129229, ENSMUST00000130467, ENSMUST00000148461
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
10043922Alcw9_malcohol withdrawal 9 (mouse)Not determined113557861644065931Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
1301718Pbw3_mpentobarbital withdrawal QTL 3 (mouse)Not determined113557861644065931Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
1558769Zolw1_mzolpidem withdrawal 1 (mouse)Not determined113557861644065931Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
AI891583  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381143,721,141 - 43,721,223UniSTSGRCm38
MGSCv371143,534,643 - 43,534,725UniSTSGRCm37
Celera1148,347,218 - 48,347,300UniSTS
Cytogenetic Map11B1.1UniSTS
Whitehead/MRC_RH11597.77UniSTS
UniSTS:236558  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381143,721,183 - 43,721,389UniSTSGRCm38
MGSCv371143,534,685 - 43,534,891UniSTSGRCm37
Celera1148,347,260 - 48,347,466UniSTS
Cytogenetic Map11B1.1UniSTS
UniSTS:236559  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381143,706,297 - 43,706,642UniSTSGRCm38
MGSCv371143,519,799 - 43,520,144UniSTSGRCm37
Celera1148,332,351 - 48,332,712UniSTS
Cytogenetic Map11B1.1UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK014534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF458131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000061070   ⟹   ENSMUSP00000054154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,572,825 - 43,598,018 (+)Ensembl
GRCm38.p6 Ensembl1143,681,998 - 43,707,191 (+)Ensembl
Ensembl Acc Id: ENSMUST00000094294   ⟹   ENSMUSP00000091852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,572,885 - 43,611,238 (+)Ensembl
GRCm38.p6 Ensembl1143,682,058 - 43,720,411 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109280   ⟹   ENSMUSP00000104903
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,574,972 - 43,598,018 (+)Ensembl
GRCm38.p6 Ensembl1143,684,145 - 43,707,191 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,596,070 - 43,612,318 (+)Ensembl
GRCm38.p6 Ensembl1143,705,243 - 43,721,491 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130467
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,608,483 - 43,611,659 (+)Ensembl
GRCm38.p6 Ensembl1143,717,656 - 43,720,832 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,573,375 - 43,574,881 (+)Ensembl
GRCm38.p6 Ensembl1143,682,548 - 43,684,054 (+)Ensembl
RefSeq Acc Id: NM_001164231   ⟹   NP_001157703
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,572,854 - 43,613,248 (+)NCBI
GRCm381143,681,998 - 43,722,633 (+)NCBI
MGSCv371143,495,500 - 43,536,135 (+)RGD
Celera1148,308,136 - 48,348,710 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001363141   ⟹   NP_001350070
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,572,854 - 43,613,248 (+)NCBI
GRCm381143,681,998 - 43,722,633 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363142   ⟹   NP_001350071
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,572,854 - 43,613,248 (+)NCBI
GRCm381143,681,998 - 43,722,633 (+)NCBI
Sequence:
RefSeq Acc Id: NM_027557   ⟹   NP_081833
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,572,854 - 43,598,021 (+)NCBI
GRCm381143,681,998 - 43,707,194 (+)NCBI
MGSCv371143,495,500 - 43,536,135 (+)RGD
Celera1148,308,136 - 48,348,710 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534200   ⟹   XP_006534263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,572,779 - 43,613,248 (+)NCBI
GRCm381143,681,125 - 43,722,421 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534208   ⟹   XP_006534271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,566,881 - 43,595,450 (+)NCBI
GRCm381143,681,125 - 43,704,623 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249257   ⟹   XP_011247559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,572,779 - 43,608,566 (+)NCBI
GRCm381143,681,125 - 43,717,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249259   ⟹   XP_011247561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,566,881 - 43,590,284 (+)NCBI
GRCm381143,681,125 - 43,699,457 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246310   ⟹   XP_030102170
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,573,379 - 43,613,248 (+)NCBI
GRCm381143,682,552 - 43,722,421 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156986   ⟹   XP_036012879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,574,308 - 43,613,248 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156987   ⟹   XP_036012880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,577,294 - 43,613,248 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001780050
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,572,779 - 43,613,248 (+)NCBI
GRCm381143,681,125 - 43,722,421 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937024
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,572,779 - 43,613,248 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937025
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,574,308 - 43,613,248 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937026
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,574,308 - 43,613,248 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937027
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,574,308 - 43,613,248 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937028
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,577,288 - 43,613,248 (+)NCBI
Sequence:
RefSeq Acc Id: XR_388529
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,566,881 - 43,595,449 (+)NCBI
GRCm381143,681,125 - 43,704,622 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001157703   ⟸   NM_001164231
- Peptide Label: isoform a
- UniProtKB: Q69Z61 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_081833   ⟸   NM_027557
- Peptide Label: isoform b
- UniProtKB: Q3TBG3 (UniProtKB/Swiss-Prot),   A2AJL0 (UniProtKB/Swiss-Prot),   A2AJK9 (UniProtKB/Swiss-Prot),   Q9CUT9 (UniProtKB/Swiss-Prot),   Q69Z61 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534263   ⟸   XM_006534200
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006534271   ⟸   XM_006534208
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011247561   ⟸   XM_011249259
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011247559   ⟸   XM_011249257
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001350070   ⟸   NM_001363141
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001350071   ⟸   NM_001363142
- Peptide Label: isoform 4
RefSeq Acc Id: XP_030102170   ⟸   XM_030246310
- Peptide Label: isoform X3
Ensembl Acc Id: ENSMUSP00000054154   ⟸   ENSMUST00000061070
Ensembl Acc Id: ENSMUSP00000104903   ⟸   ENSMUST00000109280
Ensembl Acc Id: ENSMUSP00000091852   ⟸   ENSMUST00000094294
RefSeq Acc Id: XP_036012879   ⟸   XM_036156986
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036012880   ⟸   XM_036156987
- Peptide Label: isoform X4
Protein Domains
PWWP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q69Z61-F1-model_v2 AlphaFold Q69Z61 1-730 view protein structure

Promoters
RGD ID:6821696
Promoter ID:MM_KWN:7037
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001164231,   NM_027557,   OTTMUST00000027689,   UC007IMV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361143,495,241 - 43,495,741 (+)MPROMDB
RGD ID:8674348
Promoter ID:EPDNEW_M15205
Type:initiation region
Name:Pwwp2a_1
Description:Mus musculus PWWP domain containing 2A , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381143,682,032 - 43,682,092EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918052 AgrOrtholog
Ensembl Genes ENSMUSG00000044950 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000061070 ENTREZGENE
  ENSMUST00000061070.6 UniProtKB/Swiss-Prot
  ENSMUST00000094294 ENTREZGENE
  ENSMUST00000094294.5 UniProtKB/Swiss-Prot
  ENSMUST00000109280.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PWWP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70802 UniProtKB/Swiss-Prot
MGD MGI:1918052 ENTREZGENE
NCBI Gene 70802 ENTREZGENE
PANTHER LP07818P1 UniProtKB/Swiss-Prot
  METHYL-CPG BINDING PROTEIN, DROSOPHILA UniProtKB/TrEMBL
  PWWP DOMAIN-CONTAINING PROTEIN 2B UniProtKB/TrEMBL
  RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG UniProtKB/Swiss-Prot
Pfam PWWP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pwwp2a PhenoGen
PROSITE PWWP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PWWP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AJK9 ENTREZGENE
  A2AJL0 ENTREZGENE
  PWP2A_MOUSE UniProtKB/Swiss-Prot
  Q3TBG3 ENTREZGENE
  Q69Z61 ENTREZGENE
  Q8BKR7_MOUSE UniProtKB/TrEMBL
  Q9CUT9 ENTREZGENE
  Z4YKW0_MOUSE UniProtKB/TrEMBL
UniProt Secondary A2AJK9 UniProtKB/Swiss-Prot
  A2AJL0 UniProtKB/Swiss-Prot
  Q3TBG3 UniProtKB/Swiss-Prot
  Q9CUT9 UniProtKB/Swiss-Prot